Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00472 * 2 1 4 4 H 1.48500 * 109.46995 * 90.00182 * 3 2 1 5 5 H 1.48504 * 109.46990 * 330.00834 * 3 2 1 6 6 H 1.48492 * 109.47233 * 210.00385 * 3 2 1 7 7 C 1.38813 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99981 * 143.08014 * 7 2 1 9 9 N 1.36936 * 119.99764 * 323.08183 * 7 2 1 10 10 C 1.44578 * 118.64339 * 332.39568 * 9 7 2 11 11 C 1.54865 * 109.60065 * 270.70521 * 10 9 7 12 12 C 1.47101 * 110.32396 * 288.73705 * 11 10 9 13 13 C 1.52566 * 114.32786 * 62.79668 * 12 11 10 14 14 C 1.50879 * 109.35971 * 274.99458 * 13 12 11 15 15 H 1.09002 * 109.36481 * 331.69013 * 14 13 12 16 16 N 1.46506 * 109.36493 * 212.07949 * 14 13 12 17 17 C 1.34767 * 120.00099 * 154.99770 * 16 14 13 18 18 O 1.21523 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.48007 * 119.99944 * 179.97438 * 17 16 14 20 20 C 1.38890 * 121.16874 * 353.60618 * 19 17 16 21 21 C 1.39349 * 119.67298 * 179.97438 * 20 19 17 22 22 N 1.31108 * 121.90218 * 359.97438 * 21 20 19 23 23 C 1.33282 * 121.61524 * 0.02562 * 22 21 20 24 24 C 1.40836 * 121.90874 * 179.97438 * 23 22 21 25 25 C 1.36165 * 118.77273 * 180.02562 * 24 23 22 26 26 N 1.32540 * 121.95297 * 0.02562 * 25 24 23 27 27 C 1.31346 * 122.60928 * 359.97438 * 26 25 24 28 28 C 1.40085 * 119.87175 * 359.74085 * 27 26 25 29 29 C 1.47602 * 118.64275 * 152.12880 * 9 7 2 30 30 H 0.96997 * 120.00507 * 173.11144 * 1 2 3 31 31 H 1.08996 * 109.45031 * 30.74376 * 10 9 7 32 32 H 1.09003 * 109.44706 * 150.69293 * 10 9 7 33 33 H 1.09000 * 109.32397 * 48.99435 * 11 10 9 34 34 H 1.08994 * 109.32828 * 168.64585 * 11 10 9 35 35 H 1.08994 * 108.50961 * 184.05755 * 12 11 10 36 36 H 1.09003 * 108.50695 * 301.69963 * 12 11 10 37 37 H 1.09006 * 109.48922 * 34.95747 * 13 12 11 38 38 H 1.08997 * 109.49217 * 155.02441 * 13 12 11 39 39 H 0.97008 * 119.99461 * 334.99318 * 16 14 13 40 40 H 1.08003 * 120.16787 * 359.95546 * 20 19 17 41 41 H 1.08000 * 119.04930 * 180.02562 * 21 20 19 42 42 H 1.07998 * 120.61516 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.02503 * 179.97438 * 25 24 23 44 44 H 1.07993 * 120.06289 * 179.97438 * 27 26 25 45 45 H 1.08998 * 108.94672 * 258.57299 * 29 9 7 46 46 H 1.08998 * 108.94913 * 17.20468 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 1.4001 5 1 1.4478 2.6527 -0.6999 6 1 3.5478 1.4400 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 2.9278 -1.2958 -0.5624 9 7 1.5314 -2.2695 0.7113 10 6 0.7188 -2.0148 1.8797 11 6 1.6276 -1.8896 3.1274 12 6 2.1781 -3.2040 3.4924 13 6 3.0793 -3.8251 2.4295 14 6 2.2309 -4.5639 1.4240 15 1 1.3181 -4.9119 1.9075 16 7 2.9767 -5.7166 0.9128 17 6 2.3152 -6.7833 0.4218 18 8 1.1002 -6.7887 0.4027 19 6 3.0687 -7.9476 -0.0951 20 6 4.4526 -7.9156 -0.2082 21 6 5.1306 -9.0300 -0.6984 22 7 4.4999 -10.1208 -1.0606 23 6 3.1733 -10.2207 -0.9789 24 6 2.4895 -11.3892 -1.3667 25 6 1.1327 -11.4216 -1.2568 26 7 0.4413 -10.3882 -0.7976 27 6 1.0115 -9.2675 -0.4180 28 6 2.4044 -9.1354 -0.4863 29 6 1.8611 -3.6325 0.2507 30 1 -0.4851 -0.8339 -0.1007 31 1 0.1637 -1.0871 1.7406 32 1 0.0192 -2.8385 2.0219 33 1 2.4461 -1.2034 2.9100 34 1 1.0434 -1.5017 3.9618 35 1 2.7522 -3.0953 4.4125 36 1 1.3491 -3.8859 3.6816 37 1 3.6406 -3.0391 1.9241 38 1 3.7724 -4.5212 2.9018 39 1 3.9467 -5.7121 0.9276 40 1 5.0006 -7.0314 0.0822 41 1 6.2068 -8.9943 -0.7817 42 1 3.0312 -12.2435 -1.7450 43 1 0.6041 -12.3154 -1.5534 44 1 0.4079 -8.4509 -0.0504 45 1 1.0011 -4.0457 -0.2762 46 1 2.7041 -3.5790 -0.4382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034325898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 40.058639 kcal Electronic energy + Delta-G solvation = -29371.422015 eV Core-core repulsion = 25453.965406 eV Total energy + Delta-G solvation = -3917.456609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54020 -41.02206 -39.45116 -39.08477 -36.54002 -35.19539 -34.71374 -32.97097 -32.67574 -32.03827 -30.98096 -27.87540 -26.75993 -26.06444 -25.28104 -25.08965 -24.04829 -22.26740 -21.46093 -21.04735 -19.66513 -19.24236 -19.17280 -18.41168 -17.37120 -17.28913 -16.82684 -16.48122 -16.17629 -15.91557 -15.75998 -15.63125 -15.44817 -15.32422 -15.24302 -14.72696 -14.43120 -14.23176 -14.11311 -13.97414 -13.91571 -13.38822 -13.07671 -12.80625 -12.58151 -12.40202 -12.10984 -11.89065 -11.83555 -11.80181 -11.62296 -11.55809 -11.39747 -11.26156 -10.94059 -10.57876 -10.50328 -10.40261 -10.17973 -9.64039 -8.89513 -8.22177 -5.36756 -1.21813 -0.45420 0.36173 1.59604 1.61279 1.65853 1.76334 1.84304 2.00782 2.67668 2.92874 3.04512 3.10708 3.22956 3.32784 3.41931 3.54815 3.58330 3.59728 3.80443 3.94328 4.13158 4.15667 4.21785 4.25603 4.31126 4.34519 4.49275 4.51661 4.64201 4.67975 4.74190 4.78634 4.85860 4.95468 4.98645 5.04763 5.23253 5.25704 5.26610 5.34816 5.39252 5.51982 5.54548 5.63068 5.92286 6.31410 6.35144 6.58039 6.80768 6.98091 7.10264 7.83364 8.18146 8.91154 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018482 B = 0.002617 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.655079 B =10696.217090 C =10827.347240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.067 4.067 3 Si 1.101 2.899 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.361 4.361 8 H 0.049 0.951 9 N -0.595 5.595 10 C 0.137 3.863 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.105 4.105 14 C 0.149 3.851 15 H 0.066 0.934 16 N -0.690 5.690 17 C 0.554 3.446 18 O -0.561 6.561 19 C -0.065 4.065 20 C -0.117 4.117 21 C 0.157 3.843 22 N -0.475 5.475 23 C 0.135 3.865 24 C -0.142 4.142 25 C 0.083 3.917 26 N -0.510 5.510 27 C 0.136 3.864 28 C -0.150 4.150 29 C 0.145 3.855 30 H 0.250 0.750 31 H 0.047 0.953 32 H 0.020 0.980 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.419 0.581 40 H 0.188 0.812 41 H 0.220 0.780 42 H 0.174 0.826 43 H 0.192 0.808 44 H 0.178 0.822 45 H -0.017 1.017 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.712 -20.116 3.521 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.266 4.266 3 Si 0.927 3.073 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.490 4.490 8 H 0.066 0.934 9 N -0.318 5.318 10 C 0.010 3.990 11 C -0.169 4.169 12 C -0.138 4.138 13 C -0.143 4.143 14 C 0.043 3.957 15 H 0.084 0.916 16 N -0.342 5.342 17 C 0.342 3.658 18 O -0.441 6.441 19 C -0.078 4.078 20 C -0.137 4.137 21 C -0.017 4.017 22 N -0.184 5.184 23 C 0.009 3.991 24 C -0.162 4.162 25 C -0.062 4.062 26 N -0.218 5.218 27 C -0.034 4.034 28 C -0.155 4.155 29 C 0.019 3.981 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.258 0.742 40 H 0.205 0.795 41 H 0.236 0.764 42 H 0.191 0.809 43 H 0.209 0.791 44 H 0.194 0.806 45 H 0.001 0.999 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.154 -19.514 3.254 23.758 hybrid contribution 0.112 -0.629 -0.299 0.705 sum 13.266 -20.143 2.956 24.300 Atomic orbital electron populations 1.70871 1.08266 1.28941 1.47713 1.26907 0.95828 1.04619 0.99205 0.83052 0.74470 0.72612 0.77180 1.20774 1.22749 1.19676 1.20074 1.04717 0.93003 1.31213 0.93366 1.43795 1.60553 1.00619 1.26809 1.20958 0.92657 0.98968 0.86369 1.21194 0.99925 0.98207 0.97526 1.20252 0.98963 0.96082 0.98506 1.21210 0.97957 0.99644 0.95523 1.21195 0.95475 0.84586 0.94398 0.91566 1.45845 1.11137 1.15516 1.61730 1.18419 0.86964 0.82875 0.77571 1.90638 1.15260 1.81242 1.56938 1.20260 0.95323 0.92626 0.99615 1.23021 0.91984 1.02141 0.96588 1.23976 1.02960 0.86010 0.88729 1.67954 1.07642 1.27289 1.15506 1.19174 0.90264 0.93680 0.95945 1.22044 0.95272 0.97830 1.01093 1.22936 0.91757 0.97275 0.94202 1.67695 1.42246 1.00907 1.10987 1.24194 0.91896 0.95418 0.91907 1.19757 0.96605 0.95656 1.03447 1.21567 0.96708 0.85179 0.94667 0.94022 0.93503 0.96139 0.93220 0.92129 0.90183 0.93108 0.91436 0.88374 0.74171 0.79466 0.76406 0.80860 0.79143 0.80596 0.99882 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.43 12.01 21.65 0.26 -55.17 16 2 C -0.07 -3.73 4.56 84.86 0.39 -3.34 16 3 Si 1.10 49.59 30.04 68.60 2.06 51.65 16 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.36 -19.45 9.19 84.03 0.77 -18.68 16 8 H 0.05 2.62 7.95 -2.91 -0.02 2.60 16 9 N -0.59 -28.80 2.13 -697.69 -1.48 -30.29 16 10 C 0.14 6.37 5.00 87.37 0.44 6.81 16 11 C -0.13 -4.74 5.74 29.40 0.17 -4.57 16 12 C -0.10 -2.86 5.16 28.62 0.15 -2.71 16 13 C -0.11 -2.78 5.07 29.76 0.15 -2.63 16 14 C 0.15 4.64 2.27 44.74 0.10 4.74 16 15 H 0.07 2.36 6.75 -2.39 -0.02 2.34 16 16 N -0.69 -16.01 4.94 -446.46 -2.20 -18.21 16 17 C 0.55 15.26 7.71 86.84 0.67 15.93 16 18 O -0.56 -20.42 13.28 -3.79 -0.05 -20.47 16 19 C -0.07 -1.44 5.94 -19.70 -0.12 -1.56 16 20 C -0.12 -1.46 9.59 22.69 0.22 -1.24 16 21 C 0.16 1.80 11.14 85.07 0.95 2.75 16 22 N -0.48 -8.77 10.33 -188.55 -1.95 -10.72 16 23 C 0.13 3.03 6.63 40.45 0.27 3.30 16 24 C -0.14 -2.69 10.08 22.42 0.23 -2.46 16 25 C 0.08 1.68 11.06 84.10 0.93 2.61 16 26 N -0.51 -14.19 10.31 -195.81 -2.02 -16.21 16 27 C 0.14 4.06 10.52 85.21 0.90 4.96 16 28 C -0.15 -3.88 5.77 -21.11 -0.12 -4.00 16 29 C 0.15 6.07 5.86 86.61 0.51 6.58 16 30 H 0.25 15.76 7.74 -92.71 -0.72 15.04 16 31 H 0.05 2.55 5.10 -2.39 -0.01 2.54 16 32 H 0.02 0.93 8.06 -2.39 -0.02 0.91 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.45 7.35 -2.39 -0.02 1.44 16 37 H 0.07 2.07 7.49 -2.38 -0.02 2.05 16 38 H 0.10 1.79 7.94 -2.39 -0.02 1.77 16 39 H 0.42 5.97 6.73 -92.70 -0.62 5.35 16 40 H 0.19 0.77 6.57 -2.91 -0.02 0.75 16 41 H 0.22 0.37 8.06 -2.91 -0.02 0.35 16 42 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 43 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 44 H 0.18 5.95 5.09 -2.91 -0.01 5.94 16 45 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.05 2.08 7.82 -2.39 -0.02 2.06 16 Total: -1.00 -77.04 366.95 1.66 -75.38 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 0.45 Total: 17.57 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.59 Total: 6.46 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -7.39 Total: -130.60 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.05 Total: -20.47 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.06 Total: 51.65 kcal Total: -77.04 1.66 -75.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034325898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.441 kcal (2) G-P(sol) polarization free energy of solvation -77.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds