Wall clock time and date at job start Sat Apr 11 2020 06:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48499 * 109.46901 * 270.00022 * 3 2 1 5 5 H 1.48502 * 109.47017 * 30.00109 * 3 2 1 6 6 H 1.48503 * 109.46644 * 150.00045 * 3 2 1 7 7 C 1.38809 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99727 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00357 * 359.97438 * 7 2 1 10 10 C 1.47662 * 134.45923 * 180.02562 * 9 7 2 11 11 C 1.53515 * 85.98165 * 204.29658 * 10 9 7 12 12 C 1.47675 * 134.45573 * 359.97438 * 9 7 2 13 13 C 1.52672 * 113.57149 * 91.01587 * 11 10 9 14 14 C 1.53332 * 109.11218 * 73.81412 * 13 11 10 15 15 N 1.46884 * 108.76119 * 52.40814 * 14 13 11 16 16 C 1.34779 * 120.46798 * 124.47408 * 15 14 13 17 17 O 1.21533 * 119.99574 * 359.91386 * 16 15 14 18 18 C 1.48055 * 120.00179 * 179.97438 * 16 15 14 19 19 C 1.39765 * 119.46997 * 156.72564 * 18 16 15 20 20 C 1.38141 * 119.57203 * 180.23191 * 19 18 16 21 21 C 1.39256 * 118.37770 * 359.49875 * 20 19 18 22 22 N 1.37345 * 133.61096 * 180.11940 * 21 20 19 23 23 H 0.96992 * 125.05485 * 0.36571 * 22 21 20 24 24 C 1.36719 * 109.89483 * 180.34350 * 22 21 20 25 25 C 1.34286 * 110.02480 * 0.02562 * 24 22 21 26 26 C 1.41192 * 119.09577 * 0.49489 * 21 20 19 27 27 N 1.32443 * 119.46897 * 336.69463 * 18 16 15 28 28 C 1.46881 * 119.06785 * 304.73965 * 15 14 13 29 29 C 1.52668 * 113.56650 * 222.23175 * 11 10 9 30 30 H 0.97001 * 120.00112 * 359.97438 * 1 2 3 31 31 H 1.09004 * 113.79268 * 90.03537 * 10 9 7 32 32 H 1.09005 * 113.79459 * 318.56624 * 10 9 7 33 33 H 1.08998 * 113.79013 * 41.43094 * 12 9 7 34 34 H 1.08998 * 113.79141 * 269.96566 * 12 9 7 35 35 H 1.09003 * 109.53290 * 313.92682 * 13 11 10 36 36 H 1.08998 * 109.53313 * 193.71041 * 13 11 10 37 37 H 1.09005 * 109.59332 * 292.62311 * 14 13 11 38 38 H 1.09007 * 109.59092 * 172.18962 * 14 13 11 39 39 H 1.08000 * 120.21483 * 359.94674 * 19 18 16 40 40 H 1.08003 * 120.80848 * 179.74532 * 20 19 18 41 41 H 1.07996 * 124.99311 * 179.97438 * 24 22 21 42 42 H 1.08005 * 126.48704 * 180.02562 * 25 24 22 43 43 H 1.09005 * 109.59068 * 175.04184 * 28 15 14 44 44 H 1.09001 * 109.59272 * 295.48276 * 28 15 14 45 45 H 1.09001 * 109.52682 * 46.07685 * 29 11 10 46 46 H 1.08998 * 109.52753 * 166.22097 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.7212 -3.8107 -0.0005 11 6 0.3477 -4.0810 -0.6306 12 6 -0.1044 -2.7567 0.0004 13 6 0.3612 -4.0585 -2.1571 14 6 1.0379 -5.3345 -2.6720 15 7 0.3921 -6.4967 -2.0478 16 6 -0.1302 -7.4789 -2.8087 17 8 -0.0700 -7.4060 -4.0203 18 6 -0.7784 -8.6460 -2.1686 19 6 -1.7190 -9.3897 -2.8866 20 6 -2.3286 -10.4762 -2.2897 21 6 -1.9716 -10.8003 -0.9833 22 7 -2.3637 -11.7859 -0.1109 23 1 -3.0162 -12.4763 -0.3070 24 6 -1.6973 -11.6496 1.0751 25 6 -0.8679 -10.5950 1.0179 26 6 -1.0137 -10.0061 -0.3162 27 7 -0.4570 -8.9689 -0.9249 28 6 0.3181 -6.5705 -0.5827 29 6 -0.3580 -5.3057 -0.0538 30 1 -0.4850 0.8400 0.0004 31 1 1.8385 -4.2345 0.9969 32 1 2.5595 -4.0340 -0.6606 33 1 -0.7174 -2.1421 -0.6588 34 1 -0.5293 -2.8675 0.9980 35 1 0.9158 -3.1866 -2.5039 36 1 -0.6620 -4.0128 -2.5300 37 1 2.0956 -5.3190 -2.4089 38 1 0.9295 -5.3941 -3.7551 39 1 -1.9710 -9.1140 -3.8999 40 1 -3.0612 -11.0623 -2.8247 41 1 -1.8204 -12.2948 1.9324 42 1 -0.2160 -10.2473 1.8057 43 1 -0.2643 -7.4441 -0.2897 44 1 1.3240 -6.6437 -0.1692 45 1 -0.2941 -5.2844 1.0341 46 1 -1.4048 -5.2997 -0.3575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035747751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:24 Heat of formation + Delta-G solvation = 114.288189 kcal Electronic energy + Delta-G solvation = -29458.168524 eV Core-core repulsion = 25543.930749 eV Total energy + Delta-G solvation = -3914.237775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95073 -40.24970 -38.81987 -37.58940 -35.65833 -33.27230 -32.37865 -31.20835 -30.50560 -29.96072 -29.65779 -26.80463 -25.13550 -24.73969 -23.47238 -23.22696 -22.48772 -21.35030 -21.05243 -19.73743 -18.74232 -17.79262 -17.10972 -16.71878 -16.57988 -15.85353 -15.54219 -15.03940 -14.80031 -14.73372 -14.53104 -14.28324 -13.96613 -13.68486 -13.55844 -13.41293 -13.13089 -13.08516 -12.94948 -12.59150 -12.25264 -11.97044 -11.88874 -11.50038 -11.01015 -10.92730 -10.78143 -10.73370 -10.62922 -10.30330 -10.16800 -10.02181 -9.68746 -9.60279 -9.24718 -8.89384 -8.78749 -8.70092 -8.45511 -8.22258 -6.75911 -5.67641 -2.98814 0.54290 0.76795 2.23605 2.56312 2.78486 3.13117 3.44307 3.49023 3.50844 3.64325 3.86584 4.27374 4.46658 4.53900 4.58250 4.69444 4.88884 5.15753 5.21365 5.29286 5.32695 5.41161 5.48926 5.54636 5.59133 5.67258 5.72710 5.79463 5.93111 6.01399 6.06422 6.08706 6.12295 6.34840 6.36701 6.41766 6.48480 6.58800 6.63122 6.78526 6.79819 6.94070 6.95811 7.02887 7.34573 7.49912 7.51867 7.67168 7.68888 8.08358 8.28928 9.14331 9.80393 10.72268 11.49381 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002536 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.892985 B =11038.090284 C =11754.773166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.127 3.873 11 C -0.109 4.109 12 C 0.173 3.827 13 C -0.095 4.095 14 C 0.111 3.889 15 N -0.580 5.580 16 C 0.571 3.429 17 O -0.546 6.546 18 C 0.080 3.920 19 C -0.098 4.098 20 C -0.092 4.092 21 C 0.063 3.937 22 N -0.590 5.590 23 H 0.419 0.581 24 C 0.066 3.934 25 C -0.181 4.181 26 C 0.083 3.917 27 N -0.405 5.405 28 C 0.080 3.920 29 C -0.119 4.119 30 H 0.252 0.748 31 H 0.031 0.969 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.180 0.820 42 H 0.159 0.841 43 H 0.135 0.865 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.098 -27.831 0.110 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.346 4.346 8 H 0.095 0.905 9 N -0.336 5.336 10 C 0.001 3.999 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.133 4.133 14 C -0.011 4.011 15 N -0.311 5.311 16 C 0.357 3.643 17 O -0.424 6.424 18 C -0.067 4.067 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.047 4.047 22 N -0.194 5.194 23 H 0.256 0.744 24 C -0.062 4.062 25 C -0.207 4.207 26 C -0.052 4.052 27 N -0.117 5.117 28 C -0.042 4.042 29 C -0.158 4.158 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.169 0.831 40 H 0.156 0.844 41 H 0.197 0.803 42 H 0.177 0.823 43 H 0.151 0.849 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.446 -27.010 -0.034 27.768 hybrid contribution -0.448 0.245 -0.115 0.523 sum -6.893 -26.765 -0.149 27.639 Atomic orbital electron populations 1.69824 1.04945 1.25098 1.57051 1.24751 0.95623 0.97363 1.02851 0.86166 0.78570 0.83748 0.77562 1.21625 1.21772 1.20810 1.19015 0.90197 0.82172 1.43245 0.90470 1.45972 1.02406 0.99195 1.85987 1.22580 0.94483 0.86402 0.96391 1.22392 0.97929 0.95682 0.95046 1.22234 0.87993 0.88541 0.96464 1.21472 1.00807 0.96715 0.94302 1.21774 0.96412 0.84283 0.98641 1.47976 1.55067 1.20157 1.07863 1.17812 0.78405 0.81942 0.86131 1.90760 1.59582 1.78844 1.13208 1.21007 0.98073 0.97456 0.90136 1.21703 0.95243 0.93809 1.01204 1.20430 1.01552 0.98421 0.91626 1.19249 0.99401 0.92790 0.93307 1.41621 1.38798 1.27167 1.11786 0.74352 1.21975 0.95240 0.99683 0.89274 1.21645 1.05294 0.98165 0.95579 1.20226 0.96237 0.93089 0.95631 1.67041 1.23855 1.12753 1.08072 1.22748 1.02609 1.00898 0.77960 1.21774 0.99358 0.94355 1.00304 0.93804 0.95153 0.94212 0.91113 0.95867 0.89510 0.92201 0.91240 0.89361 0.83109 0.84361 0.80275 0.82342 0.84909 0.91595 0.90955 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.83 11.39 55.49 0.63 -27.19 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.61 -15.84 3.53 -179.73 -0.63 -16.47 16 10 C 0.13 2.66 7.72 -3.15 -0.02 2.63 16 11 C -0.11 -2.08 0.77 -154.41 -0.12 -2.20 16 12 C 0.17 4.15 6.64 -3.15 -0.02 4.13 16 13 C -0.09 -1.74 5.22 -26.73 -0.14 -1.87 16 14 C 0.11 1.80 6.30 -3.66 -0.02 1.78 16 15 N -0.58 -9.15 2.95 -173.98 -0.51 -9.66 16 16 C 0.57 9.13 7.59 -12.23 -0.09 9.04 16 17 O -0.55 -9.90 15.92 5.34 0.08 -9.81 16 18 C 0.08 1.09 6.42 -83.01 -0.53 0.55 16 19 C -0.10 -1.07 9.59 -39.05 -0.37 -1.44 16 20 C -0.09 -0.77 10.18 -39.24 -0.40 -1.17 16 21 C 0.06 0.56 7.29 -83.90 -0.61 -0.06 16 22 N -0.59 -3.11 6.05 -10.58 -0.06 -3.18 16 23 H 0.42 0.82 8.96 -40.82 -0.37 0.45 16 24 C 0.07 0.33 11.81 -16.77 -0.20 0.13 16 25 C -0.18 -1.44 11.08 -37.62 -0.42 -1.86 16 26 C 0.08 0.91 7.52 -83.09 -0.62 0.29 16 27 N -0.41 -5.28 6.44 -6.43 -0.04 -5.32 16 28 C 0.08 1.17 5.85 -3.91 -0.02 1.15 16 29 C -0.12 -1.90 5.24 -26.97 -0.14 -2.04 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.04 0.80 7.41 -51.93 -0.38 0.42 16 33 H 0.07 1.89 7.12 -51.93 -0.37 1.52 16 34 H 0.02 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.09 1.78 8.01 -51.93 -0.42 1.37 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.10 7.49 -51.93 -0.39 0.71 16 38 H 0.09 1.45 6.97 -51.92 -0.36 1.09 16 39 H 0.15 1.51 7.79 -52.49 -0.41 1.10 16 40 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.18 0.18 8.06 -52.49 -0.42 -0.24 16 42 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.13 1.87 3.95 -79.43 -0.31 1.56 16 44 H 0.07 0.95 8.08 -51.93 -0.42 0.54 16 45 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -35.56 369.26 -10.35 -45.90 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.35 Total: 0.30 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -4.00 Total: 2.29 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: -0.62 Total: -61.82 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.56 -10.35 -45.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035747751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.190 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds