Wall clock time and date at job start Sat Apr 11 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48507 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47180 * 299.99666 * 3 2 1 6 6 H 1.48491 * 109.47248 * 60.00133 * 3 2 1 7 7 C 1.38811 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00420 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00124 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47269 * 204.99743 * 10 9 7 12 12 C 1.52995 * 109.47371 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47051 * 59.99883 * 12 11 10 14 14 N 1.46494 * 109.47358 * 60.00321 * 13 12 11 15 15 C 1.34777 * 120.00594 * 154.99519 * 14 13 12 16 16 O 1.21529 * 119.99294 * 0.02562 * 15 14 13 17 17 C 1.47995 * 120.00269 * 180.02562 * 15 14 13 18 18 C 1.38889 * 121.17042 * 354.22550 * 17 15 14 19 19 C 1.39359 * 119.67045 * 180.02562 * 18 17 15 20 20 N 1.31093 * 121.90397 * 0.02562 * 19 18 17 21 21 C 1.33288 * 121.61879 * 0.02562 * 20 19 18 22 22 C 1.40831 * 121.91345 * 180.02562 * 21 20 19 23 23 C 1.36165 * 118.76886 * 179.97438 * 22 21 20 24 24 N 1.32534 * 121.96033 * 359.97438 * 23 22 21 25 25 C 1.31343 * 122.60457 * 0.02562 * 24 23 22 26 26 C 1.40080 * 119.87166 * 0.27484 * 25 24 23 27 27 C 1.52997 * 109.47298 * 299.99747 * 13 12 11 28 28 C 1.52995 * 109.47081 * 84.99670 * 10 9 7 29 29 H 0.97000 * 120.00074 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99456 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47051 * 324.99832 * 10 9 7 32 32 H 1.09006 * 109.46869 * 59.99795 * 11 10 9 33 33 H 1.09004 * 109.47157 * 300.00025 * 11 10 9 34 34 H 1.09004 * 109.46979 * 300.00108 * 12 11 10 35 35 H 1.09003 * 109.47489 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.46726 * 180.02562 * 13 12 11 37 37 H 0.97004 * 120.00121 * 335.00079 * 14 13 12 38 38 H 1.07999 * 120.16878 * 0.05018 * 18 17 15 39 39 H 1.08002 * 119.04119 * 180.02562 * 19 18 17 40 40 H 1.08000 * 120.61698 * 359.94837 * 22 21 20 41 41 H 1.08003 * 119.01911 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.06057 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.47205 * 179.97438 * 27 13 12 44 44 H 1.08994 * 109.47499 * 300.00268 * 27 13 12 45 45 H 1.09006 * 109.47501 * 299.99658 * 28 10 9 46 46 H 1.08994 * 109.47065 * 60.00174 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.1814 -4.7524 -0.6081 12 6 1.9462 -6.0775 -0.6063 13 6 2.3085 -6.4553 0.8313 14 7 1.0837 -6.5974 1.6224 15 6 1.0765 -7.3816 2.7185 16 8 2.0863 -7.9704 3.0509 17 6 -0.1611 -7.5255 3.5173 18 6 -1.2933 -6.7739 3.2305 19 6 -2.4417 -6.9343 4.0035 20 7 -2.4909 -7.7796 5.0043 21 6 -1.4416 -8.5317 5.3359 22 6 -1.4877 -9.4421 6.4093 23 6 -0.3780 -10.1790 6.6918 24 7 0.7386 -10.0638 5.9872 25 6 0.8539 -9.2363 4.9738 26 6 -0.2297 -8.4282 4.6062 27 6 3.1853 -5.3598 1.4411 28 6 2.4209 -4.0349 1.4391 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.9693 -3.5508 -0.5872 32 1 0.9229 -4.4830 -1.6322 33 1 0.2703 -4.8584 -0.0192 34 1 2.8575 -5.9719 -1.1949 35 1 1.3217 -6.8581 -1.0411 36 1 2.8537 -7.3992 0.8325 37 1 0.2777 -6.1272 1.3572 38 1 -1.2840 -6.0691 2.4123 39 1 -3.3165 -6.3450 3.7712 40 1 -2.3863 -9.5534 6.9979 41 1 -0.4091 -10.8787 7.5139 42 1 1.7836 -9.1760 4.4276 43 1 3.4430 -5.6288 2.4654 44 1 4.0965 -5.2541 0.8525 45 1 3.0456 -3.2544 1.8735 46 1 1.5098 -4.1409 2.0279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026534587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:56 Heat of formation + Delta-G solvation = 39.049101 kcal Electronic energy + Delta-G solvation = -29084.483930 eV Core-core repulsion = 25166.983544 eV Total energy + Delta-G solvation = -3917.500386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.70213 -40.16269 -38.34112 -38.09444 -34.87333 -33.99106 -32.89762 -31.85206 -31.12103 -30.56348 -30.34717 -27.80026 -25.78373 -24.47781 -24.00309 -23.47008 -22.35228 -21.44516 -21.04471 -19.24361 -18.82503 -18.41223 -17.54390 -17.10000 -16.48327 -15.92801 -15.63626 -15.38367 -15.16696 -14.94104 -14.79233 -14.57389 -14.21612 -13.84286 -13.71929 -13.60235 -13.33638 -13.23262 -13.06147 -12.48494 -12.34468 -12.30670 -11.99173 -11.74443 -11.11477 -10.96624 -10.93848 -10.90237 -10.66329 -10.48904 -10.26709 -10.18278 -10.05047 -9.82123 -9.67582 -9.65641 -9.54537 -9.18857 -8.92638 -8.81063 -7.01857 -5.83138 -3.11542 -0.38628 0.33859 1.23423 2.47915 2.77558 2.88552 3.38863 3.45274 3.46880 3.76606 3.78299 4.07543 4.16074 4.21968 4.35719 4.37685 4.52681 4.79863 4.83587 4.94267 4.97505 5.00479 5.10649 5.23626 5.39782 5.40865 5.44991 5.56352 5.58213 5.61004 5.63713 5.75456 5.80008 5.89614 5.95809 6.03373 6.15690 6.23618 6.28505 6.38059 6.41554 6.51832 6.64162 6.88557 7.03591 7.22469 7.36488 7.65622 7.66222 7.89235 8.35842 9.47252 10.04341 10.38458 11.39591 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.002623 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.848480 B =10672.451356 C =11523.781289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.177 3.823 11 C -0.125 4.125 12 C -0.123 4.123 13 C 0.147 3.853 14 N -0.701 5.701 15 C 0.560 3.440 16 O -0.528 6.528 17 C -0.045 4.045 18 C -0.141 4.141 19 C 0.152 3.848 20 N -0.463 5.463 21 C 0.152 3.848 22 C -0.150 4.150 23 C 0.092 3.908 24 N -0.489 5.489 25 C 0.161 3.839 26 C -0.134 4.134 27 C -0.129 4.129 28 C -0.133 4.133 29 H 0.254 0.746 30 H 0.382 0.618 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.403 0.597 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.147 0.853 41 H 0.160 0.840 42 H 0.200 0.800 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 -19.667 6.009 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.164 4.164 12 C -0.162 4.162 13 C 0.043 3.957 14 N -0.353 5.353 15 C 0.346 3.654 16 O -0.406 6.406 17 C -0.059 4.059 18 C -0.162 4.162 19 C -0.022 4.022 20 N -0.172 5.172 21 C 0.026 3.974 22 C -0.170 4.170 23 C -0.052 4.052 24 N -0.197 5.197 25 C -0.010 4.010 26 C -0.139 4.139 27 C -0.169 4.169 28 C -0.174 4.174 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.240 0.760 38 H 0.168 0.832 39 H 0.191 0.809 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.216 0.784 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.352 -20.673 7.116 21.990 hybrid contribution -0.456 2.052 -0.708 2.218 sum -2.809 -18.621 6.408 19.892 Atomic orbital electron populations 1.69656 1.05084 1.25543 1.57910 1.24725 0.95511 0.97670 1.03056 0.86155 0.78845 0.84235 0.77196 1.20564 1.21877 1.21900 1.19276 0.91010 0.84109 1.42403 0.91179 1.42419 1.05675 0.99817 1.88612 1.20229 0.94397 0.85850 0.92795 1.21828 0.98482 0.94297 1.01762 1.21818 1.01804 0.97910 0.94646 1.21107 0.84685 0.99559 0.90306 1.46071 1.15432 1.47142 1.26612 1.17990 0.87014 0.79523 0.80905 1.90593 1.34066 1.47048 1.68904 1.20384 0.94539 0.95917 0.95016 1.22603 0.93158 0.99234 1.01160 1.23193 0.97408 0.92807 0.88749 1.67879 1.28530 1.05299 1.15447 1.18933 0.88589 0.94914 0.94939 1.21712 1.01126 0.96784 0.97391 1.22411 0.87993 0.97001 0.97835 1.67749 1.26116 1.19460 1.06366 1.24466 0.98677 0.86946 0.90961 1.19668 0.97116 0.99701 0.97372 1.21937 0.98466 0.95495 1.00962 1.22229 0.99588 0.94917 1.00644 0.93585 0.78440 0.93418 0.91245 0.92849 0.90017 0.91637 0.89381 0.75958 0.83222 0.80902 0.83543 0.82305 0.78385 0.92105 0.91052 0.91983 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.13 13.06 55.49 0.72 -26.40 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.73 -16.74 5.12 -53.43 -0.27 -17.02 16 10 C 0.18 3.10 2.77 -67.94 -0.19 2.91 16 11 C -0.13 -1.68 5.22 -26.74 -0.14 -1.82 16 12 C -0.12 -1.29 5.61 -26.74 -0.15 -1.44 16 13 C 0.15 1.65 2.78 -67.94 -0.19 1.46 16 14 N -0.70 -7.49 4.19 -54.71 -0.23 -7.72 16 15 C 0.56 6.76 7.73 -12.26 -0.09 6.66 16 16 O -0.53 -7.51 13.27 5.34 0.07 -7.44 16 17 C -0.05 -0.51 5.93 -104.37 -0.62 -1.13 16 18 C -0.14 -1.27 9.60 -38.92 -0.37 -1.64 16 19 C 0.15 1.36 11.14 -17.45 -0.19 1.17 16 20 N -0.46 -5.22 10.33 -10.95 -0.11 -5.33 16 21 C 0.15 1.82 6.63 -84.88 -0.56 1.25 16 22 C -0.15 -1.50 10.08 -39.35 -0.40 -1.90 16 23 C 0.09 0.91 11.06 -17.99 -0.20 0.71 16 24 N -0.49 -6.06 10.31 -13.24 -0.14 -6.20 16 25 C 0.16 2.06 10.52 -17.07 -0.18 1.88 16 26 C -0.13 -1.65 5.77 -106.54 -0.61 -2.27 16 27 C -0.13 -1.70 5.60 -26.76 -0.15 -1.85 16 28 C -0.13 -2.16 5.34 -26.76 -0.14 -2.30 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.38 9.35 7.80 -40.82 -0.32 9.03 16 31 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.66 6.50 -51.93 -0.34 0.33 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 37 H 0.40 3.77 5.04 -40.82 -0.21 3.56 16 38 H 0.15 1.00 6.56 -52.49 -0.34 0.65 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.20 2.62 5.09 -52.49 -0.27 2.36 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.86 7.60 -51.93 -0.39 0.46 16 LS Contribution 371.77 15.07 5.60 5.60 Total: -1.00 -32.29 371.77 -9.85 -42.14 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -6.03 Total: 10.73 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -4.44 Total: -5.19 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.03 Total: -62.67 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.07 Total: -7.44 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.29 -9.85 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026534587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.190 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds