Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48496 * 109.47246 * 5.51938 * 3 2 1 5 5 H 1.48507 * 109.46870 * 245.51817 * 3 2 1 6 6 H 1.48504 * 109.47057 * 125.51912 * 3 2 1 7 7 C 1.38814 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 3.75950 * 7 2 1 9 9 N 1.36936 * 119.99569 * 183.75817 * 7 2 1 10 10 C 1.47423 * 125.65019 * 326.89519 * 9 7 2 11 11 C 1.54914 * 104.83225 * 204.09602 * 10 9 7 12 12 C 1.55153 * 101.58084 * 322.99496 * 11 10 9 13 13 C 1.47023 * 125.64594 * 146.59669 * 9 7 2 14 14 H 1.09004 * 109.88565 * 59.55240 * 13 9 7 15 15 C 1.52996 * 109.87925 * 298.38746 * 13 9 7 16 16 N 1.46501 * 109.47332 * 59.15913 * 15 13 9 17 17 C 1.34772 * 120.00292 * 186.53748 * 16 15 13 18 18 O 1.21572 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.47671 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.39702 * 120.07701 * 359.71923 * 19 17 16 21 21 C 1.37729 * 119.92134 * 179.76744 * 20 19 17 22 22 C 1.39050 * 120.07411 * 0.49186 * 21 20 19 23 23 N 1.39836 * 119.91958 * 179.76664 * 22 21 20 24 24 C 1.35838 * 126.10282 * 0.02562 * 23 22 21 25 25 C 1.35291 * 107.61471 * 179.97438 * 24 23 22 26 26 C 1.39951 * 107.96750 * 359.97438 * 25 24 23 27 27 N 1.30829 * 108.36638 * 359.76023 * 26 25 24 28 28 C 1.39060 * 120.16064 * 359.78503 * 22 21 20 29 29 C 1.37725 * 120.07474 * 359.95611 * 28 22 21 30 30 H 0.96994 * 119.99997 * 185.03969 * 1 2 3 31 31 H 1.08996 * 110.36942 * 322.93607 * 10 9 7 32 32 H 1.09000 * 110.36462 * 85.25730 * 10 9 7 33 33 H 1.09000 * 111.00039 * 81.06228 * 11 10 9 34 34 H 1.08993 * 111.00238 * 204.87880 * 11 10 9 35 35 H 1.09001 * 110.72371 * 153.86635 * 12 11 10 36 36 H 1.09008 * 110.71893 * 276.95879 * 12 11 10 37 37 H 1.09003 * 109.47129 * 179.15407 * 15 13 9 38 38 H 1.09000 * 109.47724 * 299.16183 * 15 13 9 39 39 H 0.97001 * 119.99822 * 6.53814 * 16 15 13 40 40 H 1.08004 * 120.03932 * 0.02562 * 20 19 17 41 41 H 1.07999 * 119.95866 * 180.27826 * 21 20 19 42 42 H 1.07998 * 126.19477 * 359.97438 * 24 23 22 43 43 H 1.08001 * 126.01347 * 180.02562 * 25 24 23 44 44 H 1.08007 * 125.81333 * 179.97438 * 26 25 24 45 45 H 1.07997 * 119.95959 * 179.97438 * 28 22 21 46 46 H 1.07991 * 120.03536 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2908 2.7432 0.1347 5 1 3.0002 1.7563 -1.2743 6 1 3.2021 1.6398 1.1396 7 6 2.0103 -1.2022 0.0005 8 1 1.4720 -2.1364 -0.0604 9 7 3.3774 -1.2033 0.0783 10 6 4.2714 -0.1799 -0.4934 11 6 5.6263 -0.9039 -0.6933 12 6 5.6747 -1.8244 0.5547 13 6 4.1965 -2.2222 0.7510 14 1 4.0148 -3.1991 0.3030 15 6 3.8586 -2.2597 2.2427 16 7 2.4367 -2.5685 2.4138 17 6 1.8804 -2.5245 3.6405 18 8 2.5583 -2.2281 4.6051 19 6 0.4473 -2.8364 3.8129 20 6 -0.3346 -3.1715 2.7047 21 6 -1.6697 -3.4665 2.8699 22 6 -2.2419 -3.4211 4.1364 23 7 -3.5989 -3.7164 4.2996 24 6 -4.4674 -4.0607 3.3135 25 6 -5.6766 -4.2638 3.8854 26 6 -5.5471 -4.0385 5.2606 27 7 -4.3038 -3.7165 5.5103 28 6 -1.4680 -3.0822 5.2409 29 6 -0.1310 -2.7913 5.0839 30 1 -0.4850 -0.8367 0.0738 31 1 3.8840 0.1707 -1.4499 32 1 4.3854 0.6539 0.1993 33 1 5.6238 -1.4909 -1.6118 34 1 6.4532 -0.1938 -0.6881 35 1 6.2906 -2.7030 0.3624 36 1 6.0447 -1.2784 1.4226 37 1 4.4584 -3.0271 2.7320 38 1 4.0757 -1.2892 2.6890 39 1 1.8957 -2.8047 1.6440 40 1 0.1084 -3.2033 1.7202 41 1 -2.2737 -3.7301 2.0142 42 1 -4.2348 -4.1553 2.2632 43 1 -6.5822 -4.5501 3.3713 44 1 -6.3379 -4.1203 5.9917 45 1 -1.9159 -3.0475 6.2230 46 1 0.4694 -2.5286 5.9421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027931533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 103.150108 kcal Electronic energy + Delta-G solvation = -29247.340654 eV Core-core repulsion = 25332.619896 eV Total energy + Delta-G solvation = -3914.720758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58506 -39.80592 -38.43528 -37.62677 -34.04155 -33.51984 -32.87098 -31.35930 -30.19023 -29.94180 -29.90011 -28.69248 -25.23009 -24.11983 -23.30143 -22.97267 -21.46709 -20.93379 -20.59239 -19.80853 -19.45780 -18.46539 -17.81955 -16.97838 -15.90185 -15.64056 -15.35161 -15.25851 -15.10110 -14.62268 -14.52144 -14.38961 -13.74997 -13.67190 -13.53005 -13.40934 -13.20535 -12.93548 -12.85523 -12.45782 -12.38061 -12.33060 -11.77167 -11.40032 -11.23699 -11.08851 -11.05195 -10.80575 -10.70671 -10.54528 -10.34484 -9.92095 -9.49013 -9.42847 -9.28500 -9.27879 -9.05393 -8.76320 -8.39981 -8.04267 -7.11577 -6.36666 -3.55836 0.55661 1.35932 1.92813 2.24710 2.61320 3.22234 3.34830 3.44604 3.62031 3.73585 4.07889 4.32988 4.48799 4.59727 4.82763 4.87290 4.90136 5.06607 5.13931 5.21116 5.25428 5.33799 5.39736 5.41438 5.49467 5.55736 5.61564 5.74773 5.78423 5.87542 5.97502 6.06322 6.06973 6.15741 6.17875 6.22115 6.28822 6.35206 6.41386 6.50612 6.57108 6.62926 6.71514 6.79915 7.05370 7.08708 7.46553 7.71234 8.15787 8.19053 8.76034 8.84483 9.37990 10.16149 10.99920 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.003075 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.546982 B = 9103.497002 C =10070.329583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.001 4.001 3 Si 1.072 2.928 4 H -0.301 1.301 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.329 4.329 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.094 3.906 11 C -0.130 4.130 12 C -0.124 4.124 13 C 0.145 3.855 14 H 0.043 0.957 15 C 0.117 3.883 16 N -0.690 5.690 17 C 0.553 3.447 18 O -0.560 6.560 19 C -0.131 4.131 20 C -0.044 4.044 21 C -0.144 4.144 22 C 0.174 3.826 23 N -0.322 5.322 24 C 0.057 3.943 25 C -0.264 4.264 26 C 0.052 3.948 27 N -0.289 5.289 28 C -0.132 4.132 29 C -0.040 4.040 30 H 0.262 0.738 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.409 0.591 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.180 0.820 43 H 0.154 0.846 44 H 0.189 0.811 45 H 0.140 0.860 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 -9.234 3.960 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.204 4.204 3 Si 0.905 3.095 4 H -0.229 1.229 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.456 4.456 8 H 0.083 0.917 9 N -0.330 5.330 10 C -0.030 4.030 11 C -0.168 4.168 12 C -0.162 4.162 13 C 0.038 3.962 14 H 0.060 0.940 15 C -0.009 4.009 16 N -0.342 5.342 17 C 0.340 3.660 18 O -0.441 6.441 19 C -0.135 4.135 20 C -0.064 4.064 21 C -0.165 4.165 22 C 0.081 3.919 23 N -0.097 5.097 24 C -0.085 4.085 25 C -0.292 4.292 26 C -0.135 4.135 27 N -0.108 5.108 28 C -0.152 4.152 29 C -0.059 4.059 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.249 0.751 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.197 0.803 43 H 0.172 0.828 44 H 0.205 0.795 45 H 0.158 0.842 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.894 -7.060 5.383 9.078 hybrid contribution -0.844 -1.874 -1.058 2.311 sum -2.738 -8.934 4.325 10.297 Atomic orbital electron populations 1.70959 1.05899 1.29462 1.48876 1.26112 0.96371 1.01585 0.96335 0.83755 0.73605 0.75740 0.76437 1.22888 1.21618 1.21610 1.19723 0.79160 0.94442 1.52306 0.91747 1.44724 1.02122 1.25528 1.60660 1.22301 0.90166 0.93098 0.97467 1.22703 0.97865 0.98562 0.97690 1.22516 0.95695 0.99474 0.98523 1.21314 0.90717 0.94127 0.90077 0.93966 1.21917 0.80778 1.00033 0.98215 1.45978 1.11695 1.67742 1.08803 1.18099 0.86557 0.77793 0.83599 1.90704 1.63481 1.50054 1.39842 1.20123 0.94545 1.04578 0.94268 1.21209 0.92568 0.93829 0.98748 1.20679 0.95905 1.05087 0.94808 1.17698 0.79524 0.99581 0.95056 1.46010 1.06725 1.51494 1.05506 1.22861 0.90041 0.99785 0.95859 1.21602 0.98634 1.14597 0.94403 1.24070 0.94466 0.98326 0.96676 1.77416 1.05930 1.23795 1.03654 1.20768 0.93477 1.02651 0.98258 1.21127 0.93513 0.94246 0.97047 0.92826 0.92085 0.95127 0.91490 0.91718 0.91475 0.91338 0.93034 0.91789 0.75081 0.84265 0.84764 0.80289 0.82849 0.79455 0.84171 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.01 13.70 55.49 0.76 -25.25 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 3 Si 1.07 25.91 24.69 -169.99 -4.20 21.72 16 4 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 5 H -0.29 -6.44 5.97 56.52 0.34 -6.11 16 6 H -0.29 -6.90 6.40 56.52 0.36 -6.54 16 7 C -0.33 -8.13 8.37 -15.06 -0.13 -8.25 16 8 H 0.07 1.63 7.03 -52.49 -0.37 1.26 16 9 N -0.60 -13.16 2.91 -162.57 -0.47 -13.64 16 10 C 0.09 1.89 4.63 -2.53 -0.01 1.88 16 11 C -0.13 -2.01 7.09 -24.58 -0.17 -2.18 16 12 C -0.12 -1.84 6.48 -24.90 -0.16 -2.00 16 13 C 0.15 2.63 3.37 -66.95 -0.23 2.40 16 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.12 2.18 5.23 -4.04 -0.02 2.16 16 16 N -0.69 -13.43 4.74 -61.31 -0.29 -13.72 16 17 C 0.55 11.09 7.77 -12.41 -0.10 10.99 16 18 O -0.56 -12.50 16.32 5.30 0.09 -12.42 16 19 C -0.13 -2.32 5.88 -104.95 -0.62 -2.93 16 20 C -0.04 -0.71 9.53 -39.22 -0.37 -1.08 16 21 C -0.14 -2.06 9.44 -39.47 -0.37 -2.44 16 22 C 0.17 2.59 6.69 -83.60 -0.56 2.03 16 23 N -0.32 -4.51 3.81 -10.55 -0.04 -4.55 16 24 C 0.06 0.64 10.81 -16.83 -0.18 0.46 16 25 C -0.26 -2.62 10.80 -39.99 -0.43 -3.06 16 26 C 0.05 0.56 12.02 -17.34 -0.21 0.35 16 27 N -0.29 -4.03 11.85 30.64 0.36 -3.67 16 28 C -0.13 -1.97 9.64 -39.46 -0.38 -2.35 16 29 C -0.04 -0.64 9.58 -39.22 -0.38 -1.01 16 30 H 0.26 7.20 8.73 -40.82 -0.36 6.84 16 31 H 0.06 1.29 6.27 -51.93 -0.33 0.96 16 32 H 0.03 0.65 5.13 -51.93 -0.27 0.39 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.99 7.83 -51.92 -0.41 0.58 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.34 8.09 -51.93 -0.42 0.92 16 39 H 0.41 7.89 3.95 -40.82 -0.16 7.73 16 40 H 0.14 2.24 6.39 -52.48 -0.34 1.90 16 41 H 0.13 1.57 6.73 -52.49 -0.35 1.21 16 42 H 0.18 1.52 7.04 -52.49 -0.37 1.15 16 43 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.19 1.29 8.06 -52.48 -0.42 0.86 16 45 H 0.14 1.95 7.68 -52.49 -0.40 1.55 16 46 H 0.14 2.19 7.64 -52.49 -0.40 1.79 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -32.29 369.67 -8.66 -40.95 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.03 Total: 10.17 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -4.41 Total: -5.15 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: 0.32 Total: -60.83 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -4.20 Total: 21.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.29 -8.66 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027931533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.099 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds