Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00196 * 2 1 4 4 H 1.48494 * 109.46877 * 269.99908 * 3 2 1 5 5 H 1.48495 * 109.46921 * 29.99854 * 3 2 1 6 6 H 1.48496 * 109.47094 * 149.99677 * 3 2 1 7 7 C 1.38815 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00416 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99328 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47042 * 204.99934 * 10 9 7 12 12 C 1.53000 * 109.47233 * 300.00642 * 11 10 9 13 13 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 14 14 N 1.46500 * 109.47473 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00270 * 154.99797 * 14 13 12 16 16 O 1.21555 * 119.99490 * 0.02562 * 15 14 13 17 17 C 1.47859 * 120.00216 * 180.02562 * 15 14 13 18 18 C 1.40633 * 120.25861 * 359.73039 * 17 15 14 19 19 N 1.30859 * 121.65655 * 179.68646 * 18 17 15 20 20 C 1.33592 * 121.58114 * 0.59990 * 19 18 17 21 21 C 1.40635 * 121.62583 * 179.67446 * 20 19 18 22 22 N 1.31151 * 120.03822 * 179.97438 * 21 20 19 23 23 C 1.32489 * 122.89313 * 0.02562 * 22 21 20 24 24 C 1.36314 * 121.70984 * 0.02562 * 23 22 21 25 25 C 1.40602 * 118.65289 * 359.97396 * 24 23 22 26 26 C 1.38993 * 120.26117 * 180.02562 * 17 15 14 27 27 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 28 28 C 1.52997 * 109.46949 * 85.00462 * 10 9 7 29 29 H 0.97000 * 120.00212 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00259 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47068 * 325.00513 * 10 9 7 32 32 H 1.08992 * 109.47063 * 180.02562 * 11 10 9 33 33 H 1.09004 * 109.46733 * 59.99984 * 11 10 9 34 34 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 35 35 H 1.09001 * 109.47194 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 0.97000 * 119.99491 * 335.00093 * 14 13 12 38 38 H 1.08000 * 119.17496 * 359.97053 * 18 17 15 39 39 H 1.07998 * 119.98018 * 0.02562 * 21 20 19 40 40 H 1.08004 * 119.14733 * 179.97438 * 23 22 21 41 41 H 1.08001 * 120.67884 * 179.97438 * 24 23 22 42 42 H 1.07998 * 121.10913 * 0.02594 * 26 17 15 43 43 H 1.09000 * 109.47486 * 180.02562 * 27 13 12 44 44 H 1.09002 * 109.46716 * 60.00091 * 27 13 12 45 45 H 1.09002 * 109.47153 * 179.97438 * 28 10 9 46 46 H 1.09001 * 109.47289 * 299.99924 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.1803 -4.7524 -0.6069 12 6 -0.0974 -4.9011 0.2215 13 6 0.2674 -5.2793 1.6584 14 7 -0.9560 -5.4223 2.4515 15 6 -0.9609 -6.2068 3.5474 16 8 0.0500 -6.7954 3.8779 17 6 -2.1958 -6.3516 4.3475 18 6 -3.3669 -5.6687 3.9732 19 7 -4.4764 -5.7817 4.6577 20 6 -4.5480 -6.5427 5.7534 21 6 -5.7381 -6.6596 6.4936 22 7 -5.7736 -7.4160 7.5644 23 6 -4.7230 -8.0948 8.0010 24 6 -3.5224 -8.0493 7.3569 25 6 -3.4076 -7.2586 6.1999 26 6 -2.2068 -7.1588 5.4789 27 6 1.1451 -4.1838 2.2669 28 6 2.4229 -4.0350 1.4385 29 1 -0.4850 0.8400 -0.0004 30 1 0.3555 -2.3880 0.0016 31 1 2.9682 -3.5508 -0.5885 32 1 1.7251 -5.6964 -0.6064 33 1 0.9203 -4.4829 -1.6305 34 1 -0.6424 -3.9571 0.2215 35 1 -0.7225 -5.6820 -0.2117 36 1 0.8124 -6.2233 1.6584 37 1 -1.7625 -4.9523 2.1878 38 1 -3.3514 -5.0386 3.0961 39 1 -6.6235 -6.1267 6.1796 40 1 -4.8199 -8.6993 8.8907 41 1 -2.6766 -8.6092 7.7277 42 1 -1.3212 -7.6911 5.7932 43 1 1.4055 -4.4534 3.2905 44 1 0.6001 -3.2398 2.2669 45 1 2.9675 -4.9792 1.4386 46 1 3.0481 -3.2544 1.8721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026527743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = 33.385871 kcal Electronic energy + Delta-G solvation = -28501.519898 eV Core-core repulsion = 24583.773936 eV Total energy + Delta-G solvation = -3917.745962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66277 -40.08693 -38.49624 -37.79964 -34.86120 -34.10231 -33.05456 -32.02360 -30.82225 -30.34554 -30.24285 -27.84856 -25.64251 -24.92905 -23.62120 -23.01480 -22.36187 -21.98370 -20.90427 -19.22206 -18.62328 -18.09243 -17.81438 -17.25018 -16.64603 -16.06540 -15.47376 -15.43594 -15.00184 -14.70334 -14.65800 -14.51606 -14.16893 -13.84828 -13.64813 -13.56819 -13.47474 -13.08631 -12.88168 -12.83978 -12.34293 -12.00973 -11.80155 -11.70700 -11.25114 -10.97274 -10.83076 -10.74894 -10.57881 -10.36866 -10.24561 -10.18607 -9.99642 -9.82630 -9.74675 -9.67019 -9.54479 -8.98908 -8.90901 -8.83784 -6.95575 -5.78811 -3.05898 -0.36300 0.05230 1.31740 2.19579 2.94262 3.02442 3.42036 3.48052 3.48921 3.62319 3.64979 3.92617 4.01405 4.19311 4.23174 4.30917 4.58429 4.59405 4.77987 4.96420 5.06752 5.09910 5.16582 5.26447 5.37474 5.44949 5.54985 5.58712 5.67586 5.73435 5.78137 5.85877 5.93652 5.99543 6.04588 6.07079 6.11805 6.29059 6.44729 6.51310 6.63653 6.74015 6.85742 6.99451 7.05693 7.20548 7.40463 7.48172 7.70029 8.04144 8.41000 9.52391 10.10413 10.45239 11.44120 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016263 B = 0.002307 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.267325 B =12131.780187 C =13041.792083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.117 4.117 12 C -0.124 4.124 13 C 0.149 3.851 14 N -0.712 5.712 15 C 0.561 3.439 16 O -0.534 6.534 17 C -0.169 4.169 18 C 0.162 3.838 19 N -0.455 5.455 20 C 0.081 3.919 21 C 0.164 3.836 22 N -0.469 5.469 23 C 0.072 3.928 24 C -0.133 4.133 25 C -0.087 4.087 26 C 0.006 3.994 27 C -0.119 4.119 28 C -0.130 4.130 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.400 0.600 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.050 0.950 44 H 0.079 0.921 45 H 0.045 0.955 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.397 -17.945 10.656 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.162 4.162 13 C 0.046 3.954 14 N -0.362 5.362 15 C 0.346 3.654 16 O -0.411 6.411 17 C -0.175 4.175 18 C -0.012 4.012 19 N -0.163 5.163 20 C -0.042 4.042 21 C -0.010 4.010 22 N -0.178 5.178 23 C -0.071 4.071 24 C -0.154 4.154 25 C -0.094 4.094 26 C -0.021 4.021 27 C -0.157 4.157 28 C -0.171 4.171 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.235 0.765 38 H 0.186 0.814 39 H 0.193 0.807 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.176 0.824 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.075 -17.977 11.268 23.076 hybrid contribution 1.355 0.932 -0.272 1.667 sum -7.720 -17.045 10.996 21.704 Atomic orbital electron populations 1.69634 1.05033 1.25563 1.58125 1.24693 0.95491 0.97545 1.03268 0.86234 0.78687 0.84086 0.77465 1.21825 1.21884 1.20867 1.19253 0.91011 0.84213 1.42117 0.91277 1.42462 1.05658 0.99609 1.88518 1.20260 0.94356 0.86432 0.92882 1.21725 0.95705 0.98940 0.99256 1.21756 0.99064 1.02065 0.93329 1.21153 0.84274 0.99890 0.90092 1.46101 1.15357 1.47678 1.27036 1.17902 0.87083 0.79551 0.80824 1.90789 1.33765 1.47183 1.69384 1.21211 0.96180 1.01638 0.98503 1.23244 0.86611 0.93981 0.97408 1.67912 1.26990 1.16166 1.05242 1.20081 0.94837 0.95212 0.94088 1.23179 0.95834 0.93323 0.88615 1.67467 1.31344 1.06020 1.12962 1.22317 0.88172 0.96995 0.99581 1.22005 1.00055 0.98745 0.94547 1.18957 0.94573 0.98804 0.97067 1.21932 0.96904 0.92566 0.90677 1.21753 0.97025 0.98774 0.98181 1.22104 0.96336 0.99729 0.98923 0.93604 0.78218 0.93312 0.92278 0.91376 0.90306 0.92233 0.89819 0.76488 0.81361 0.80743 0.82208 0.83687 0.82382 0.93105 0.90247 0.93656 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.90 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.23 9.93 -15.06 -0.15 -6.38 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 9 N -0.72 -16.67 4.28 -53.42 -0.23 -16.89 16 10 C 0.17 3.16 3.10 -67.93 -0.21 2.95 16 11 C -0.12 -1.76 5.61 -26.73 -0.15 -1.91 16 12 C -0.12 -1.70 5.22 -26.73 -0.14 -1.84 16 13 C 0.15 2.09 2.45 -67.93 -0.17 1.93 16 14 N -0.71 -8.62 5.03 -54.75 -0.28 -8.90 16 15 C 0.56 7.28 7.74 -12.32 -0.10 7.19 16 16 O -0.53 -8.58 16.05 5.32 0.09 -8.49 16 17 C -0.17 -1.84 5.89 -104.78 -0.62 -2.45 16 18 C 0.16 1.62 10.68 -17.06 -0.18 1.44 16 19 N -0.45 -4.98 10.33 -10.65 -0.11 -5.09 16 20 C 0.08 0.86 6.62 -84.81 -0.56 0.29 16 21 C 0.16 1.53 11.25 -16.94 -0.19 1.34 16 22 N -0.47 -4.45 10.28 -13.11 -0.13 -4.59 16 23 C 0.07 0.55 11.08 -17.96 -0.20 0.35 16 24 C -0.13 -0.99 9.88 -39.38 -0.39 -1.38 16 25 C -0.09 -0.84 5.75 -106.80 -0.61 -1.46 16 26 C 0.01 0.06 9.51 -38.48 -0.37 -0.31 16 27 C -0.12 -1.99 5.34 -26.73 -0.14 -2.13 16 28 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 29 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.38 9.26 6.06 -40.82 -0.25 9.02 16 31 H 0.05 0.93 8.08 -51.93 -0.42 0.52 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.22 6.51 -51.93 -0.34 0.89 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 37 H 0.40 3.93 6.63 -40.82 -0.27 3.66 16 38 H 0.17 1.27 6.37 -52.49 -0.33 0.94 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.16 1.41 7.71 -52.49 -0.40 1.01 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.54 7.60 -51.93 -0.39 1.14 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -32.48 376.75 -9.86 -42.34 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.15 Total: 10.60 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.42 Total: -5.27 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.02 Total: -61.84 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.48 -9.86 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026527743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.728 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds