Wall clock time and date at job start Sat Apr 11 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40569 * 119.82728 * 2 1 4 4 C 1.35893 * 119.72591 * 180.02562 * 3 2 1 5 5 C 1.41192 * 119.34922 * 0.27913 * 4 3 2 6 6 N 1.32232 * 132.04478 * 179.69630 * 5 4 3 7 7 C 1.34590 * 109.01945 * 180.02562 * 6 5 4 8 8 C 1.47585 * 125.91572 * 180.02562 * 7 6 5 9 9 O 1.21591 * 120.00049 * 172.35956 * 8 7 6 10 10 N 1.34784 * 120.00173 * 352.36214 * 8 7 6 11 11 C 1.47164 * 120.71104 * 183.03278 * 10 8 7 12 12 C 1.53883 * 108.02334 * 132.75378 * 11 10 8 13 13 H 1.08996 * 112.09946 * 181.91645 * 12 11 10 14 14 C 1.54544 * 107.83561 * 306.51248 * 12 11 10 15 15 C 1.54280 * 104.85083 * 89.07623 * 14 12 11 16 16 C 1.54550 * 104.84763 * 359.97438 * 15 14 12 17 17 H 1.08998 * 112.18114 * 146.41425 * 16 15 14 18 18 C 1.47162 * 120.70861 * 2.75856 * 10 8 7 19 19 N 1.48305 * 104.35443 * 24.70462 * 16 15 14 20 20 C 1.36943 * 128.07154 * 139.11812 * 19 16 15 21 21 H 1.08003 * 119.99828 * 195.04758 * 20 19 16 22 22 C 1.38803 * 120.00189 * 15.04940 * 20 19 16 23 23 N 1.31618 * 120.00342 * 9.66295 * 22 20 19 24 24 Si 1.86798 * 120.00132 * 189.66438 * 22 20 19 25 25 H 1.48501 * 109.47099 * 89.99897 * 24 22 20 26 26 H 1.48494 * 109.47752 * 210.00003 * 24 22 20 27 27 H 1.48499 * 109.47327 * 330.00158 * 24 22 20 28 28 C 1.36585 * 108.16007 * 359.40187 * 7 6 5 29 29 N 1.36189 * 107.09349 * 0.67414 * 28 7 6 30 30 C 1.34847 * 119.82500 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47579 * 89.99566 * 1 2 3 32 32 H 1.09000 * 109.47410 * 210.00312 * 1 2 3 33 33 H 1.09003 * 109.47068 * 329.99207 * 1 2 3 34 34 H 1.07997 * 120.13916 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.32304 * 180.02562 * 4 3 2 36 36 H 1.09001 * 109.75178 * 252.39182 * 11 10 8 37 37 H 1.09003 * 109.75016 * 13.07436 * 11 10 8 38 38 H 1.08994 * 110.36377 * 207.92209 * 14 12 11 39 39 H 1.08996 * 110.36372 * 330.23709 * 14 12 11 40 40 H 1.08998 * 110.36931 * 241.14937 * 15 14 12 41 41 H 1.09003 * 110.36398 * 118.83414 * 15 14 12 42 42 H 1.09000 * 109.74779 * 346.87796 * 18 10 8 43 43 H 1.09000 * 109.74670 * 107.60427 * 18 10 8 44 44 H 0.97000 * 120.00206 * 179.97438 * 23 22 20 45 45 H 1.07995 * 126.44949 * 179.97438 * 28 7 6 46 46 H 1.08004 * 119.68123 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.2195 0.0000 4 6 3.5651 1.2171 -0.0005 5 6 4.2550 -0.0148 -0.0071 6 7 5.5444 -0.3077 -0.0143 7 6 5.6903 -1.6457 -0.0189 8 6 6.9724 -2.3767 -0.0268 9 8 6.9841 -3.5849 0.1095 10 7 8.1302 -1.7051 -0.1851 11 6 9.4118 -2.4243 -0.2619 12 6 10.2009 -1.8647 -1.4586 13 1 11.1529 -2.3769 -1.5976 14 6 9.2918 -1.9481 -2.7056 15 6 8.5164 -0.6143 -2.7195 16 6 9.0269 0.1535 -1.4793 17 1 9.0554 1.2305 -1.6449 18 6 8.1392 -0.2373 -0.2909 19 7 10.3751 -0.4105 -1.2268 20 6 11.5150 0.2561 -0.8639 21 1 12.4752 -0.2312 -0.9471 22 6 11.4362 1.5580 -0.3889 23 7 10.2640 2.0860 -0.1071 24 14 12.9940 2.5608 -0.1498 25 1 13.3039 3.2995 -1.4002 26 1 12.7951 3.5274 0.9598 27 1 14.1214 1.6527 0.1810 28 6 4.4465 -2.2096 -0.0009 29 7 3.5444 -1.1893 -0.0006 30 6 2.1777 -1.1699 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3633 0.8899 0.5140 34 1 1.6657 2.1544 -0.0004 35 1 4.1121 2.1484 -0.0001 36 1 9.9770 -2.2690 0.6572 37 1 9.2286 -3.4891 -0.4060 38 1 9.8945 -2.0459 -3.6085 39 1 8.6017 -2.7870 -2.6165 40 1 7.4451 -0.7975 -2.6374 41 1 8.7380 -0.0562 -3.6293 42 1 7.1248 0.1263 -0.4548 43 1 8.5428 0.1954 0.6245 44 1 10.2090 2.9956 0.2252 45 1 4.2207 -3.2657 0.0002 46 1 1.6296 -2.1005 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029357871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:14 Heat of formation + Delta-G solvation = 92.798786 kcal Electronic energy + Delta-G solvation = -30301.881167 eV Core-core repulsion = 26386.711542 eV Total energy + Delta-G solvation = -3915.169625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.93327 -41.46055 -39.44147 -38.49719 -35.47702 -34.78322 -34.14927 -33.10665 -32.14166 -31.04777 -30.08924 -28.37576 -27.46991 -25.81116 -25.32991 -24.61831 -23.53448 -23.08509 -21.34758 -21.03629 -20.24834 -19.24601 -18.23027 -17.96983 -17.33343 -17.12659 -16.94050 -16.67300 -16.37626 -15.86580 -15.59171 -15.43698 -15.15208 -14.98885 -14.66135 -14.45493 -14.32671 -14.19921 -13.56899 -13.33098 -13.28467 -13.23157 -13.09802 -12.92913 -12.75406 -12.56607 -12.43290 -12.37048 -12.00138 -11.92507 -11.89504 -11.59949 -11.46470 -11.27861 -11.12468 -10.89760 -10.31041 -9.85746 -9.59458 -8.91242 -8.66346 -7.81262 -5.17632 -0.33178 0.19823 0.99932 1.45412 1.49113 1.49945 1.58128 2.13000 2.29124 2.52111 2.55578 3.03062 3.35695 3.37284 3.54534 3.70132 3.85487 3.99650 4.06741 4.10159 4.14520 4.21236 4.25974 4.39298 4.47825 4.52116 4.65177 4.74128 4.78568 4.80179 4.87008 4.93080 4.99934 5.03896 5.07226 5.11742 5.17026 5.25840 5.26883 5.34605 5.35482 5.55741 5.57899 5.63423 5.78748 5.85922 6.02374 6.25949 6.50453 6.68561 7.09403 7.16644 7.74603 8.55340 9.29823 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.003424 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.619108 B = 8175.768656 C = 9367.941518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.098 4.098 3 C -0.075 4.075 4 C -0.103 4.103 5 C 0.209 3.791 6 N -0.494 5.494 7 C -0.018 4.018 8 C 0.586 3.414 9 O -0.582 6.582 10 N -0.575 5.575 11 C 0.104 3.896 12 C 0.131 3.869 13 H 0.090 0.910 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.167 3.833 17 H 0.081 0.919 18 C 0.092 3.908 19 N -0.606 5.606 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.055 4.055 23 N -0.933 5.933 24 Si 0.974 3.026 25 H -0.287 1.287 26 H -0.298 1.298 27 H -0.274 1.274 28 C -0.012 4.012 29 N -0.360 5.360 30 C 0.034 3.966 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.141 0.859 43 H 0.026 0.974 44 H 0.247 0.753 45 H 0.217 0.783 46 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.833 -4.134 -2.060 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.098 4.098 4 C -0.123 4.123 5 C -0.037 4.037 6 N -0.216 5.216 7 C -0.150 4.150 8 C 0.374 3.626 9 O -0.464 6.464 10 N -0.304 5.304 11 C -0.021 4.021 12 C 0.023 3.977 13 H 0.108 0.892 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.060 3.940 17 H 0.099 0.901 18 C -0.032 4.032 19 N -0.327 5.327 20 C -0.366 4.366 21 H 0.095 0.905 22 C -0.250 4.250 23 N -0.580 5.580 24 Si 0.803 3.197 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.199 1.199 28 C -0.149 4.149 29 N -0.030 5.030 30 C -0.086 4.086 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.197 0.803 35 H 0.175 0.825 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.158 0.842 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.234 0.766 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -23.007 -4.046 -1.882 23.436 hybrid contribution 0.956 0.215 0.565 1.131 sum -22.051 -3.831 -1.317 22.420 Atomic orbital electron populations 1.20796 0.85918 1.04959 1.04134 1.20028 0.99175 0.90841 1.00058 1.21492 0.92186 1.00102 0.96059 1.20624 0.95016 0.93914 1.02708 1.21661 0.87147 0.89070 1.05778 1.70559 1.14493 1.13114 1.23416 1.20501 0.93751 0.90351 1.10385 1.17319 0.82729 0.85756 0.76753 1.90678 1.87417 1.13997 1.54318 1.48075 1.05553 1.08865 1.67867 1.22337 0.83893 0.96363 0.99483 1.22150 0.96660 0.86175 0.92722 0.89190 1.22366 0.97868 0.96814 0.97906 1.22483 0.98291 0.96842 0.98644 1.21666 0.83659 0.97699 0.90980 0.90087 1.23125 1.04602 0.76561 0.98895 1.45407 1.06665 1.01352 1.79319 1.19311 0.85514 0.96251 1.35557 0.90478 1.25570 0.99480 0.99391 1.00553 1.70070 1.23427 1.14737 1.49754 0.85154 0.79442 0.78380 0.76712 1.21451 1.22440 1.19863 1.22714 0.86432 0.94908 1.10796 1.42831 1.07366 1.07545 1.45264 1.22195 0.78970 1.02813 1.04617 0.89319 0.89764 0.89247 0.80347 0.82530 0.94021 0.89398 0.90998 0.91898 0.92842 0.92512 0.84237 0.95552 0.94355 0.76630 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 10.00 71.24 0.71 0.41 16 2 C -0.10 -1.07 5.85 -20.07 -0.12 -1.18 16 3 C -0.07 -0.97 9.73 22.29 0.22 -0.75 16 4 C -0.10 -2.21 10.11 22.45 0.23 -1.99 16 5 C 0.21 6.16 7.79 134.20 1.05 7.20 16 6 N -0.49 -18.61 7.65 -183.48 -1.40 -20.01 16 7 C -0.02 -0.68 6.70 40.80 0.27 -0.41 16 8 C 0.59 24.86 7.70 86.71 0.67 25.52 16 9 O -0.58 -25.58 16.36 -4.00 -0.07 -25.65 16 10 N -0.57 -25.72 2.26 -819.62 -1.85 -27.58 16 11 C 0.10 4.51 5.89 86.55 0.51 5.02 16 12 C 0.13 5.63 4.32 45.47 0.20 5.83 16 13 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 14 C -0.11 -4.24 6.18 31.55 0.20 -4.04 16 15 C -0.12 -5.14 6.18 31.56 0.20 -4.95 16 16 C 0.17 8.30 3.11 45.30 0.14 8.44 16 17 H 0.08 4.58 6.38 -2.39 -0.02 4.57 16 18 C 0.09 4.45 5.53 86.39 0.48 4.93 16 19 N -0.61 -31.30 2.81 -637.67 -1.79 -33.09 16 20 C -0.24 -13.29 10.37 84.03 0.87 -12.42 16 21 H 0.08 4.17 7.85 -2.91 -0.02 4.14 16 22 C -0.06 -3.13 5.41 84.86 0.46 -2.67 16 23 N -0.93 -55.09 10.41 21.65 0.23 -54.86 16 24 Si 0.97 46.05 29.56 68.60 2.03 48.08 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 27 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 28 C -0.01 -0.35 11.47 83.63 0.96 0.61 16 29 N -0.36 -8.72 2.93 -351.24 -1.03 -9.74 16 30 C 0.03 0.49 10.54 83.16 0.88 1.36 16 31 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.08 0.08 8.07 -2.39 -0.02 0.06 16 33 H 0.09 0.09 8.09 -2.39 -0.02 0.07 16 34 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 3.53 7.13 -2.39 -0.02 3.52 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.06 2.30 7.84 -2.39 -0.02 2.28 16 40 H 0.05 2.17 7.83 -2.39 -0.02 2.15 16 41 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.14 6.53 3.95 -40.40 -0.16 6.37 16 43 H 0.03 1.50 7.80 -2.39 -0.02 1.48 16 44 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 45 H 0.22 4.78 8.06 -2.91 -0.02 4.76 16 46 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -75.98 366.38 4.87 -71.11 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.85 Total: 20.82 kcal Atomic # 6 Polarization: 23.01 SS G_CDS: 7.91 Total: 30.92 kcal Atomic # 7 Polarization: -139.43 SS G_CDS: -5.85 Total: -145.28 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.07 Total: -25.65 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.98 4.87 -71.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029357871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.909 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds