Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48494 * 109.47295 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.46756 * 239.99732 * 3 2 1 6 6 H 1.48501 * 109.46873 * 119.99928 * 3 2 1 7 7 C 1.38817 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99506 * 150.03143 * 7 2 1 9 9 N 1.36929 * 120.00059 * 330.03635 * 7 2 1 10 10 C 1.44580 * 118.64288 * 325.31304 * 9 7 2 11 11 C 1.54868 * 109.60245 * 270.70770 * 10 9 7 12 12 C 1.47092 * 110.32051 * 288.73369 * 11 10 9 13 13 C 1.52570 * 114.32633 * 62.79962 * 12 11 10 14 14 C 1.50878 * 109.35827 * 274.98606 * 13 12 11 15 15 H 1.08994 * 109.36788 * 331.69382 * 14 13 12 16 16 N 1.46497 * 109.36749 * 212.07765 * 14 13 12 17 17 C 1.34775 * 120.00320 * 155.00399 * 16 14 13 18 18 O 1.21553 * 120.00022 * 359.97438 * 17 16 14 19 19 C 1.47866 * 120.00172 * 180.02562 * 17 16 14 20 20 C 1.40632 * 120.25945 * 359.97438 * 19 17 16 21 21 N 1.30856 * 121.65745 * 179.97438 * 20 19 17 22 22 C 1.33595 * 121.58515 * 0.02562 * 21 20 19 23 23 C 1.40637 * 121.63598 * 180.02562 * 22 21 20 24 24 N 1.31148 * 120.04028 * 179.97438 * 23 22 21 25 25 C 1.32489 * 122.89364 * 359.97438 * 24 23 22 26 26 C 1.36312 * 121.71223 * 359.97438 * 25 24 23 27 27 C 1.40600 * 118.64532 * 0.03897 * 26 25 24 28 28 C 1.38995 * 120.26054 * 179.71880 * 19 17 16 29 29 C 1.47596 * 118.64723 * 145.04985 * 9 7 2 30 30 H 0.97003 * 119.99901 * 175.11384 * 1 2 3 31 31 H 1.09001 * 109.45147 * 30.74501 * 10 9 7 32 32 H 1.09006 * 109.45113 * 150.69621 * 10 9 7 33 33 H 1.08991 * 109.32910 * 48.99169 * 11 10 9 34 34 H 1.09002 * 109.33131 * 168.64536 * 11 10 9 35 35 H 1.09000 * 108.51405 * 184.05446 * 12 11 10 36 36 H 1.09006 * 108.51208 * 301.70154 * 12 11 10 37 37 H 1.08995 * 109.49157 * 34.95682 * 13 12 11 38 38 H 1.08997 * 109.48990 * 155.01938 * 13 12 11 39 39 H 0.97003 * 120.00214 * 335.00232 * 16 14 13 40 40 H 1.07996 * 119.17277 * 359.97438 * 20 19 17 41 41 H 1.08004 * 119.97865 * 0.02562 * 23 22 21 42 42 H 1.08002 * 119.14199 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.67607 * 180.02562 * 26 25 24 44 44 H 1.08006 * 121.10667 * 0.02562 * 28 19 17 45 45 H 1.09007 * 108.94966 * 258.57380 * 29 9 7 46 46 H 1.09000 * 108.94673 * 17.19669 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 2.9819 -1.2648 -0.4666 9 7 1.4629 -2.3085 0.5933 10 6 0.6550 -2.1312 1.7791 11 6 1.5572 -2.1926 3.0364 12 6 2.0263 -3.5684 3.2618 13 6 2.9003 -4.1257 2.1423 14 6 2.0203 -4.7027 1.0610 15 1 1.0840 -5.0453 1.5015 16 7 2.7026 -5.8369 0.4331 17 6 1.9849 -6.8047 -0.1708 18 8 0.7715 -6.7368 -0.1941 19 6 2.6735 -7.9498 -0.8041 20 6 4.0771 -8.0342 -0.7799 21 7 4.7145 -9.0353 -1.3312 22 6 4.0628 -10.0269 -1.9449 23 6 4.7468 -11.1036 -2.5372 24 7 4.0754 -12.0608 -3.1313 25 6 2.7527 -12.0720 -3.2070 26 6 1.9956 -11.0766 -2.6648 27 6 2.6458 -10.0150 -2.0112 28 6 1.9385 -8.9539 -1.4233 29 6 1.7172 -3.6322 -0.0080 30 1 -0.4850 -0.8370 -0.0716 31 1 0.1564 -1.1629 1.7372 32 1 -0.0928 -2.9227 1.8305 33 1 2.4164 -1.5369 2.8962 34 1 0.9884 -1.8612 3.9052 35 1 2.5967 -3.5918 4.1904 36 1 1.1571 -4.2164 3.3746 37 1 3.5115 -3.3254 1.7253 38 1 3.5469 -4.9075 2.5407 39 1 3.6709 -5.8914 0.4519 40 1 4.6432 -7.2531 -0.2943 41 1 5.8255 -11.1426 -2.5021 42 1 2.2617 -12.8910 -3.7115 43 1 0.9183 -11.1027 -2.7359 44 1 0.8595 -8.9175 -1.4540 45 1 0.8398 -3.9360 -0.5791 46 1 2.5686 -3.5561 -0.6844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034312699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 52.388974 kcal Electronic energy + Delta-G solvation = -28866.475766 eV Core-core repulsion = 24949.553840 eV Total energy + Delta-G solvation = -3916.921926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.66915 -40.00858 -38.38493 -37.69070 -34.97704 -34.11687 -33.59026 -32.26563 -30.93281 -30.83317 -29.88937 -26.30622 -25.49659 -24.95234 -24.47635 -23.12471 -22.88122 -21.33194 -20.28124 -19.36980 -18.88765 -18.27527 -17.78532 -17.24909 -16.63371 -15.98766 -15.52435 -15.44505 -15.10095 -14.80177 -14.66412 -14.33487 -14.02098 -13.77323 -13.63186 -13.62859 -13.47294 -13.10762 -12.98396 -12.81539 -12.55568 -12.32944 -11.81065 -11.29066 -11.23416 -10.79194 -10.69486 -10.51111 -10.49734 -10.24283 -10.17908 -10.05065 -10.03475 -9.87538 -9.75774 -9.75042 -9.35601 -9.02831 -8.91582 -8.30998 -6.80445 -6.06697 -3.34412 -0.36570 0.03965 1.31289 2.19568 2.95639 3.05463 3.47680 3.51045 3.60054 3.63921 3.69000 3.91550 4.00470 4.18799 4.22663 4.29550 4.55662 4.62743 4.76351 4.98359 5.07602 5.09658 5.22717 5.25888 5.30649 5.43774 5.48203 5.50512 5.59472 5.77788 5.81413 5.84954 5.96875 6.05818 6.24530 6.26861 6.39808 6.49280 6.60586 6.67857 6.73219 6.77964 6.84062 7.14184 7.17949 7.36248 7.44310 7.46779 8.05711 8.11524 8.58229 9.15519 9.83295 10.23255 11.12450 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020455 B = 0.002312 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.557251 B =12106.457808 C =12374.221019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.018 4.018 3 Si 1.059 2.941 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.359 4.359 8 H 0.050 0.950 9 N -0.586 5.586 10 C 0.142 3.858 11 C -0.143 4.143 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.131 3.869 15 H 0.082 0.918 16 N -0.711 5.711 17 C 0.558 3.442 18 O -0.527 6.527 19 C -0.167 4.167 20 C 0.161 3.839 21 N -0.456 5.456 22 C 0.081 3.919 23 C 0.163 3.837 24 N -0.469 5.469 25 C 0.072 3.928 26 C -0.132 4.132 27 C -0.086 4.086 28 C 0.007 3.993 29 C 0.142 3.858 30 H 0.270 0.730 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.397 0.603 40 H 0.168 0.832 41 H 0.175 0.825 42 H 0.161 0.839 43 H 0.146 0.854 44 H 0.159 0.841 45 H 0.019 0.981 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 -20.913 -0.194 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.222 4.222 3 Si 0.889 3.111 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.488 4.488 8 H 0.068 0.932 9 N -0.308 5.308 10 C 0.015 3.985 11 C -0.183 4.183 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.026 3.974 15 H 0.100 0.900 16 N -0.362 5.362 17 C 0.343 3.657 18 O -0.404 6.404 19 C -0.174 4.174 20 C -0.013 4.013 21 N -0.165 5.165 22 C -0.043 4.043 23 C -0.010 4.010 24 N -0.178 5.178 25 C -0.071 4.071 26 C -0.153 4.153 27 C -0.093 4.093 28 C -0.020 4.020 29 C 0.015 3.985 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.232 0.768 40 H 0.185 0.815 41 H 0.192 0.808 42 H 0.178 0.822 43 H 0.164 0.836 44 H 0.177 0.823 45 H 0.037 0.963 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.577 -20.104 -0.618 21.494 hybrid contribution -0.677 -0.951 0.257 1.195 sum 6.901 -21.055 -0.360 22.160 Atomic orbital electron populations 1.70774 1.06949 1.30268 1.45697 1.25840 0.96225 1.01664 0.98447 0.83611 0.75031 0.76209 0.76265 1.21150 1.21988 1.21947 1.19843 1.00362 0.89859 1.38714 0.93249 1.43563 1.59952 1.01075 1.26255 1.20949 0.91804 1.01265 0.84516 1.21374 1.01601 0.95759 0.99541 1.20259 0.98486 0.98126 0.96760 1.21265 0.98251 1.00229 0.95511 1.21638 0.95950 0.85380 0.94404 0.89960 1.46142 1.10101 1.23094 1.56894 1.17930 0.87106 0.81894 0.78748 1.90819 1.13215 1.77754 1.58616 1.21222 0.95357 0.97700 1.03098 1.23188 0.90469 0.94867 0.92816 1.67891 1.39171 1.01121 1.08292 1.20063 0.90492 0.95745 0.97986 1.23159 1.00755 0.86693 0.90438 1.67462 1.10000 1.25616 1.14695 1.22319 0.89176 0.98134 0.97436 1.22021 1.01849 0.93709 0.97673 1.18962 0.94331 0.96480 0.99539 1.21965 1.01486 0.89380 0.89193 1.21581 0.98585 0.85591 0.92701 0.91941 0.90260 0.95781 0.91685 0.93451 0.93504 0.93374 0.89923 0.92728 0.76822 0.81545 0.80799 0.82175 0.83626 0.82307 0.96332 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 12.18 55.49 0.68 -25.68 16 2 C -0.02 -0.50 4.68 -17.43 -0.08 -0.58 16 3 Si 1.06 24.62 30.01 -169.99 -5.10 19.52 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.36 -9.60 9.17 -15.06 -0.14 -9.74 16 8 H 0.05 1.34 7.97 -52.49 -0.42 0.93 16 9 N -0.59 -14.01 2.01 -171.87 -0.35 -14.36 16 10 C 0.14 3.21 4.89 -4.08 -0.02 3.19 16 11 C -0.14 -2.70 5.74 -28.58 -0.16 -2.87 16 12 C -0.10 -1.55 5.16 -29.79 -0.15 -1.71 16 13 C -0.11 -1.73 5.07 -28.02 -0.14 -1.87 16 14 C 0.13 2.15 2.27 -68.32 -0.15 2.00 16 15 H 0.08 1.50 6.74 -51.93 -0.35 1.15 16 16 N -0.71 -9.26 4.93 -55.12 -0.27 -9.53 16 17 C 0.56 7.85 7.74 -12.32 -0.10 7.75 16 18 O -0.53 -9.45 16.05 5.32 0.09 -9.36 16 19 C -0.17 -1.88 5.89 -104.77 -0.62 -2.50 16 20 C 0.16 1.57 10.68 -17.06 -0.18 1.39 16 21 N -0.46 -4.83 10.33 -10.65 -0.11 -4.94 16 22 C 0.08 0.84 6.62 -84.81 -0.56 0.28 16 23 C 0.16 1.49 11.25 -16.94 -0.19 1.30 16 24 N -0.47 -4.43 10.28 -13.11 -0.13 -4.56 16 25 C 0.07 0.55 11.08 -17.96 -0.20 0.35 16 26 C -0.13 -1.02 9.88 -39.38 -0.39 -1.41 16 27 C -0.09 -0.85 5.75 -106.80 -0.61 -1.47 16 28 C 0.01 0.07 9.51 -38.48 -0.37 -0.30 16 29 C 0.14 2.97 5.86 -2.76 -0.02 2.95 16 30 H 0.27 8.08 7.39 -40.82 -0.30 7.77 16 31 H 0.08 2.06 5.28 -51.93 -0.27 1.79 16 32 H 0.02 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 37 H 0.08 1.42 7.49 -51.93 -0.39 1.03 16 38 H 0.05 0.66 7.94 -51.93 -0.41 0.25 16 39 H 0.40 3.84 6.57 -40.82 -0.27 3.57 16 40 H 0.17 1.14 6.37 -52.49 -0.33 0.81 16 41 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 42 H 0.16 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 44 H 0.16 1.55 7.71 -52.48 -0.40 1.14 16 45 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 46 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -32.82 371.80 -9.80 -42.63 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.12 Total: 3.91 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -4.08 Total: -3.22 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.19 Total: -59.07 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.82 -9.80 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034312699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.015 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds