Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48507 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47180 * 299.99666 * 3 2 1 6 6 H 1.48491 * 109.47248 * 60.00133 * 3 2 1 7 7 C 1.38811 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00420 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00124 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47269 * 204.99743 * 10 9 7 12 12 C 1.52995 * 109.47371 * 180.02562 * 11 10 9 13 13 C 1.52995 * 109.47051 * 59.99883 * 12 11 10 14 14 N 1.46494 * 109.47358 * 60.00321 * 13 12 11 15 15 C 1.34777 * 120.00594 * 154.99519 * 14 13 12 16 16 O 1.21529 * 119.99294 * 0.02562 * 15 14 13 17 17 C 1.47995 * 120.00269 * 180.02562 * 15 14 13 18 18 C 1.38889 * 121.17042 * 354.22550 * 17 15 14 19 19 C 1.39359 * 119.67045 * 180.02562 * 18 17 15 20 20 N 1.31093 * 121.90397 * 0.02562 * 19 18 17 21 21 C 1.33288 * 121.61879 * 0.02562 * 20 19 18 22 22 C 1.40831 * 121.91345 * 180.02562 * 21 20 19 23 23 C 1.36165 * 118.76886 * 179.97438 * 22 21 20 24 24 N 1.32534 * 121.96033 * 359.97438 * 23 22 21 25 25 C 1.31343 * 122.60457 * 0.02562 * 24 23 22 26 26 C 1.40080 * 119.87166 * 0.27484 * 25 24 23 27 27 C 1.52997 * 109.47298 * 299.99747 * 13 12 11 28 28 C 1.52995 * 109.47081 * 84.99670 * 10 9 7 29 29 H 0.97000 * 120.00074 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99456 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47051 * 324.99832 * 10 9 7 32 32 H 1.09006 * 109.46869 * 59.99795 * 11 10 9 33 33 H 1.09004 * 109.47157 * 300.00025 * 11 10 9 34 34 H 1.09004 * 109.46979 * 300.00108 * 12 11 10 35 35 H 1.09003 * 109.47489 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.46726 * 180.02562 * 13 12 11 37 37 H 0.97004 * 120.00121 * 335.00079 * 14 13 12 38 38 H 1.07999 * 120.16878 * 0.05018 * 18 17 15 39 39 H 1.08002 * 119.04119 * 180.02562 * 19 18 17 40 40 H 1.08000 * 120.61698 * 359.94837 * 22 21 20 41 41 H 1.08003 * 119.01911 * 180.02562 * 23 22 21 42 42 H 1.08001 * 120.06057 * 180.02562 * 25 24 23 43 43 H 1.08997 * 109.47205 * 179.97438 * 27 13 12 44 44 H 1.08994 * 109.47499 * 300.00268 * 27 13 12 45 45 H 1.09006 * 109.47501 * 299.99658 * 28 10 9 46 46 H 1.08994 * 109.47065 * 60.00174 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.1814 -4.7524 -0.6081 12 6 1.9462 -6.0775 -0.6063 13 6 2.3085 -6.4553 0.8313 14 7 1.0837 -6.5974 1.6224 15 6 1.0765 -7.3816 2.7185 16 8 2.0863 -7.9704 3.0509 17 6 -0.1611 -7.5255 3.5173 18 6 -1.2933 -6.7739 3.2305 19 6 -2.4417 -6.9343 4.0035 20 7 -2.4909 -7.7796 5.0043 21 6 -1.4416 -8.5317 5.3359 22 6 -1.4877 -9.4421 6.4093 23 6 -0.3780 -10.1790 6.6918 24 7 0.7386 -10.0638 5.9872 25 6 0.8539 -9.2363 4.9738 26 6 -0.2297 -8.4282 4.6062 27 6 3.1853 -5.3598 1.4411 28 6 2.4209 -4.0349 1.4391 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.9693 -3.5508 -0.5872 32 1 0.9229 -4.4830 -1.6322 33 1 0.2703 -4.8584 -0.0192 34 1 2.8575 -5.9719 -1.1949 35 1 1.3217 -6.8581 -1.0411 36 1 2.8537 -7.3992 0.8325 37 1 0.2777 -6.1272 1.3572 38 1 -1.2840 -6.0691 2.4123 39 1 -3.3165 -6.3450 3.7712 40 1 -2.3863 -9.5534 6.9979 41 1 -0.4091 -10.8787 7.5139 42 1 1.7836 -9.1760 4.4276 43 1 3.4430 -5.6288 2.4654 44 1 4.0965 -5.2541 0.8525 45 1 3.0456 -3.2544 1.8735 46 1 1.5098 -4.1409 2.0279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026534587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = 17.968796 kcal Electronic energy + Delta-G solvation = -29085.398041 eV Core-core repulsion = 25166.983544 eV Total energy + Delta-G solvation = -3918.414497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52276 -41.12300 -39.31688 -39.04740 -36.34425 -34.90757 -34.26461 -32.65300 -32.54961 -31.68230 -31.35686 -29.23301 -26.65887 -25.62119 -25.25776 -24.55791 -23.48007 -22.46630 -22.22786 -20.35089 -19.69243 -19.27984 -19.04366 -18.27017 -17.36704 -16.93083 -16.86440 -16.51833 -16.15948 -15.94911 -15.70747 -15.57033 -15.36511 -15.19891 -14.93947 -14.76340 -14.53929 -14.12644 -13.89290 -13.87681 -13.56420 -13.10847 -13.07908 -13.02654 -12.85065 -12.80587 -12.11542 -12.01373 -12.00227 -11.76499 -11.69935 -11.52374 -11.30123 -11.09867 -10.91127 -10.81411 -10.48325 -10.39936 -10.14289 -9.61131 -8.94790 -7.92574 -5.18470 -1.19447 -0.44398 0.39736 1.46746 1.48220 1.56615 1.64276 1.89554 2.04381 2.57198 2.95177 3.06227 3.28027 3.37516 3.41292 3.43890 3.57829 3.61070 3.76224 3.87831 3.91765 4.15528 4.23845 4.28415 4.32397 4.39708 4.41095 4.52643 4.62395 4.65592 4.67633 4.69431 4.75503 4.81875 4.90639 5.05969 5.10082 5.19130 5.26889 5.28637 5.32246 5.45973 5.53599 5.57532 5.60351 5.68172 6.31633 6.35083 6.59215 6.82822 7.00839 7.38091 8.16521 8.38363 9.30781 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.002623 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.848480 B =10672.451356 C =11523.781289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.074 4.074 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.297 1.297 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.172 3.828 11 C -0.117 4.117 12 C -0.111 4.111 13 C 0.152 3.848 14 N -0.693 5.693 15 C 0.560 3.440 16 O -0.554 6.554 17 C -0.063 4.063 18 C -0.126 4.126 19 C 0.154 3.846 20 N -0.478 5.478 21 C 0.132 3.868 22 C -0.146 4.146 23 C 0.086 3.914 24 N -0.507 5.507 25 C 0.143 3.857 26 C -0.149 4.149 27 C -0.121 4.121 28 C -0.121 4.121 29 H 0.249 0.751 30 H 0.374 0.626 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.411 0.589 38 H 0.176 0.824 39 H 0.210 0.790 40 H 0.170 0.830 41 H 0.192 0.808 42 H 0.188 0.812 43 H 0.050 0.950 44 H 0.081 0.919 45 H 0.030 0.970 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.833 -20.602 5.659 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.064 3.936 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.048 3.952 14 N -0.345 5.345 15 C 0.347 3.653 16 O -0.434 6.434 17 C -0.077 4.077 18 C -0.146 4.146 19 C -0.020 4.020 20 N -0.186 5.186 21 C 0.007 3.993 22 C -0.166 4.166 23 C -0.059 4.059 24 N -0.216 5.216 25 C -0.028 4.028 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.162 4.162 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.250 0.750 38 H 0.193 0.807 39 H 0.226 0.774 40 H 0.187 0.813 41 H 0.209 0.791 42 H 0.204 0.796 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.049 0.951 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.026 -21.643 6.757 22.875 hybrid contribution -0.243 2.311 -0.576 2.394 sum -3.269 -19.332 6.181 20.558 Atomic orbital electron populations 1.69779 1.06244 1.25697 1.60017 1.25404 0.96312 1.00561 1.04360 0.85240 0.78288 0.80743 0.76542 1.19448 1.22143 1.22445 1.19587 0.91206 0.85488 1.40091 0.91231 1.42612 1.05468 1.00887 1.88516 1.20471 0.94467 0.85089 0.93570 1.21714 0.98478 0.94171 1.01145 1.21760 1.02357 0.96665 0.94139 1.21061 0.84627 0.98918 0.90607 1.45994 1.15593 1.46769 1.26162 1.18141 0.86997 0.79189 0.80979 1.90587 1.35090 1.48135 1.69585 1.20369 0.95025 0.96961 0.95299 1.22931 0.92207 0.98315 1.01196 1.23844 0.98435 0.92072 0.87639 1.67944 1.28315 1.05932 1.16435 1.19245 0.88679 0.95756 0.95667 1.22023 1.01916 0.95833 0.96841 1.22911 0.87248 0.97490 0.98227 1.67718 1.27530 1.19676 1.06641 1.24301 0.98760 0.88042 0.91695 1.19766 0.97289 1.00185 0.98129 1.21850 0.98935 0.94305 1.00923 1.22014 0.99210 0.95693 0.99252 0.94182 0.79406 0.94283 0.91738 0.91654 0.89039 0.88943 0.88697 0.75043 0.80672 0.77371 0.81275 0.79125 0.79568 0.93087 0.90057 0.95122 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.68 13.06 21.65 0.28 -56.40 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 3 Si 0.96 45.18 29.55 68.60 2.03 47.21 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 7 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 8 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 9 N -0.74 -33.85 5.12 -322.95 -1.65 -35.50 16 10 C 0.17 5.86 2.77 44.99 0.12 5.99 16 11 C -0.12 -2.86 5.22 30.59 0.16 -2.70 16 12 C -0.11 -1.96 5.61 30.59 0.17 -1.79 16 13 C 0.15 3.06 2.78 44.99 0.13 3.18 16 14 N -0.69 -13.48 4.19 -445.29 -1.87 -15.34 16 15 C 0.56 13.08 7.73 86.83 0.67 13.76 16 16 O -0.55 -15.84 13.27 -3.81 -0.05 -15.89 16 17 C -0.06 -1.37 5.93 -19.70 -0.12 -1.49 16 18 C -0.13 -1.99 9.60 22.70 0.22 -1.77 16 19 C 0.15 2.37 11.14 85.07 0.95 3.32 16 20 N -0.48 -9.95 10.33 -188.55 -1.95 -11.90 16 21 C 0.13 3.04 6.63 40.45 0.27 3.31 16 22 C -0.15 -2.76 10.08 22.42 0.23 -2.53 16 23 C 0.09 1.62 11.06 84.10 0.93 2.55 16 24 N -0.51 -12.69 10.31 -195.81 -2.02 -14.71 16 25 C 0.14 3.77 10.52 85.21 0.90 4.66 16 26 C -0.15 -3.67 5.77 -21.11 -0.12 -3.80 16 27 C -0.12 -3.03 5.60 30.58 0.17 -2.86 16 28 C -0.12 -3.87 5.34 30.58 0.16 -3.71 16 29 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.37 18.28 7.80 -92.71 -0.72 17.56 16 31 H 0.04 1.40 8.08 -2.38 -0.02 1.39 16 32 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.06 1.45 6.50 -2.38 -0.02 1.43 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 1.91 7.58 -2.39 -0.02 1.89 16 37 H 0.41 6.58 5.04 -92.71 -0.47 6.11 16 38 H 0.18 1.77 6.56 -2.91 -0.02 1.75 16 39 H 0.21 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.19 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.19 5.24 5.09 -2.91 -0.01 5.23 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.05 1.57 7.60 -2.39 -0.02 1.55 16 Total: -1.00 -71.35 371.77 0.75 -70.59 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: -0.16 Total: 30.88 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 6.13 Total: 1.05 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -7.20 Total: -133.85 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.05 Total: -15.89 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.35 0.75 -70.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026534587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.564 kcal (2) G-P(sol) polarization free energy of solvation -71.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds