Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48496 * 109.47246 * 5.51938 * 3 2 1 5 5 H 1.48507 * 109.46870 * 245.51817 * 3 2 1 6 6 H 1.48504 * 109.47057 * 125.51912 * 3 2 1 7 7 C 1.38814 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99563 * 3.75950 * 7 2 1 9 9 N 1.36936 * 119.99569 * 183.75817 * 7 2 1 10 10 C 1.47423 * 125.65019 * 326.89519 * 9 7 2 11 11 C 1.54914 * 104.83225 * 204.09602 * 10 9 7 12 12 C 1.55153 * 101.58084 * 322.99496 * 11 10 9 13 13 C 1.47023 * 125.64594 * 146.59669 * 9 7 2 14 14 H 1.09004 * 109.88565 * 59.55240 * 13 9 7 15 15 C 1.52996 * 109.87925 * 298.38746 * 13 9 7 16 16 N 1.46501 * 109.47332 * 59.15913 * 15 13 9 17 17 C 1.34772 * 120.00292 * 186.53748 * 16 15 13 18 18 O 1.21572 * 120.00037 * 0.02562 * 17 16 15 19 19 C 1.47671 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.39702 * 120.07701 * 359.71923 * 19 17 16 21 21 C 1.37729 * 119.92134 * 179.76744 * 20 19 17 22 22 C 1.39050 * 120.07411 * 0.49186 * 21 20 19 23 23 N 1.39836 * 119.91958 * 179.76664 * 22 21 20 24 24 C 1.35838 * 126.10282 * 0.02562 * 23 22 21 25 25 C 1.35291 * 107.61471 * 179.97438 * 24 23 22 26 26 C 1.39951 * 107.96750 * 359.97438 * 25 24 23 27 27 N 1.30829 * 108.36638 * 359.76023 * 26 25 24 28 28 C 1.39060 * 120.16064 * 359.78503 * 22 21 20 29 29 C 1.37725 * 120.07474 * 359.95611 * 28 22 21 30 30 H 0.96994 * 119.99997 * 185.03969 * 1 2 3 31 31 H 1.08996 * 110.36942 * 322.93607 * 10 9 7 32 32 H 1.09000 * 110.36462 * 85.25730 * 10 9 7 33 33 H 1.09000 * 111.00039 * 81.06228 * 11 10 9 34 34 H 1.08993 * 111.00238 * 204.87880 * 11 10 9 35 35 H 1.09001 * 110.72371 * 153.86635 * 12 11 10 36 36 H 1.09008 * 110.71893 * 276.95879 * 12 11 10 37 37 H 1.09003 * 109.47129 * 179.15407 * 15 13 9 38 38 H 1.09000 * 109.47724 * 299.16183 * 15 13 9 39 39 H 0.97001 * 119.99822 * 6.53814 * 16 15 13 40 40 H 1.08004 * 120.03932 * 0.02562 * 20 19 17 41 41 H 1.07999 * 119.95866 * 180.27826 * 21 20 19 42 42 H 1.07998 * 126.19477 * 359.97438 * 24 23 22 43 43 H 1.08001 * 126.01347 * 180.02562 * 25 24 23 44 44 H 1.08007 * 125.81333 * 179.97438 * 26 25 24 45 45 H 1.07997 * 119.95959 * 179.97438 * 28 22 21 46 46 H 1.07991 * 120.03536 * 180.02562 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2908 2.7432 0.1347 5 1 3.0002 1.7563 -1.2743 6 1 3.2021 1.6398 1.1396 7 6 2.0103 -1.2022 0.0005 8 1 1.4720 -2.1364 -0.0604 9 7 3.3774 -1.2033 0.0783 10 6 4.2714 -0.1799 -0.4934 11 6 5.6263 -0.9039 -0.6933 12 6 5.6747 -1.8244 0.5547 13 6 4.1965 -2.2222 0.7510 14 1 4.0148 -3.1991 0.3030 15 6 3.8586 -2.2597 2.2427 16 7 2.4367 -2.5685 2.4138 17 6 1.8804 -2.5245 3.6405 18 8 2.5583 -2.2281 4.6051 19 6 0.4473 -2.8364 3.8129 20 6 -0.3346 -3.1715 2.7047 21 6 -1.6697 -3.4665 2.8699 22 6 -2.2419 -3.4211 4.1364 23 7 -3.5989 -3.7164 4.2996 24 6 -4.4674 -4.0607 3.3135 25 6 -5.6766 -4.2638 3.8854 26 6 -5.5471 -4.0385 5.2606 27 7 -4.3038 -3.7165 5.5103 28 6 -1.4680 -3.0822 5.2409 29 6 -0.1310 -2.7913 5.0839 30 1 -0.4850 -0.8367 0.0738 31 1 3.8840 0.1707 -1.4499 32 1 4.3854 0.6539 0.1993 33 1 5.6238 -1.4909 -1.6118 34 1 6.4532 -0.1938 -0.6881 35 1 6.2906 -2.7030 0.3624 36 1 6.0447 -1.2784 1.4226 37 1 4.4584 -3.0271 2.7320 38 1 4.0757 -1.2892 2.6890 39 1 1.8957 -2.8047 1.6440 40 1 0.1084 -3.2033 1.7202 41 1 -2.2737 -3.7301 2.0142 42 1 -4.2348 -4.1553 2.2632 43 1 -6.5822 -4.5501 3.3713 44 1 -6.3379 -4.1203 5.9917 45 1 -1.9159 -3.0475 6.2230 46 1 0.4694 -2.5286 5.9421 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027931533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = 83.133847 kcal Electronic energy + Delta-G solvation = -29248.208624 eV Core-core repulsion = 25332.619896 eV Total energy + Delta-G solvation = -3915.588728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51948 -41.21970 -39.81496 -39.08533 -35.59897 -34.79681 -34.58759 -32.53462 -31.63426 -31.24122 -31.13181 -29.93239 -26.66552 -25.63290 -24.74344 -24.15790 -22.81910 -22.12947 -21.54489 -21.28960 -20.87861 -19.81143 -19.32977 -18.45624 -17.37556 -17.10889 -16.74779 -16.35243 -16.31108 -16.00644 -15.87788 -15.62041 -15.38222 -15.12373 -14.88716 -14.74992 -14.46720 -14.35349 -13.89820 -13.68623 -13.67898 -13.60081 -13.33004 -12.94318 -12.71175 -12.64429 -12.37610 -12.15849 -12.00298 -11.76664 -11.46111 -11.43643 -11.24796 -11.16451 -11.02555 -10.69188 -10.27380 -10.22036 -9.96610 -9.15748 -8.99916 -8.36893 -5.53798 -0.62370 0.14678 0.89085 1.28166 1.39937 1.49530 1.66451 1.81321 1.85455 2.27631 2.53961 2.73047 3.21998 3.33524 3.36665 3.61403 3.71492 3.79960 3.88459 3.91402 4.01502 4.08471 4.16764 4.21854 4.33130 4.37165 4.44446 4.55468 4.64073 4.69414 4.75044 4.77670 4.81476 4.95109 5.02614 5.03603 5.04660 5.05843 5.15927 5.18289 5.27627 5.41860 5.48281 5.55086 5.67325 5.79082 6.05388 6.28353 6.56980 6.58751 6.90381 7.19697 7.48873 8.26634 8.97662 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.003075 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.546982 B = 9103.497002 C =10070.329583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.051 4.051 3 Si 1.095 2.905 4 H -0.321 1.321 5 H -0.261 1.261 6 H -0.290 1.290 7 C -0.298 4.298 8 H 0.056 0.944 9 N -0.623 5.623 10 C 0.082 3.918 11 C -0.117 4.117 12 C -0.115 4.115 13 C 0.142 3.858 14 H 0.052 0.948 15 C 0.117 3.883 16 N -0.693 5.693 17 C 0.548 3.452 18 O -0.591 6.591 19 C -0.159 4.159 20 C -0.046 4.046 21 C -0.143 4.143 22 C 0.182 3.818 23 N -0.343 5.343 24 C 0.041 3.959 25 C -0.255 4.255 26 C 0.059 3.941 27 N -0.332 5.332 28 C -0.136 4.136 29 C -0.040 4.040 30 H 0.256 0.744 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.409 0.591 40 H 0.135 0.865 41 H 0.162 0.838 42 H 0.203 0.797 43 H 0.187 0.813 44 H 0.224 0.776 45 H 0.148 0.852 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -10.604 3.223 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.248 4.248 3 Si 0.926 3.074 4 H -0.250 1.250 5 H -0.186 1.186 6 H -0.217 1.217 7 C -0.427 4.427 8 H 0.073 0.927 9 N -0.349 5.349 10 C -0.042 4.042 11 C -0.155 4.155 12 C -0.153 4.153 13 C 0.036 3.964 14 H 0.070 0.930 15 C -0.009 4.009 16 N -0.343 5.343 17 C 0.336 3.664 18 O -0.474 6.474 19 C -0.163 4.163 20 C -0.065 4.065 21 C -0.163 4.163 22 C 0.088 3.912 23 N -0.119 5.119 24 C -0.099 4.099 25 C -0.283 4.283 26 C -0.129 4.129 27 N -0.150 5.150 28 C -0.156 4.156 29 C -0.060 4.060 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.248 0.752 40 H 0.152 0.848 41 H 0.179 0.821 42 H 0.220 0.780 43 H 0.204 0.796 44 H 0.240 0.760 45 H 0.166 0.834 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.677 -8.457 4.613 9.778 hybrid contribution -1.043 -1.576 -0.788 2.048 sum -2.720 -10.033 3.825 11.077 Atomic orbital electron populations 1.70997 1.06864 1.29195 1.52615 1.26782 0.96525 1.03806 0.97689 0.83472 0.72806 0.73429 0.77651 1.25045 1.18619 1.21735 1.19684 0.80867 0.93538 1.48593 0.92676 1.44921 1.01643 1.26626 1.61745 1.22387 0.92543 0.93004 0.96290 1.22670 0.95632 0.98765 0.98403 1.22553 0.93407 1.00876 0.98505 1.21518 0.92525 0.93432 0.88960 0.93040 1.21959 0.80707 0.99355 0.98878 1.46035 1.12164 1.67487 1.08662 1.18497 0.87512 0.77099 0.83291 1.90665 1.64462 1.51669 1.40619 1.20038 0.93540 1.07212 0.95469 1.21185 0.93346 0.93974 0.98007 1.20879 0.95304 1.04442 0.95688 1.17818 0.80465 0.97990 0.94967 1.46089 1.06454 1.53013 1.06379 1.23501 0.90239 0.99453 0.96724 1.22077 0.99217 1.12890 0.94112 1.24816 0.94108 0.95942 0.98013 1.77401 1.07485 1.25787 1.04317 1.20831 0.93012 1.02774 0.98934 1.21145 0.94058 0.94205 0.96543 0.93465 0.93417 0.96223 0.90315 0.88831 0.87897 0.90815 0.90847 0.94362 0.75154 0.84777 0.82084 0.77979 0.79606 0.75982 0.83416 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.00 13.70 21.65 0.30 -55.70 16 2 C -0.05 -2.78 5.50 84.86 0.47 -2.31 16 3 Si 1.10 53.19 24.69 68.60 1.69 54.88 16 4 H -0.32 -16.50 7.11 99.48 0.71 -15.80 16 5 H -0.26 -11.28 5.97 99.48 0.59 -10.69 16 6 H -0.29 -13.90 6.40 99.48 0.64 -13.27 16 7 C -0.30 -14.86 8.37 84.03 0.70 -14.15 16 8 H 0.06 2.84 7.03 -2.91 -0.02 2.82 16 9 N -0.62 -26.61 2.91 -668.25 -1.94 -28.55 16 10 C 0.08 3.15 4.63 86.86 0.40 3.55 16 11 C -0.12 -3.16 7.09 31.99 0.23 -2.94 16 12 C -0.12 -2.99 6.48 31.78 0.21 -2.79 16 13 C 0.14 4.89 3.37 45.34 0.15 5.04 16 14 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 15 C 0.12 4.31 5.23 86.38 0.45 4.76 16 16 N -0.69 -27.50 4.74 -466.15 -2.21 -29.71 16 17 C 0.55 22.81 7.77 86.74 0.67 23.48 16 18 O -0.59 -27.35 16.32 -3.94 -0.06 -27.41 16 19 C -0.16 -5.83 5.88 -20.08 -0.12 -5.95 16 20 C -0.05 -1.51 9.53 22.50 0.21 -1.30 16 21 C -0.14 -4.06 9.44 22.34 0.21 -3.85 16 22 C 0.18 5.37 6.69 38.26 0.26 5.63 16 23 N -0.34 -9.27 3.81 -187.28 -0.71 -9.98 16 24 C 0.04 0.84 10.81 83.39 0.90 1.74 16 25 C -0.26 -4.28 10.80 22.00 0.24 -4.05 16 26 C 0.06 1.10 12.02 85.26 1.02 2.13 16 27 N -0.33 -8.86 11.85 -56.97 -0.67 -9.53 16 28 C -0.14 -4.14 9.64 22.35 0.22 -3.92 16 29 C -0.04 -1.33 9.58 22.50 0.22 -1.12 16 30 H 0.26 14.59 8.73 -92.71 -0.81 13.78 16 31 H 0.05 1.94 6.27 -2.39 -0.01 1.93 16 32 H 0.02 0.82 5.13 -2.39 -0.01 0.81 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 1.87 7.83 -2.38 -0.02 1.85 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.04 1.61 8.09 -2.39 -0.02 1.59 16 39 H 0.41 16.16 3.95 -92.71 -0.37 15.79 16 40 H 0.13 4.50 6.39 -2.91 -0.02 4.48 16 41 H 0.16 3.57 6.73 -2.91 -0.02 3.55 16 42 H 0.20 2.92 7.04 -2.91 -0.02 2.90 16 43 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 44 H 0.22 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.15 4.20 7.68 -2.91 -0.02 4.18 16 46 H 0.14 4.64 7.64 -2.92 -0.02 4.62 16 Total: -1.00 -72.67 369.67 3.26 -69.42 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.43 Total: 32.65 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 6.44 Total: 3.95 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -5.24 Total: -133.48 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 1.69 Total: 54.88 kcal Total: -72.67 3.26 -69.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027931533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.550 kcal (2) G-P(sol) polarization free energy of solvation -72.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds