Wall clock time and date at job start Sat Apr 11 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40569 * 119.82728 * 2 1 4 4 C 1.35893 * 119.72591 * 180.02562 * 3 2 1 5 5 C 1.41192 * 119.34922 * 0.27913 * 4 3 2 6 6 N 1.32232 * 132.04478 * 179.69630 * 5 4 3 7 7 C 1.34590 * 109.01945 * 180.02562 * 6 5 4 8 8 C 1.47585 * 125.91572 * 180.02562 * 7 6 5 9 9 O 1.21591 * 120.00049 * 172.35956 * 8 7 6 10 10 N 1.34784 * 120.00173 * 352.36214 * 8 7 6 11 11 C 1.47164 * 120.71104 * 183.03278 * 10 8 7 12 12 C 1.53883 * 108.02334 * 132.75378 * 11 10 8 13 13 H 1.08996 * 112.09946 * 181.91645 * 12 11 10 14 14 C 1.54544 * 107.83561 * 306.51248 * 12 11 10 15 15 C 1.54280 * 104.85083 * 89.07623 * 14 12 11 16 16 C 1.54550 * 104.84763 * 359.97438 * 15 14 12 17 17 H 1.08998 * 112.18114 * 146.41425 * 16 15 14 18 18 C 1.47162 * 120.70861 * 2.75856 * 10 8 7 19 19 N 1.48305 * 104.35443 * 24.70462 * 16 15 14 20 20 C 1.36943 * 128.07154 * 139.11812 * 19 16 15 21 21 H 1.08003 * 119.99828 * 195.04758 * 20 19 16 22 22 C 1.38803 * 120.00189 * 15.04940 * 20 19 16 23 23 N 1.31618 * 120.00342 * 9.66295 * 22 20 19 24 24 Si 1.86798 * 120.00132 * 189.66438 * 22 20 19 25 25 H 1.48501 * 109.47099 * 89.99897 * 24 22 20 26 26 H 1.48494 * 109.47752 * 210.00003 * 24 22 20 27 27 H 1.48499 * 109.47327 * 330.00158 * 24 22 20 28 28 C 1.36585 * 108.16007 * 359.40187 * 7 6 5 29 29 N 1.36189 * 107.09349 * 0.67414 * 28 7 6 30 30 C 1.34847 * 119.82500 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47579 * 89.99566 * 1 2 3 32 32 H 1.09000 * 109.47410 * 210.00312 * 1 2 3 33 33 H 1.09003 * 109.47068 * 329.99207 * 1 2 3 34 34 H 1.07997 * 120.13916 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.32304 * 180.02562 * 4 3 2 36 36 H 1.09001 * 109.75178 * 252.39182 * 11 10 8 37 37 H 1.09003 * 109.75016 * 13.07436 * 11 10 8 38 38 H 1.08994 * 110.36377 * 207.92209 * 14 12 11 39 39 H 1.08996 * 110.36372 * 330.23709 * 14 12 11 40 40 H 1.08998 * 110.36931 * 241.14937 * 15 14 12 41 41 H 1.09003 * 110.36398 * 118.83414 * 15 14 12 42 42 H 1.09000 * 109.74779 * 346.87796 * 18 10 8 43 43 H 1.09000 * 109.74670 * 107.60427 * 18 10 8 44 44 H 0.97000 * 120.00206 * 179.97438 * 23 22 20 45 45 H 1.07995 * 126.44949 * 179.97438 * 28 7 6 46 46 H 1.08004 * 119.68123 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2195 0.0000 4 6 3.5651 1.2171 -0.0005 5 6 4.2550 -0.0148 -0.0071 6 7 5.5444 -0.3077 -0.0143 7 6 5.6903 -1.6457 -0.0189 8 6 6.9724 -2.3767 -0.0268 9 8 6.9841 -3.5849 0.1095 10 7 8.1302 -1.7051 -0.1851 11 6 9.4118 -2.4243 -0.2619 12 6 10.2009 -1.8647 -1.4586 13 1 11.1529 -2.3769 -1.5976 14 6 9.2918 -1.9481 -2.7056 15 6 8.5164 -0.6143 -2.7195 16 6 9.0269 0.1535 -1.4793 17 1 9.0554 1.2305 -1.6449 18 6 8.1392 -0.2373 -0.2909 19 7 10.3751 -0.4105 -1.2268 20 6 11.5150 0.2561 -0.8639 21 1 12.4752 -0.2312 -0.9471 22 6 11.4362 1.5580 -0.3889 23 7 10.2640 2.0860 -0.1071 24 14 12.9940 2.5608 -0.1498 25 1 13.3039 3.2995 -1.4002 26 1 12.7951 3.5274 0.9598 27 1 14.1214 1.6527 0.1810 28 6 4.4465 -2.2096 -0.0009 29 7 3.5444 -1.1893 -0.0006 30 6 2.1777 -1.1699 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8899 0.5140 34 1 1.6657 2.1544 -0.0004 35 1 4.1121 2.1484 -0.0001 36 1 9.9770 -2.2690 0.6572 37 1 9.2286 -3.4891 -0.4060 38 1 9.8945 -2.0459 -3.6085 39 1 8.6017 -2.7870 -2.6165 40 1 7.4451 -0.7975 -2.6374 41 1 8.7380 -0.0562 -3.6293 42 1 7.1248 0.1263 -0.4548 43 1 8.5428 0.1954 0.6245 44 1 10.2090 2.9956 0.2252 45 1 4.2207 -3.2657 0.0002 46 1 1.6296 -2.1005 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029357871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:15 Heat of formation + Delta-G solvation = 110.047917 kcal Electronic energy + Delta-G solvation = -30301.133188 eV Core-core repulsion = 26386.711542 eV Total energy + Delta-G solvation = -3914.421647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.90139 -39.80760 -38.08040 -37.29916 -34.05699 -33.39164 -32.47345 -32.13040 -30.43475 -29.13183 -29.02891 -27.32553 -26.05739 -24.24456 -23.63580 -23.43288 -22.30787 -22.12313 -19.63269 -19.45717 -18.57002 -17.97888 -17.01669 -16.65322 -16.13820 -15.73126 -15.42131 -15.14590 -14.79379 -14.70139 -14.48076 -14.01547 -13.92543 -13.65821 -13.39027 -12.93244 -12.84444 -12.76494 -12.55334 -12.48925 -11.83539 -11.68196 -11.62859 -11.56336 -11.36113 -11.11378 -11.05332 -10.84882 -10.69090 -10.30940 -10.09374 -9.85921 -9.65931 -9.52906 -9.38716 -9.16746 -8.79886 -8.51408 -8.03088 -7.82036 -6.70047 -5.73666 -3.08205 0.51659 1.10721 2.21388 2.40237 3.27277 3.41311 3.47132 3.48348 3.65456 3.88304 4.04300 4.29210 4.43235 4.50258 4.56341 4.79458 5.02470 5.15219 5.17935 5.27392 5.33000 5.39191 5.42999 5.56809 5.64823 5.79662 5.84121 5.86798 5.91587 6.00202 6.09630 6.20160 6.25997 6.31859 6.42084 6.52720 6.58739 6.68866 6.78649 6.85620 6.91917 6.98074 7.06976 7.45788 7.49498 7.59082 7.76236 7.81003 8.24281 8.27479 8.77002 9.16319 9.78086 10.56611 11.38960 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.003424 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.619108 B = 8175.768656 C = 9367.941518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.107 4.107 3 C -0.107 4.107 4 C -0.064 4.064 5 C 0.215 3.785 6 N -0.443 5.443 7 C 0.025 3.975 8 C 0.584 3.416 9 O -0.566 6.566 10 N -0.567 5.567 11 C 0.100 3.900 12 C 0.134 3.866 13 H 0.078 0.922 14 C -0.123 4.123 15 C -0.135 4.135 16 C 0.170 3.830 17 H 0.116 0.884 18 C 0.071 3.929 19 N -0.587 5.587 20 C -0.224 4.224 21 H 0.075 0.925 22 C -0.004 4.004 23 N -0.910 5.910 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.028 4.028 29 N -0.362 5.362 30 C 0.047 3.953 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.129 0.871 43 H 0.075 0.925 44 H 0.253 0.747 45 H 0.193 0.807 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.501 -3.576 -1.252 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.110 4.110 3 C -0.130 4.130 4 C -0.084 4.084 5 C -0.029 4.029 6 N -0.164 5.164 7 C -0.108 4.108 8 C 0.370 3.630 9 O -0.447 6.447 10 N -0.295 5.295 11 C -0.025 4.025 12 C 0.026 3.974 13 H 0.096 0.904 14 C -0.163 4.163 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.134 0.866 18 C -0.052 4.052 19 N -0.308 5.308 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.201 4.201 23 N -0.556 5.556 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.163 4.163 29 N -0.033 5.033 30 C -0.074 4.074 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.145 0.855 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.210 0.790 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.653 -3.454 -1.064 19.983 hybrid contribution 0.219 0.001 0.260 0.340 sum -19.434 -3.453 -0.804 19.755 Atomic orbital electron populations 1.20674 0.89089 1.03409 1.02871 1.19469 0.97168 0.91763 1.02637 1.20951 0.93410 0.98039 1.00626 1.20418 0.93598 0.94990 0.99430 1.21323 0.87720 0.87383 1.06483 1.70930 1.11963 1.12864 1.20656 1.20798 0.93815 0.89772 1.06399 1.16981 0.82161 0.85792 0.78036 1.90717 1.86938 1.13406 1.53669 1.48114 1.04964 1.09565 1.66889 1.22440 0.83871 0.95656 1.00505 1.21953 0.95568 0.88007 0.91893 0.90446 1.22467 0.98138 0.97392 0.98260 1.22628 0.98012 0.96580 1.00181 1.21793 0.83579 0.99223 0.89183 0.86618 1.23479 1.04319 0.75720 1.01703 1.45216 1.06803 0.99627 1.79124 1.19001 0.84560 0.95776 1.35921 0.90713 1.24820 0.96809 0.98326 1.00149 1.69867 1.21793 1.15029 1.48946 0.86150 0.82445 0.80048 0.77257 1.21703 1.21813 1.20769 1.22515 0.87308 0.93831 1.12623 1.42721 1.06039 1.08736 1.45783 1.21397 0.80697 1.00422 1.04872 0.90662 0.91251 0.90703 0.84002 0.82608 0.91841 0.90825 0.92823 0.92876 0.93290 0.93095 0.85487 0.90663 0.93650 0.79013 0.82108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.43 10.00 36.01 0.36 -0.07 16 2 C -0.11 -0.81 5.85 -104.94 -0.61 -1.43 16 3 C -0.11 -0.87 9.73 -39.54 -0.38 -1.26 16 4 C -0.06 -0.72 10.11 -39.30 -0.40 -1.12 16 5 C 0.21 3.17 7.79 -156.04 -1.22 1.95 16 6 N -0.44 -7.98 7.65 -9.35 -0.07 -8.05 16 7 C 0.03 0.46 6.70 -83.44 -0.56 -0.10 16 8 C 0.58 12.03 7.70 -12.44 -0.10 11.94 16 9 O -0.57 -12.33 16.36 5.29 0.09 -12.24 16 10 N -0.57 -12.14 2.26 -173.04 -0.39 -12.53 16 11 C 0.10 2.10 5.89 -3.22 -0.02 2.08 16 12 C 0.13 2.87 4.32 -65.68 -0.28 2.58 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 14 C -0.12 -2.41 6.18 -25.25 -0.16 -2.57 16 15 C -0.13 -2.78 6.18 -25.25 -0.16 -2.93 16 16 C 0.17 4.01 3.11 -65.92 -0.21 3.81 16 17 H 0.12 3.08 6.38 -51.93 -0.33 2.74 16 18 C 0.07 1.61 5.53 -3.48 -0.02 1.59 16 19 N -0.59 -14.65 2.81 -152.90 -0.43 -15.08 16 20 C -0.22 -6.09 10.37 -15.06 -0.16 -6.25 16 21 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 22 C 0.00 -0.11 5.41 -17.43 -0.09 -0.20 16 23 N -0.91 -25.54 10.41 55.49 0.58 -24.96 16 24 Si 0.91 21.77 29.56 -169.99 -5.03 16.74 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.03 -0.41 11.47 -16.21 -0.19 -0.59 16 29 N -0.36 -4.66 2.93 -62.37 -0.18 -4.84 16 30 C 0.05 0.42 10.54 -16.59 -0.17 0.25 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 33 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.46 7.13 -51.93 -0.37 1.09 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 1.01 7.84 -51.93 -0.41 0.60 16 40 H 0.05 0.98 7.83 -51.93 -0.41 0.57 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.13 2.77 3.95 -71.18 -0.28 2.48 16 43 H 0.08 1.98 7.80 -51.93 -0.40 1.58 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.19 2.30 8.06 -52.49 -0.42 1.87 16 46 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -32.69 366.38 -10.66 -43.36 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -6.39 Total: 4.41 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -4.36 Total: 7.68 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.50 Total: -65.46 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.69 -10.66 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029357871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.405 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds