Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99821 * 2 1 4 4 H 1.48501 * 109.46673 * 239.99785 * 3 2 1 5 5 H 1.48496 * 109.47549 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47252 * 120.00435 * 3 2 1 7 7 C 1.38814 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99390 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99956 * 0.02562 * 7 2 1 10 10 C 1.47743 * 125.82738 * 14.22525 * 9 7 2 11 11 C 1.54912 * 104.84129 * 155.83074 * 10 9 7 12 12 C 1.55157 * 101.58095 * 37.10026 * 11 10 9 13 13 C 1.47024 * 125.64516 * 194.32233 * 9 7 2 14 14 H 1.08996 * 109.88521 * 300.59922 * 13 9 7 15 15 C 1.53002 * 109.87895 * 61.60709 * 13 9 7 16 16 N 1.46503 * 109.46998 * 182.57125 * 15 13 9 17 17 C 1.34772 * 120.00174 * 185.13206 * 16 15 13 18 18 O 1.21582 * 120.00219 * 0.02562 * 17 16 15 19 19 C 1.47667 * 119.99983 * 180.02562 * 17 16 15 20 20 C 1.39716 * 120.07740 * 179.97438 * 19 17 16 21 21 C 1.37722 * 119.92037 * 180.02562 * 20 19 17 22 22 C 1.39054 * 120.07999 * 0.03049 * 21 20 19 23 23 N 1.39828 * 119.92266 * 179.97438 * 22 21 20 24 24 C 1.35838 * 126.10275 * 179.97438 * 23 22 21 25 25 C 1.35282 * 107.61615 * 180.30059 * 24 23 22 26 26 C 1.39961 * 107.96726 * 359.58384 * 25 24 23 27 27 N 1.30820 * 108.36294 * 0.42459 * 26 25 24 28 28 C 1.39061 * 120.15658 * 0.24555 * 22 21 20 29 29 C 1.37727 * 120.07545 * 359.45291 * 28 22 21 30 30 H 0.97001 * 119.99568 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.28835 * 37.03139 * 10 9 7 32 32 H 1.08997 * 110.52976 * 274.76239 * 10 9 7 33 33 H 1.08995 * 111.00443 * 279.02159 * 11 10 9 34 34 H 1.09002 * 110.99942 * 155.17148 * 11 10 9 35 35 H 1.08994 * 110.71956 * 206.13225 * 12 11 10 36 36 H 1.09002 * 110.87248 * 82.92419 * 12 11 10 37 37 H 1.09002 * 109.47653 * 62.57746 * 15 13 9 38 38 H 1.09000 * 109.47523 * 302.56885 * 15 13 9 39 39 H 0.96999 * 120.00106 * 5.13710 * 16 15 13 40 40 H 1.07999 * 120.03676 * 0.02562 * 20 19 17 41 41 H 1.07999 * 119.95729 * 179.97438 * 21 20 19 42 42 H 1.08002 * 126.19119 * 0.03614 * 24 23 22 43 43 H 1.08001 * 126.01665 * 179.73532 * 25 24 23 44 44 H 1.07999 * 125.81661 * 180.17034 * 26 25 24 45 45 H 1.07990 * 119.96181 * 179.72738 * 28 22 21 46 46 H 1.07994 * 120.04186 * 180.27597 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1124 -2.5564 -0.2943 11 6 -0.2505 -4.0239 -0.7709 12 6 0.7675 -4.7475 0.1496 13 6 1.8995 -3.7088 0.2966 14 1 2.7006 -3.9314 -0.4081 15 6 2.4435 -3.7310 1.7265 16 7 3.0676 -5.0297 1.9914 17 6 3.5266 -5.3177 3.2254 18 8 3.4223 -4.4998 4.1190 19 6 4.1562 -6.6265 3.4922 20 6 4.6330 -6.9265 4.7707 21 6 5.2202 -8.1479 5.0158 22 6 5.3392 -9.0818 3.9925 23 7 5.9364 -10.3208 4.2449 24 6 6.1164 -11.3210 3.3436 25 6 6.7216 -12.3466 3.9856 26 6 6.9273 -11.9622 5.3155 27 7 6.4550 -10.7524 5.4727 28 6 4.8709 -8.7845 2.7174 29 6 4.2771 -7.5674 2.4666 30 1 -0.4849 0.8401 -0.0004 31 1 -0.4190 -1.8706 -1.0841 32 1 -0.7085 -2.3912 0.6031 33 1 0.0316 -4.1224 -1.8191 34 1 -1.2615 -4.3954 -0.6034 35 1 1.1375 -5.6566 -0.3243 36 1 0.3228 -4.9729 1.1189 37 1 1.6256 -3.5711 2.4290 38 1 3.1846 -2.9407 1.8456 39 1 3.1506 -5.6823 1.2786 40 1 4.5413 -6.2013 5.5658 41 1 5.5893 -8.3803 6.0038 42 1 5.8250 -11.3025 2.3038 43 1 6.9994 -13.2941 3.5481 44 1 7.3925 -12.5636 6.0825 45 1 4.9690 -9.5104 1.9239 46 1 3.9096 -7.3388 1.4772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027931534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 102.087442 kcal Electronic energy + Delta-G solvation = -27982.300098 eV Core-core repulsion = 24067.533259 eV Total energy + Delta-G solvation = -3914.766839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.90208 -40.16387 -38.56900 -37.54147 -34.41788 -33.86146 -32.51641 -31.71889 -30.51412 -30.09593 -29.43579 -28.39693 -25.22400 -24.52700 -23.68339 -23.28629 -21.61298 -20.92086 -20.45350 -20.08492 -19.62050 -18.79426 -17.77592 -16.64177 -16.16790 -15.68326 -15.62330 -15.35405 -14.98143 -14.86161 -14.68633 -14.30851 -14.06364 -13.96497 -13.87221 -13.41229 -13.29389 -13.16050 -12.79329 -12.72209 -12.11149 -11.92042 -11.78335 -11.61768 -11.34322 -11.12109 -10.96995 -10.79060 -10.68949 -10.28505 -10.15780 -10.01750 -9.88459 -9.79262 -9.67926 -9.59785 -9.47800 -8.77141 -8.61194 -8.41195 -6.87211 -5.78845 -3.15603 0.17484 0.92566 1.58922 1.92425 2.33335 2.85376 3.31351 3.40455 3.44594 3.45613 3.66235 3.99876 4.23773 4.42835 4.46454 4.47729 4.67379 4.81084 4.93458 5.06427 5.20339 5.23547 5.30333 5.36365 5.45544 5.46901 5.54832 5.59423 5.73434 5.76840 5.80959 5.97422 6.03388 6.11451 6.16082 6.20170 6.25907 6.42033 6.50984 6.57105 6.65431 6.71237 6.77177 7.01439 7.16201 7.48302 7.57627 7.70114 7.76409 8.22422 8.38258 9.14433 9.75317 10.42651 11.33112 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022564 B = 0.002004 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.618449 B =13966.542768 C =14669.884837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.151 3.849 14 H 0.037 0.963 15 C 0.108 3.892 16 N -0.716 5.716 17 C 0.550 3.450 18 O -0.536 6.536 19 C -0.135 4.135 20 C -0.036 4.036 21 C -0.128 4.128 22 C 0.178 3.822 23 N -0.326 5.326 24 C 0.053 3.947 25 C -0.260 4.260 26 C 0.055 3.945 27 N -0.287 5.287 28 C -0.149 4.149 29 C -0.059 4.059 30 H 0.255 0.745 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.394 0.606 40 H 0.147 0.853 41 H 0.143 0.857 42 H 0.180 0.820 43 H 0.155 0.845 44 H 0.190 0.810 45 H 0.136 0.864 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.053 -25.509 3.964 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.017 4.017 16 N -0.367 5.367 17 C 0.336 3.664 18 O -0.414 6.414 19 C -0.139 4.139 20 C -0.055 4.055 21 C -0.148 4.148 22 C 0.085 3.915 23 N -0.102 5.102 24 C -0.088 4.088 25 C -0.288 4.288 26 C -0.132 4.132 27 N -0.105 5.105 28 C -0.169 4.169 29 C -0.078 4.078 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.228 0.772 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.197 0.803 43 H 0.173 0.827 44 H 0.207 0.793 45 H 0.153 0.847 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.665 -23.604 5.360 26.063 hybrid contribution 0.679 -0.238 -0.861 1.122 sum 10.344 -23.842 4.498 26.376 Atomic orbital electron populations 1.69925 1.05019 1.25473 1.55691 1.24920 0.95697 0.97897 1.01334 0.86218 0.78595 0.83033 0.78037 1.21070 1.21550 1.20922 1.18929 0.90355 0.82151 1.44903 0.90662 1.44545 1.06121 1.00870 1.79692 1.21515 0.84702 0.90210 0.98902 1.22998 0.97531 0.99596 0.98574 1.22610 0.97160 0.96907 0.99781 1.21134 0.94491 0.88217 0.91879 0.94520 1.22314 0.97532 0.82379 0.99461 1.46074 1.60453 1.19458 1.10723 1.18139 0.78789 0.86341 0.83128 1.90805 1.56925 1.49244 1.44442 1.20202 1.03413 0.95353 0.94958 1.21224 0.92568 0.95426 0.96322 1.20859 1.01829 0.92766 0.99332 1.17724 0.95958 0.83054 0.94797 1.46027 1.45011 1.11422 1.07728 1.22831 1.00554 0.88403 0.97040 1.21651 1.10759 1.01697 0.94699 1.24130 0.98516 0.93056 0.97514 1.77458 1.17014 1.14253 1.01822 1.20680 1.02821 0.98744 0.94696 1.21141 0.95881 0.91863 0.98934 0.93519 0.90881 0.95563 0.92268 0.92311 0.92461 0.91775 0.91354 0.91305 0.77151 0.83543 0.83907 0.80287 0.82707 0.79278 0.84657 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.43 10.58 55.49 0.59 -25.84 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.36 9.76 -15.06 -0.15 -6.51 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.31 3.14 -162.32 -0.51 -14.82 16 10 C 0.17 4.01 5.44 -2.35 -0.01 4.00 16 11 C -0.15 -2.63 7.09 -24.58 -0.17 -2.81 16 12 C -0.13 -2.02 6.10 -24.90 -0.15 -2.17 16 13 C 0.15 2.89 3.21 -66.95 -0.21 2.67 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 15 C 0.11 2.04 5.07 -4.04 -0.02 2.01 16 16 N -0.72 -10.39 5.28 -61.30 -0.32 -10.71 16 17 C 0.55 8.56 7.77 -12.41 -0.10 8.46 16 18 O -0.54 -10.64 16.33 5.29 0.09 -10.56 16 19 C -0.14 -1.62 5.88 -104.95 -0.62 -2.24 16 20 C -0.04 -0.42 9.58 -39.22 -0.38 -0.79 16 21 C -0.13 -1.36 9.64 -39.47 -0.38 -1.74 16 22 C 0.18 1.77 6.69 -83.60 -0.56 1.21 16 23 N -0.33 -3.19 3.81 -10.55 -0.04 -3.23 16 24 C 0.05 0.38 10.81 -16.83 -0.18 0.19 16 25 C -0.26 -1.66 10.80 -39.99 -0.43 -2.09 16 26 C 0.06 0.41 12.02 -17.34 -0.21 0.21 16 27 N -0.29 -3.01 11.85 30.64 0.36 -2.65 16 28 C -0.15 -1.20 9.44 -39.46 -0.37 -1.57 16 29 C -0.06 -0.52 9.53 -39.22 -0.37 -0.90 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.07 1.91 6.92 -51.93 -0.36 1.55 16 32 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.02 7.81 -51.93 -0.41 0.62 16 37 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 38 H 0.07 1.48 7.91 -51.93 -0.41 1.07 16 39 H 0.39 4.35 6.36 -40.82 -0.26 4.09 16 40 H 0.15 1.71 7.64 -52.49 -0.40 1.31 16 41 H 0.14 1.46 7.68 -52.49 -0.40 1.06 16 42 H 0.18 0.65 7.04 -52.49 -0.37 0.28 16 43 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 44 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.14 0.68 6.72 -52.49 -0.35 0.33 16 46 H 0.14 0.89 6.39 -52.49 -0.34 0.56 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -34.22 381.61 -9.74 -43.96 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.22 Total: 3.31 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -4.41 Total: -2.17 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.08 Total: -57.25 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.22 -9.74 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027931534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.051 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds