Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00472 * 2 1 4 4 H 1.48500 * 109.46995 * 90.00182 * 3 2 1 5 5 H 1.48504 * 109.46990 * 330.00834 * 3 2 1 6 6 H 1.48492 * 109.47233 * 210.00385 * 3 2 1 7 7 C 1.38813 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99981 * 143.08014 * 7 2 1 9 9 N 1.36936 * 119.99764 * 323.08183 * 7 2 1 10 10 C 1.44578 * 118.64339 * 332.39568 * 9 7 2 11 11 C 1.54865 * 109.60065 * 270.70521 * 10 9 7 12 12 C 1.47101 * 110.32396 * 288.73705 * 11 10 9 13 13 C 1.52566 * 114.32786 * 62.79668 * 12 11 10 14 14 C 1.50879 * 109.35971 * 274.99458 * 13 12 11 15 15 H 1.09002 * 109.36481 * 331.69013 * 14 13 12 16 16 N 1.46506 * 109.36493 * 212.07949 * 14 13 12 17 17 C 1.34767 * 120.00099 * 154.99770 * 16 14 13 18 18 O 1.21523 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.48007 * 119.99944 * 179.97438 * 17 16 14 20 20 C 1.38890 * 121.16874 * 353.60618 * 19 17 16 21 21 C 1.39349 * 119.67298 * 179.97438 * 20 19 17 22 22 N 1.31108 * 121.90218 * 359.97438 * 21 20 19 23 23 C 1.33282 * 121.61524 * 0.02562 * 22 21 20 24 24 C 1.40836 * 121.90874 * 179.97438 * 23 22 21 25 25 C 1.36165 * 118.77273 * 180.02562 * 24 23 22 26 26 N 1.32540 * 121.95297 * 0.02562 * 25 24 23 27 27 C 1.31346 * 122.60928 * 359.97438 * 26 25 24 28 28 C 1.40085 * 119.87175 * 359.74085 * 27 26 25 29 29 C 1.47602 * 118.64275 * 152.12880 * 9 7 2 30 30 H 0.96997 * 120.00507 * 173.11144 * 1 2 3 31 31 H 1.08996 * 109.45031 * 30.74376 * 10 9 7 32 32 H 1.09003 * 109.44706 * 150.69293 * 10 9 7 33 33 H 1.09000 * 109.32397 * 48.99435 * 11 10 9 34 34 H 1.08994 * 109.32828 * 168.64585 * 11 10 9 35 35 H 1.08994 * 108.50961 * 184.05755 * 12 11 10 36 36 H 1.09003 * 108.50695 * 301.69963 * 12 11 10 37 37 H 1.09006 * 109.48922 * 34.95747 * 13 12 11 38 38 H 1.08997 * 109.49217 * 155.02441 * 13 12 11 39 39 H 0.97008 * 119.99461 * 334.99318 * 16 14 13 40 40 H 1.08003 * 120.16787 * 359.95546 * 20 19 17 41 41 H 1.08000 * 119.04930 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.61516 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.02503 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.06289 * 179.97438 * 27 26 25 45 45 H 1.08998 * 108.94672 * 258.57299 * 29 9 7 46 46 H 1.08998 * 108.94913 * 17.20468 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 1.4001 5 1 1.4478 2.6527 -0.6999 6 1 3.5478 1.4400 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 2.9278 -1.2958 -0.5624 9 7 1.5314 -2.2695 0.7113 10 6 0.7188 -2.0148 1.8797 11 6 1.6276 -1.8896 3.1274 12 6 2.1781 -3.2040 3.4924 13 6 3.0793 -3.8251 2.4295 14 6 2.2309 -4.5639 1.4240 15 1 1.3181 -4.9119 1.9075 16 7 2.9767 -5.7166 0.9128 17 6 2.3152 -6.7833 0.4218 18 8 1.1002 -6.7887 0.4027 19 6 3.0687 -7.9476 -0.0951 20 6 4.4526 -7.9156 -0.2082 21 6 5.1306 -9.0300 -0.6984 22 7 4.4999 -10.1208 -1.0606 23 6 3.1733 -10.2207 -0.9789 24 6 2.4895 -11.3892 -1.3667 25 6 1.1327 -11.4216 -1.2568 26 7 0.4413 -10.3882 -0.7976 27 6 1.0115 -9.2675 -0.4180 28 6 2.4044 -9.1354 -0.4863 29 6 1.8611 -3.6325 0.2507 30 1 -0.4851 -0.8339 -0.1007 31 1 0.1637 -1.0871 1.7406 32 1 0.0192 -2.8385 2.0219 33 1 2.4461 -1.2034 2.9100 34 1 1.0434 -1.5017 3.9618 35 1 2.7522 -3.0953 4.4125 36 1 1.3491 -3.8859 3.6816 37 1 3.6406 -3.0391 1.9241 38 1 3.7724 -4.5212 2.9018 39 1 3.9467 -5.7121 0.9276 40 1 5.0006 -7.0314 0.0822 41 1 6.2068 -8.9943 -0.7817 42 1 3.0312 -12.2435 -1.7450 43 1 0.6041 -12.3154 -1.5534 44 1 0.4079 -8.4509 -0.0504 45 1 1.0011 -4.0457 -0.2762 46 1 2.7041 -3.5790 -0.4382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034325898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 61.225082 kcal Electronic energy + Delta-G solvation = -29370.504169 eV Core-core repulsion = 25453.965406 eV Total energy + Delta-G solvation = -3916.538764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.68601 -39.88178 -38.31943 -37.93178 -35.05289 -33.97522 -33.53884 -31.86607 -31.34338 -30.75257 -29.78599 -26.28337 -25.62039 -24.56895 -24.48803 -23.82412 -22.66887 -21.12681 -20.21664 -19.40494 -18.81465 -18.26886 -17.55403 -17.27319 -16.34358 -16.15773 -15.58526 -15.30798 -15.06625 -14.98759 -14.61600 -14.39109 -14.23589 -13.83848 -13.67887 -13.51735 -13.38041 -13.08479 -13.04443 -12.57610 -12.37490 -12.31800 -11.81261 -11.28856 -10.97305 -10.79265 -10.71568 -10.62302 -10.51310 -10.24245 -10.08333 -10.05542 -10.01557 -9.90383 -9.70158 -9.54077 -9.45185 -9.13053 -8.82076 -8.29391 -6.88402 -6.12256 -3.26507 -0.39170 0.31607 1.24382 2.48466 2.82263 2.92535 3.49350 3.50718 3.67635 3.73876 3.77033 4.06598 4.15894 4.20539 4.34103 4.37579 4.58692 4.80599 4.94742 4.97183 5.10707 5.16379 5.20648 5.23961 5.38558 5.43804 5.47547 5.55578 5.62322 5.72977 5.77079 5.91822 6.01231 6.19497 6.21320 6.34631 6.37680 6.47364 6.55866 6.66492 6.70133 6.74647 6.78687 7.13306 7.31614 7.33736 7.37596 7.68510 7.97489 8.04570 8.53493 9.10468 9.82141 10.19734 11.07447 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002617 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.655079 B =10696.217090 C =10827.347240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C -0.016 4.016 3 Si 1.050 2.950 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.363 4.363 8 H 0.054 0.946 9 N -0.585 5.585 10 C 0.138 3.862 11 C -0.142 4.142 12 C -0.098 4.098 13 C -0.114 4.114 14 C 0.130 3.870 15 H 0.085 0.915 16 N -0.705 5.705 17 C 0.555 3.445 18 O -0.519 6.519 19 C -0.038 4.038 20 C -0.147 4.147 21 C 0.150 3.850 22 N -0.465 5.465 23 C 0.154 3.846 24 C -0.152 4.152 25 C 0.095 3.905 26 N -0.488 5.488 27 C 0.164 3.836 28 C -0.135 4.135 29 C 0.142 3.858 30 H 0.270 0.730 31 H 0.083 0.917 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.398 0.602 40 H 0.148 0.852 41 H 0.172 0.828 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.201 0.799 45 H 0.020 0.980 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.339 -18.788 2.592 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.220 4.220 3 Si 0.880 3.120 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.491 4.491 8 H 0.072 0.928 9 N -0.307 5.307 10 C 0.011 3.989 11 C -0.182 4.182 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.025 3.975 15 H 0.103 0.897 16 N -0.355 5.355 17 C 0.340 3.660 18 O -0.396 6.396 19 C -0.052 4.052 20 C -0.168 4.168 21 C -0.024 4.024 22 N -0.173 5.173 23 C 0.028 3.972 24 C -0.173 4.173 25 C -0.050 4.050 26 N -0.196 5.196 27 C -0.007 4.007 28 C -0.140 4.140 29 C 0.016 3.984 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.234 0.766 40 H 0.166 0.834 41 H 0.189 0.811 42 H 0.164 0.836 43 H 0.177 0.823 44 H 0.217 0.783 45 H 0.038 0.962 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.740 -18.153 2.309 20.279 hybrid contribution 1.428 -0.945 0.074 1.714 sum 10.168 -19.098 2.383 21.767 Atomic orbital electron populations 1.70731 1.07240 1.30275 1.44541 1.25625 0.95845 1.01355 0.99183 0.83748 0.75045 0.76552 0.76635 1.21963 1.21796 1.21857 1.19887 1.05454 0.92053 1.31755 0.92847 1.43626 1.60543 0.99962 1.26585 1.20991 0.92128 1.01013 0.84754 1.21353 1.01248 0.96226 0.99392 1.20262 0.98267 0.98193 0.96922 1.21267 0.98102 0.99553 0.96328 1.21700 0.95062 0.84533 0.96187 0.89726 1.46135 1.10302 1.16959 1.62122 1.18019 0.87307 0.82235 0.78417 1.90634 1.13135 1.80398 1.55478 1.20457 0.93943 0.93731 0.97065 1.22529 0.93634 1.00847 0.99809 1.23131 1.00991 0.87320 0.90949 1.67864 1.08487 1.25944 1.15019 1.18913 0.89525 0.93451 0.95343 1.21701 0.95326 0.97593 1.02663 1.22442 0.91123 0.97124 0.94294 1.67772 1.41024 1.00305 1.10494 1.24518 0.91052 0.95313 0.89864 1.19692 0.97046 0.94523 1.02745 1.21538 0.98309 0.85810 0.92774 0.91904 0.89891 0.95774 0.91669 0.93388 0.93469 0.93330 0.89839 0.92759 0.76634 0.83394 0.81135 0.83551 0.82255 0.78298 0.96192 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 12.01 55.49 0.67 -25.10 16 2 C -0.02 -0.44 4.56 -17.43 -0.08 -0.52 16 3 Si 1.05 24.37 30.04 -169.99 -5.11 19.27 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.36 -9.60 9.19 -15.06 -0.14 -9.74 16 8 H 0.05 1.44 7.95 -52.49 -0.42 1.02 16 9 N -0.58 -13.73 2.13 -171.88 -0.37 -14.09 16 10 C 0.14 3.10 5.00 -4.08 -0.02 3.08 16 11 C -0.14 -2.67 5.74 -28.58 -0.16 -2.83 16 12 C -0.10 -1.53 5.16 -29.79 -0.15 -1.68 16 13 C -0.11 -1.67 5.07 -28.02 -0.14 -1.81 16 14 C 0.13 2.05 2.27 -68.31 -0.15 1.90 16 15 H 0.08 1.48 6.75 -51.93 -0.35 1.13 16 16 N -0.70 -8.76 4.94 -55.08 -0.27 -9.03 16 17 C 0.55 7.61 7.71 -12.26 -0.09 7.52 16 18 O -0.52 -8.83 13.28 5.35 0.07 -8.75 16 19 C -0.04 -0.45 5.94 -104.37 -0.62 -1.07 16 20 C -0.15 -1.21 9.59 -38.93 -0.37 -1.58 16 21 C 0.15 1.20 11.14 -17.45 -0.19 1.00 16 22 N -0.46 -5.01 10.33 -10.95 -0.11 -5.12 16 23 C 0.15 1.83 6.63 -84.88 -0.56 1.27 16 24 C -0.15 -1.55 10.08 -39.35 -0.40 -1.95 16 25 C 0.09 0.98 11.06 -17.99 -0.20 0.78 16 26 N -0.49 -6.47 10.31 -13.24 -0.14 -6.61 16 27 C 0.16 2.27 10.52 -17.07 -0.18 2.09 16 28 C -0.14 -1.74 5.77 -106.55 -0.61 -2.35 16 29 C 0.14 2.89 5.86 -2.76 -0.02 2.87 16 30 H 0.27 8.00 7.74 -40.82 -0.32 7.69 16 31 H 0.08 2.14 5.10 -51.93 -0.26 1.88 16 32 H 0.02 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16 37 H 0.08 1.39 7.49 -51.93 -0.39 1.00 16 38 H 0.05 0.63 7.94 -51.93 -0.41 0.22 16 39 H 0.40 3.60 6.73 -40.82 -0.27 3.32 16 40 H 0.15 0.74 6.57 -52.48 -0.34 0.39 16 41 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.20 2.98 5.09 -52.49 -0.27 2.71 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.05 1.04 7.82 -51.93 -0.41 0.63 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -32.18 366.95 -9.83 -42.00 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.00 Total: 4.92 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.10 Total: -3.01 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.22 Total: -59.95 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.75 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.11 Total: 19.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.18 -9.83 -42.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034325898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.228 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds