Wall clock time and date at job start Sat Apr 11 2020 06:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38897 * 119.73598 * 2 1 4 4 C 1.36680 * 120.89576 * 180.02562 * 3 2 1 5 5 C 1.39128 * 119.78249 * 359.97438 * 4 3 2 6 6 N 1.37048 * 134.72634 * 179.97438 * 5 4 3 7 7 H 0.97006 * 124.37261 * 0.02562 * 6 5 4 8 8 N 1.28388 * 111.25693 * 179.72893 * 6 5 4 9 9 C 1.31578 * 111.96248 * 0.47486 * 8 6 5 10 10 C 1.47382 * 126.81977 * 179.80768 * 9 8 6 11 11 O 1.21617 * 119.99785 * 174.03035 * 10 9 8 12 12 N 1.34778 * 120.00503 * 354.03361 * 10 9 8 13 13 C 1.47162 * 120.71457 * 183.09697 * 12 10 9 14 14 C 1.53885 * 108.03257 * 132.73201 * 13 12 10 15 15 H 1.09007 * 112.09543 * 181.91023 * 14 13 12 16 16 C 1.54552 * 108.37161 * 306.25325 * 14 13 12 17 17 C 1.54832 * 104.74085 * 89.17077 * 16 14 13 18 18 C 1.54547 * 104.74586 * 0.02562 * 17 16 14 19 19 H 1.08996 * 112.67959 * 146.80964 * 18 17 16 20 20 C 1.47163 * 120.70464 * 3.07173 * 12 10 9 21 21 N 1.48311 * 104.35634 * 24.82667 * 18 17 16 22 22 C 1.36931 * 128.07864 * 139.08595 * 21 18 17 23 23 H 1.08003 * 120.00024 * 336.79656 * 22 21 18 24 24 C 1.38811 * 120.00399 * 156.79840 * 22 21 18 25 25 N 1.31626 * 119.99992 * 354.32054 * 24 22 21 26 26 Si 1.86803 * 120.00199 * 174.31944 * 24 22 21 27 27 H 1.48504 * 109.46953 * 270.00057 * 26 24 22 28 28 H 1.48492 * 109.47245 * 29.99833 * 26 24 22 29 29 H 1.48495 * 109.47197 * 150.00486 * 26 24 22 30 30 C 1.40864 * 119.22605 * 0.02562 * 5 4 3 31 31 C 1.36719 * 119.74026 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47136 * 269.98148 * 1 2 3 33 33 H 1.08994 * 109.47216 * 29.98158 * 1 2 3 34 34 H 1.09003 * 109.46853 * 149.98456 * 1 2 3 35 35 H 1.08002 * 119.55139 * 0.03886 * 3 2 1 36 36 H 1.07996 * 120.10762 * 179.97438 * 4 3 2 37 37 H 1.09009 * 109.74439 * 13.10306 * 13 12 10 38 38 H 1.08993 * 109.79079 * 252.39698 * 13 12 10 39 39 H 1.08996 * 110.36021 * 208.14101 * 16 14 13 40 40 H 1.08994 * 110.36149 * 330.45471 * 16 14 13 41 41 H 1.09001 * 110.30602 * 241.24744 * 17 16 14 42 42 H 1.09002 * 110.61144 * 118.91145 * 17 16 14 43 43 H 1.08996 * 109.75382 * 346.90368 * 20 12 10 44 44 H 1.09006 * 109.74899 * 107.58337 * 20 12 10 45 45 H 0.96993 * 119.99687 * 180.02562 * 25 24 22 46 46 H 1.08003 * 120.24123 * 359.96227 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.2061 0.0000 4 6 3.5625 1.2337 -0.0005 5 6 4.2779 0.0405 -0.0005 6 7 5.6089 -0.2861 -0.0014 7 1 6.3316 0.3610 -0.0019 8 7 5.7759 -1.5590 0.0047 9 6 4.6300 -2.2057 0.0000 10 6 4.4406 -3.6673 0.0007 11 8 3.3231 -4.1356 0.1055 12 7 5.5057 -4.4850 -0.1148 13 6 5.3290 -5.9443 -0.1841 14 6 6.1849 -6.4731 -1.3485 15 1 6.0767 -7.5496 -1.4811 16 6 5.8091 -5.6873 -2.6253 17 6 6.7536 -4.4604 -2.6251 18 6 7.6096 -4.6232 -1.3487 19 1 8.6231 -4.2413 -1.4709 20 6 6.8704 -3.9374 -0.1749 21 7 7.5891 -6.0808 -1.0756 22 6 8.6234 -6.8770 -0.6618 23 1 9.6440 -6.5765 -0.8475 24 6 8.3602 -8.0706 -0.0037 25 7 7.1240 -8.3838 0.3220 26 14 9.7605 -9.2322 0.4197 27 1 9.9700 -10.1841 -0.7007 28 1 11.0026 -8.4497 0.6431 29 1 9.4221 -9.9866 1.6532 30 6 3.5771 -1.1815 -0.0005 31 6 2.1853 -1.1871 -0.0005 32 1 -0.3633 -0.0003 1.0276 33 1 -0.3633 0.8901 -0.5135 34 1 -0.3633 -0.8899 -0.5141 35 1 1.6444 2.1346 0.0006 36 1 4.0852 2.1788 -0.0009 37 1 4.2796 -6.1802 -0.3615 38 1 5.6561 -6.4004 0.7503 39 1 5.9782 -6.2996 -3.5110 40 1 4.7692 -5.3642 -2.5794 41 1 6.1751 -3.5377 -2.5791 42 1 7.3890 -4.4652 -3.5107 43 1 6.8285 -2.8618 -0.3461 44 1 7.3906 -4.1412 0.7611 45 1 6.9402 -9.2176 0.7822 46 1 1.6450 -2.1223 -0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029379119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:23 Heat of formation + Delta-G solvation = 101.255867 kcal Electronic energy + Delta-G solvation = -30302.478366 eV Core-core repulsion = 26387.675467 eV Total energy + Delta-G solvation = -3914.802899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.50361 -39.70924 -38.22632 -37.57338 -33.76275 -32.75910 -32.30444 -31.86445 -30.63452 -29.78977 -29.15401 -27.09050 -26.21924 -24.23458 -23.86650 -23.17855 -22.52996 -21.62428 -19.70411 -19.49680 -18.72975 -17.90644 -17.55290 -16.41968 -15.90487 -15.74269 -15.38242 -15.13820 -14.84064 -14.63253 -14.15564 -13.91207 -13.75577 -13.67039 -13.42728 -13.02239 -12.78789 -12.74009 -12.33763 -12.12261 -11.82521 -11.73844 -11.62417 -11.57853 -11.20300 -11.06184 -10.89749 -10.80367 -10.39777 -10.28847 -10.11823 -9.94594 -9.82572 -9.72102 -9.49726 -9.28246 -8.77344 -8.66941 -8.14558 -7.90915 -6.69635 -5.83477 -3.21478 0.78143 1.25544 1.99475 2.64084 3.36686 3.42648 3.44250 3.47133 3.56408 3.84231 4.33188 4.42500 4.48153 4.69718 4.74425 4.96461 5.19010 5.28007 5.30000 5.36516 5.45606 5.49635 5.52286 5.70294 5.80166 5.83788 5.86420 5.88696 6.02326 6.05410 6.17708 6.27097 6.42568 6.44282 6.48821 6.50978 6.60993 6.70335 6.73625 6.77961 6.86783 6.91672 6.99953 7.14644 7.36771 7.54490 7.73277 7.82908 8.15735 8.19356 8.71443 9.08359 9.69769 10.51392 11.30710 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.003037 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.627277 B = 9218.390436 C = 9636.044005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.121 4.121 5 C 0.062 3.938 6 N -0.425 5.425 7 H 0.444 0.556 8 N -0.204 5.204 9 C 0.025 3.975 10 C 0.587 3.413 11 O -0.550 6.550 12 N -0.571 5.571 13 C 0.111 3.889 14 C 0.172 3.828 15 H 0.107 0.893 16 C -0.136 4.136 17 C -0.121 4.121 18 C 0.134 3.866 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.584 5.584 22 C -0.229 4.229 23 H 0.073 0.927 24 C 0.002 3.998 25 N -0.909 5.909 26 Si 0.911 3.089 27 H -0.289 1.289 28 H -0.281 1.281 29 H -0.291 1.291 30 C -0.107 4.107 31 C -0.039 4.039 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.112 0.888 44 H 0.062 0.938 45 H 0.255 0.745 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 19.743 -2.025 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.116 4.116 3 C -0.104 4.104 4 C -0.142 4.142 5 C -0.052 4.052 6 N -0.142 5.142 7 H 0.288 0.712 8 N -0.033 5.033 9 C -0.146 4.146 10 C 0.372 3.628 11 O -0.428 6.428 12 N -0.301 5.301 13 C -0.011 4.011 14 C 0.065 3.935 15 H 0.125 0.875 16 C -0.175 4.175 17 C -0.160 4.160 18 C 0.026 3.974 19 H 0.094 0.906 20 C -0.057 4.057 21 N -0.305 5.305 22 C -0.358 4.358 23 H 0.091 0.909 24 C -0.196 4.196 25 N -0.554 5.554 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.206 1.206 29 H -0.217 1.217 30 C -0.114 4.114 31 C -0.059 4.059 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.306 19.026 -1.826 20.462 hybrid contribution 0.543 -0.050 0.380 0.665 sum -6.763 18.976 -1.446 20.197 Atomic orbital electron populations 1.20737 0.90749 1.02782 1.02316 1.19552 0.96421 0.92532 1.03095 1.20582 0.93054 0.97795 0.98921 1.19714 0.93781 0.94623 1.06082 1.19202 0.85117 0.96038 1.04795 1.43313 1.05797 1.04628 1.60509 0.71185 1.72971 1.25150 0.90881 1.14256 1.23112 0.87888 0.94772 1.08833 1.16816 0.84967 0.82636 0.78399 1.90739 1.23812 1.75525 1.52708 1.48104 1.05987 1.07958 1.68026 1.22570 0.99752 0.76001 1.02784 1.21698 0.84216 0.98875 0.88758 0.87497 1.22718 0.97841 0.97057 0.99923 1.22512 0.97842 0.97425 0.98196 1.22144 0.96242 0.87232 0.91790 0.90615 1.23453 0.81782 0.99883 1.00573 1.45142 1.06732 1.01069 1.77598 1.18942 0.86133 1.00747 1.29947 0.90940 1.24995 0.96577 0.99647 0.98415 1.69847 1.17498 1.24279 1.43803 0.86152 0.81308 0.80823 0.77596 1.21565 1.20648 1.21695 1.19401 0.94215 0.90651 1.07137 1.20287 0.91274 0.98656 0.95724 0.91288 0.91693 0.91333 0.85364 0.85571 0.91374 0.89236 0.92774 0.92879 0.93163 0.92788 0.87127 0.91919 0.93453 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.99 36.01 0.36 -0.50 16 2 C -0.11 -1.22 5.85 -104.92 -0.61 -1.83 16 3 C -0.08 -0.75 9.60 -39.90 -0.38 -1.13 16 4 C -0.12 -1.12 10.03 -39.81 -0.40 -1.52 16 5 C 0.06 0.75 7.38 -84.21 -0.62 0.13 16 6 N -0.42 -4.82 6.85 32.34 0.22 -4.59 16 7 H 0.44 3.20 8.96 -190.48 -1.71 1.49 16 8 N -0.20 -3.03 8.47 34.46 0.29 -2.74 16 9 C 0.03 0.44 7.07 -80.76 -0.57 -0.14 16 10 C 0.59 11.82 7.70 -12.54 -0.10 11.72 16 11 O -0.55 -12.14 15.91 5.26 0.08 -12.05 16 12 N -0.57 -11.76 2.28 -172.27 -0.39 -12.16 16 13 C 0.11 2.54 5.76 -3.22 -0.02 2.52 16 14 C 0.17 3.98 3.05 -65.64 -0.20 3.78 16 15 H 0.11 2.76 6.81 -51.93 -0.35 2.41 16 16 C -0.14 -2.72 6.23 -24.95 -0.16 -2.87 16 17 C -0.12 -2.23 6.24 -24.95 -0.16 -2.39 16 18 C 0.13 2.71 4.32 -65.20 -0.28 2.43 16 19 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 20 C 0.07 1.33 5.76 -2.76 -0.02 1.31 16 21 N -0.58 -14.11 2.77 -152.07 -0.42 -14.54 16 22 C -0.23 -6.06 10.34 -15.06 -0.16 -6.22 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 24 C 0.00 0.05 5.43 -17.43 -0.09 -0.05 16 25 N -0.91 -25.14 10.14 55.49 0.56 -24.57 16 26 Si 0.91 21.35 29.56 -169.99 -5.02 16.33 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 C -0.11 -1.62 6.34 -105.05 -0.67 -2.28 16 31 C -0.04 -0.54 9.50 -39.78 -0.38 -0.91 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.07 1.54 7.14 -51.92 -0.37 1.17 16 38 H 0.09 2.32 7.27 -51.93 -0.38 1.94 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 1.04 7.86 -51.93 -0.41 0.63 16 41 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.11 1.90 4.00 -91.89 -0.37 1.53 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.14 1.99 7.67 -52.48 -0.40 1.59 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -31.16 364.63 -11.37 -42.53 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.74 Total: 4.24 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -4.45 Total: 2.06 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.26 Total: -58.60 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.16 -11.37 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029379119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.786 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds