Wall clock time and date at job start Sat Apr 11 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99836 * 2 1 4 4 H 1.48499 * 109.46859 * 270.00177 * 3 2 1 5 5 H 1.48495 * 109.47209 * 30.00116 * 3 2 1 6 6 H 1.48496 * 109.47108 * 150.00204 * 3 2 1 7 7 C 1.38817 * 120.00446 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00245 * 158.60629 * 7 2 1 9 9 N 1.36934 * 119.99614 * 338.61175 * 7 2 1 10 10 C 1.43432 * 120.53851 * 156.25213 * 9 7 2 11 11 C 1.54900 * 116.08059 * 271.58824 * 10 9 7 12 12 C 1.54839 * 110.14018 * 318.63958 * 11 10 9 13 13 C 1.50299 * 110.69488 * 321.12892 * 12 11 10 14 14 C 1.52525 * 105.33029 * 97.84029 * 13 12 11 15 15 H 1.08996 * 108.52046 * 31.56887 * 14 13 12 16 16 N 1.46496 * 108.52393 * 149.24580 * 14 13 12 17 17 C 1.34780 * 120.00206 * 207.29093 * 16 14 13 18 18 O 1.21556 * 119.99444 * 359.97438 * 17 16 14 19 19 C 1.47857 * 120.00219 * 180.27582 * 17 16 14 20 20 C 1.40633 * 120.26279 * 359.71642 * 19 17 16 21 21 N 1.30851 * 121.66174 * 180.02562 * 20 19 17 22 22 C 1.33596 * 121.58296 * 0.02562 * 21 20 19 23 23 C 1.40637 * 121.62970 * 180.02562 * 22 21 20 24 24 N 1.31155 * 120.04128 * 179.97438 * 23 22 21 25 25 C 1.32494 * 122.88546 * 0.02562 * 24 23 22 26 26 C 1.36312 * 121.71405 * 359.97438 * 25 24 23 27 27 C 1.40595 * 118.65115 * 359.97438 * 26 25 24 28 28 C 1.38989 * 120.26234 * 179.45000 * 19 17 16 29 29 C 1.46243 * 114.16058 * 270.41010 * 14 13 12 30 30 H 0.96997 * 120.00334 * 359.97438 * 1 2 3 31 31 H 1.08999 * 108.15932 * 33.31212 * 10 9 7 32 32 H 1.09000 * 108.16041 * 149.87003 * 10 9 7 33 33 H 1.08999 * 109.35727 * 78.84754 * 11 10 9 34 34 H 1.08999 * 109.35468 * 198.56578 * 11 10 9 35 35 H 1.08997 * 109.20972 * 81.47965 * 12 11 10 36 36 H 1.09004 * 109.20515 * 200.83049 * 12 11 10 37 37 H 1.09007 * 110.38678 * 338.84444 * 13 12 11 38 38 H 1.08999 * 110.20170 * 216.73875 * 13 12 11 39 39 H 0.96997 * 120.00167 * 27.28466 * 16 14 13 40 40 H 1.08002 * 119.16909 * 0.02916 * 20 19 17 41 41 H 1.07999 * 119.98457 * 359.97438 * 23 22 21 42 42 H 1.08004 * 119.14115 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.67410 * 180.02562 * 26 25 24 44 44 H 1.08006 * 121.10921 * 359.97438 * 28 19 17 45 45 H 1.09001 * 109.84537 * 177.99188 * 29 14 13 46 46 H 1.09007 * 109.84120 * 298.97210 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0345 -1.2342 -0.3417 9 7 1.3964 -2.3474 0.4314 10 6 1.8581 -3.6322 -0.0083 11 6 1.2343 -4.1671 -1.3214 12 6 -0.2853 -3.8714 -1.3489 13 6 -0.8890 -4.0658 0.0137 14 6 -0.9649 -2.6700 0.6240 15 1 -1.1219 -1.9493 -0.1785 16 7 -2.1181 -2.6185 1.5260 17 6 -2.7395 -1.4454 1.7591 18 8 -2.3428 -0.4302 1.2211 19 6 -3.8997 -1.3924 2.6742 20 6 -4.3631 -2.5636 3.2997 21 7 -5.3873 -2.5482 4.1139 22 6 -6.0441 -1.4183 4.3908 23 6 -7.1448 -1.4006 5.2661 24 7 -7.7666 -0.2732 5.5162 25 6 -7.4072 0.8819 4.9759 26 6 -6.3544 0.9734 4.1149 27 6 -5.6380 -0.1944 3.7994 28 6 -4.5375 -0.1837 2.9273 29 6 0.2286 -2.2785 1.3730 30 1 -0.4850 0.8400 0.0004 31 1 2.9383 -3.5771 -0.1431 32 1 1.6564 -4.3546 0.7825 33 1 1.7124 -3.6819 -2.1724 34 1 1.3922 -5.2438 -1.3839 35 1 -0.4446 -2.8418 -1.6695 36 1 -0.7691 -4.5457 -2.0556 37 1 -0.2538 -4.7096 0.6221 38 1 -1.8876 -4.4937 -0.0746 39 1 -2.4345 -3.4286 1.9554 40 1 -3.8608 -3.4993 3.1032 41 1 -7.4782 -2.3158 5.7325 42 1 -7.9628 1.7742 5.2241 43 1 -6.0757 1.9240 3.6844 44 1 -4.2008 0.7325 2.4649 45 1 0.1138 -1.2610 1.7465 46 1 0.3839 -2.9641 2.2061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034312702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:48 Heat of formation + Delta-G solvation = 71.644646 kcal Electronic energy + Delta-G solvation = -29662.692288 eV Core-core repulsion = 25746.605351 eV Total energy + Delta-G solvation = -3916.086937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39729 -39.57052 -38.18622 -37.24434 -34.26889 -33.79401 -33.18067 -31.95127 -30.72720 -30.59483 -29.63416 -26.22330 -25.41717 -24.67866 -24.20448 -22.94641 -22.65565 -20.94702 -20.00581 -19.00798 -18.49912 -17.94099 -17.51962 -16.65429 -16.25539 -15.50990 -15.15617 -15.12686 -14.88059 -14.45494 -14.33624 -14.03087 -13.94295 -13.61901 -13.35131 -13.27160 -13.16175 -12.77306 -12.65892 -12.39135 -12.26028 -11.88194 -11.34995 -11.27470 -10.99055 -10.74888 -10.66129 -10.29585 -10.17323 -10.15708 -9.87894 -9.85606 -9.76751 -9.55013 -9.47784 -9.39018 -9.12433 -8.70085 -8.52407 -8.20302 -6.65439 -5.64252 -3.07031 -0.09777 0.30518 1.57072 2.52037 3.43783 3.51387 3.52627 3.54026 3.56798 3.84341 3.97685 4.14069 4.22762 4.45117 4.54942 4.58492 4.62395 4.94206 5.04417 5.27318 5.33950 5.42920 5.46034 5.53567 5.55183 5.63049 5.70942 5.81555 5.92008 6.08559 6.10866 6.18298 6.28667 6.29632 6.37780 6.51869 6.56908 6.83790 6.92513 6.98085 7.03309 7.16721 7.17407 7.41279 7.52326 7.60190 7.66561 7.90745 8.16748 8.51216 8.82890 9.27983 9.93997 10.46157 11.40881 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014686 B = 0.003172 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.167911 B = 8824.423360 C =10331.382240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.011 3.989 3 Si 0.888 3.112 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.276 4.276 8 H 0.065 0.935 9 N -0.580 5.580 10 C 0.157 3.843 11 C -0.145 4.145 12 C -0.105 4.105 13 C -0.123 4.123 14 C 0.129 3.871 15 H 0.132 0.868 16 N -0.725 5.725 17 C 0.536 3.464 18 O -0.472 6.472 19 C -0.158 4.158 20 C 0.158 3.842 21 N -0.462 5.462 22 C 0.076 3.924 23 C 0.161 3.839 24 N -0.473 5.473 25 C 0.068 3.932 26 C -0.132 4.132 27 C -0.084 4.084 28 C -0.002 4.002 29 C 0.157 3.843 30 H 0.261 0.739 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.381 0.619 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.159 0.841 45 H 0.094 0.906 46 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 -5.282 6.907 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.190 4.190 3 Si 0.718 3.282 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.405 4.405 8 H 0.083 0.917 9 N -0.301 5.301 10 C 0.028 3.972 11 C -0.186 4.186 12 C -0.143 4.143 13 C -0.161 4.161 14 C 0.027 3.973 15 H 0.149 0.851 16 N -0.377 5.377 17 C 0.319 3.681 18 O -0.343 6.343 19 C -0.165 4.165 20 C -0.016 4.016 21 N -0.170 5.170 22 C -0.047 4.047 23 C -0.013 4.013 24 N -0.181 5.181 25 C -0.075 4.075 26 C -0.153 4.153 27 C -0.091 4.091 28 C -0.029 4.029 29 C 0.032 3.968 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.214 0.786 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.176 0.824 43 H 0.162 0.838 44 H 0.176 0.824 45 H 0.112 0.888 46 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -13.327 -4.901 7.507 16.062 hybrid contribution 1.261 1.211 -0.915 1.973 sum -12.067 -3.690 6.592 14.236 Atomic orbital electron populations 1.69830 1.03964 1.26274 1.50186 1.24968 0.95281 0.97898 1.00866 0.86555 0.79368 0.84864 0.77436 1.21721 1.21792 1.20855 1.18995 0.94421 0.85513 1.41565 0.91690 1.44018 1.35424 1.01063 1.49586 1.20421 0.96401 0.87861 0.92547 1.22908 0.95863 0.98141 1.01664 1.21315 0.95567 1.02122 0.95313 1.21398 0.99492 0.97185 0.98054 1.21287 0.84578 0.96932 0.94551 0.85104 1.46418 1.33416 1.08675 1.49215 1.17934 0.82534 0.85254 0.82415 1.91022 1.63131 1.32553 1.47638 1.21579 0.99279 0.94882 1.00745 1.23210 0.91028 0.97656 0.89677 1.67864 1.07330 1.27489 1.14349 1.20017 0.97435 0.89111 0.98157 1.23098 0.89201 0.96661 0.92291 1.67441 1.29213 0.98696 1.22798 1.22261 0.95242 0.95803 0.94159 1.22018 0.96185 0.98263 0.98793 1.18972 0.96938 0.94925 0.98275 1.21970 0.90365 0.98979 0.91570 1.20415 0.85420 1.01157 0.89762 0.92768 0.94977 0.95587 0.92999 0.93925 0.90640 0.94404 0.91874 0.92757 0.78563 0.81710 0.81044 0.82401 0.83778 0.82388 0.88778 0.97686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.54 7.78 55.49 0.43 -23.11 16 2 C 0.01 0.31 4.85 -17.43 -0.08 0.22 16 3 Si 0.89 21.64 29.60 -169.99 -5.03 16.61 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.28 -7.33 9.61 -15.06 -0.14 -7.48 16 8 H 0.07 1.74 7.90 -52.49 -0.41 1.33 16 9 N -0.58 -13.73 2.60 -175.08 -0.45 -14.19 16 10 C 0.16 3.15 5.17 -4.66 -0.02 3.13 16 11 C -0.14 -2.60 6.41 -24.76 -0.16 -2.76 16 12 C -0.11 -1.88 5.66 -27.11 -0.15 -2.04 16 13 C -0.12 -2.02 5.24 -28.32 -0.15 -2.17 16 14 C 0.13 2.51 1.82 -71.39 -0.13 2.38 16 15 H 0.13 3.15 4.60 -51.93 -0.24 2.91 16 16 N -0.72 -11.55 4.86 -58.16 -0.28 -11.83 16 17 C 0.54 9.33 7.62 -12.32 -0.09 9.23 16 18 O -0.47 -10.38 13.66 5.32 0.07 -10.31 16 19 C -0.16 -2.21 5.89 -104.78 -0.62 -2.83 16 20 C 0.16 1.88 10.68 -17.07 -0.18 1.70 16 21 N -0.46 -5.74 10.33 -10.65 -0.11 -5.85 16 22 C 0.08 0.94 6.62 -84.81 -0.56 0.38 16 23 C 0.16 1.75 11.25 -16.94 -0.19 1.56 16 24 N -0.47 -5.25 10.28 -13.11 -0.13 -5.38 16 25 C 0.07 0.65 11.08 -17.96 -0.20 0.45 16 26 C -0.13 -1.31 9.88 -39.39 -0.39 -1.70 16 27 C -0.08 -1.03 5.75 -106.80 -0.61 -1.64 16 28 C 0.00 -0.03 9.51 -38.48 -0.37 -0.39 16 29 C 0.16 3.50 4.63 -5.20 -0.02 3.47 16 30 H 0.26 7.33 8.06 -40.82 -0.33 7.00 16 31 H 0.03 0.65 7.99 -51.93 -0.41 0.24 16 32 H 0.03 0.48 6.88 -51.93 -0.36 0.12 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 1.64 6.82 -51.93 -0.35 1.28 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 1.00 6.28 -51.93 -0.33 0.67 16 38 H 0.05 0.77 8.03 -51.93 -0.42 0.35 16 39 H 0.38 4.60 6.61 -40.82 -0.27 4.33 16 40 H 0.17 1.47 6.37 -52.49 -0.33 1.14 16 41 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.16 2.08 7.71 -52.48 -0.40 1.67 16 45 H 0.09 2.45 5.79 -51.93 -0.30 2.15 16 46 H 0.01 0.11 8.13 -51.92 -0.42 -0.32 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -30.92 361.84 -10.05 -40.97 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.92 Total: 6.12 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -4.08 Total: 1.52 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.55 Total: -60.36 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.31 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.92 -10.05 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034312702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.615 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds