Wall clock time and date at job start Sat Apr 11 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00176 * 2 1 4 4 H 1.48494 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47067 * 300.00206 * 3 2 1 6 6 H 1.48504 * 109.46788 * 59.99935 * 3 2 1 7 7 C 1.38811 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99653 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00510 * 0.02562 * 7 2 1 10 10 C 1.47657 * 134.46120 * 180.02562 * 9 7 2 11 11 C 1.53511 * 85.98073 * 204.29203 * 10 9 7 12 12 C 1.47674 * 134.45193 * 359.96945 * 9 7 2 13 13 C 1.52674 * 113.57018 * 91.01194 * 11 10 9 14 14 C 1.53334 * 109.11248 * 73.81794 * 13 11 10 15 15 N 1.46885 * 108.76239 * 52.40309 * 14 13 11 16 16 C 1.34779 * 120.46653 * 124.47332 * 15 14 13 17 17 O 1.21568 * 119.99974 * 188.01660 * 16 15 14 18 18 C 1.47762 * 119.99926 * 8.01234 * 16 15 14 19 19 N 1.32743 * 120.05728 * 7.68461 * 18 16 15 20 20 C 1.31721 * 122.13098 * 180.02562 * 19 18 16 21 21 C 1.38311 * 121.68974 * 0.03966 * 20 19 18 22 22 C 1.39021 * 119.09184 * 359.93326 * 21 20 19 23 23 N 1.37187 * 134.64795 * 180.02562 * 22 21 20 24 24 H 0.97008 * 125.05993 * 359.97438 * 23 22 21 25 25 C 1.36718 * 109.87841 * 180.26005 * 23 22 21 26 26 C 1.34567 * 109.95365 * 359.55163 * 25 23 22 27 27 C 1.40414 * 120.05708 * 187.71061 * 18 16 15 28 28 C 1.46880 * 119.06898 * 304.74547 * 15 14 13 29 29 C 1.52668 * 113.56721 * 222.23108 * 11 10 9 30 30 H 0.97003 * 119.99501 * 0.02562 * 1 2 3 31 31 H 1.08994 * 113.79348 * 90.02344 * 10 9 7 32 32 H 1.09008 * 113.78814 * 318.55929 * 10 9 7 33 33 H 1.08995 * 113.78747 * 41.43770 * 12 9 7 34 34 H 1.08996 * 113.78730 * 269.97040 * 12 9 7 35 35 H 1.08997 * 109.53179 * 313.92307 * 13 11 10 36 36 H 1.09006 * 109.52593 * 193.70666 * 13 11 10 37 37 H 1.08992 * 109.58790 * 292.62091 * 14 13 11 38 38 H 1.09003 * 109.59180 * 172.18110 * 14 13 11 39 39 H 1.07999 * 119.15458 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.45132 * 180.02562 * 21 20 19 41 41 H 1.07995 * 125.02218 * 179.69834 * 25 23 22 42 42 H 1.07997 * 126.50400 * 180.14792 * 26 25 23 43 43 H 1.08995 * 109.59052 * 175.04171 * 28 15 14 44 44 H 1.09007 * 109.58711 * 295.47556 * 28 15 14 45 45 H 1.09004 * 109.53116 * 46.07359 * 29 11 10 46 46 H 1.08993 * 109.53115 * 166.22239 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7212 -3.8107 0.0015 11 6 0.3482 -4.0813 -0.6294 12 6 -0.1044 -2.7567 0.0006 13 6 0.3627 -4.0594 -2.1559 14 6 1.0397 -5.3356 -2.6699 15 7 0.3934 -6.4975 -2.0455 16 6 -0.1284 -7.4800 -2.8064 17 8 -0.7873 -8.3625 -2.2917 18 6 0.1004 -7.4845 -4.2662 19 7 0.9416 -6.6135 -4.8100 20 6 1.1757 -6.5809 -6.1059 21 6 0.5548 -7.4561 -6.9785 22 6 -0.3379 -8.3946 -6.4736 23 7 -1.1092 -9.3859 -7.0253 24 1 -1.1472 -9.6016 -7.9703 25 6 -1.8214 -10.0203 -6.0457 26 6 -1.5351 -9.4802 -4.8469 27 6 -0.5720 -8.4098 -5.0806 28 6 0.3184 -6.5707 -0.5805 29 6 -0.3580 -5.3057 -0.0525 30 1 -0.4849 0.8401 -0.0004 31 1 1.8379 -4.2340 0.9991 32 1 2.5600 -4.0342 -0.6579 33 1 -0.7168 -2.1424 -0.6594 34 1 -0.5299 -2.8670 0.9980 35 1 0.9175 -3.1876 -2.5026 36 1 -0.6603 -4.0138 -2.5294 37 1 2.0971 -5.3200 -2.4060 38 1 0.9320 -5.3958 -3.7529 39 1 1.8700 -5.8520 -6.4970 40 1 0.7619 -7.4120 -8.0376 41 1 -2.5099 -10.8360 -6.2095 42 1 -1.9448 -9.7789 -3.8933 43 1 -0.2642 -7.4441 -0.2876 44 1 1.3241 -6.6439 -0.1663 45 1 -0.2948 -5.2839 1.0354 46 1 -1.4046 -5.2998 -0.3569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035797599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:30 Heat of formation + Delta-G solvation = 117.934808 kcal Electronic energy + Delta-G solvation = -29637.606501 eV Core-core repulsion = 25723.526855 eV Total energy + Delta-G solvation = -3914.079645 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91445 -40.12468 -38.70303 -37.97116 -35.55418 -32.74649 -32.29309 -31.21038 -30.57600 -30.18286 -29.33811 -26.81730 -25.13961 -24.73625 -23.18372 -23.10047 -22.61667 -21.49752 -20.93489 -19.95987 -18.42154 -17.87796 -16.80745 -16.60654 -16.20379 -15.77896 -15.49628 -15.40583 -14.84010 -14.77261 -14.58168 -14.43552 -13.93084 -13.65587 -13.38255 -13.33430 -13.24136 -13.13001 -12.67570 -12.32993 -12.04624 -11.99493 -11.91790 -11.48159 -10.99388 -10.96152 -10.77894 -10.65069 -10.44463 -10.20252 -10.18789 -9.97585 -9.60150 -9.39373 -9.21314 -9.19119 -8.80602 -8.62055 -8.30951 -8.07491 -6.74947 -5.67183 -2.98210 0.29286 1.19631 2.35610 2.64242 2.81467 3.16244 3.43630 3.48941 3.51460 3.82144 4.08733 4.30557 4.49034 4.53828 4.69013 4.82214 5.04316 5.16891 5.17902 5.24726 5.34719 5.44280 5.52075 5.61383 5.65377 5.70895 5.73501 5.82402 5.96444 6.07958 6.12528 6.18164 6.31447 6.36940 6.41376 6.48778 6.51400 6.59457 6.76496 6.82126 6.91821 6.98671 7.04360 7.07540 7.36211 7.52146 7.56925 7.69914 7.74643 8.08935 8.32833 9.14880 9.80878 10.73107 11.49889 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.002714 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.582039 B =10315.301578 C =11185.833336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.610 5.610 10 C 0.127 3.873 11 C -0.109 4.109 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.066 3.934 15 N -0.580 5.580 16 C 0.567 3.433 17 O -0.541 6.541 18 C 0.144 3.856 19 N -0.458 5.458 20 C 0.095 3.905 21 C -0.161 4.161 22 C 0.120 3.880 23 N -0.590 5.590 24 H 0.419 0.581 25 C 0.044 3.956 26 C -0.165 4.165 27 C -0.111 4.111 28 C 0.113 3.887 29 C -0.116 4.116 30 H 0.251 0.749 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.023 0.977 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.151 0.849 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.177 0.823 42 H 0.162 0.838 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.153 -21.061 -16.160 26.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.001 3.999 11 C -0.110 4.110 12 C 0.047 3.953 13 C -0.134 4.134 14 C -0.056 4.056 15 N -0.311 5.311 16 C 0.354 3.646 17 O -0.419 6.419 18 C 0.000 4.000 19 N -0.171 5.171 20 C -0.057 4.057 21 C -0.185 4.185 22 C 0.005 3.995 23 N -0.194 5.194 24 H 0.256 0.744 25 C -0.081 4.081 26 C -0.191 4.191 27 C -0.120 4.120 28 C -0.010 4.010 29 C -0.155 4.155 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.167 0.833 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.194 0.806 42 H 0.180 0.820 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.024 -20.620 -15.469 25.857 hybrid contribution 0.081 0.485 -0.761 0.906 sum -1.943 -20.136 -16.229 25.935 Atomic orbital electron populations 1.69842 1.04932 1.24942 1.57168 1.24755 0.95621 0.97346 1.02930 0.86097 0.78738 0.84081 0.77176 1.20559 1.21828 1.21919 1.19062 0.90208 0.82162 1.43032 0.90429 1.45975 1.02416 0.99198 1.85942 1.22582 0.94596 0.86413 0.96315 1.22408 0.97733 0.95377 0.95519 1.22237 0.87971 0.88608 0.96467 1.21515 1.00549 0.97486 0.93896 1.23276 0.95973 0.83113 1.03250 1.47984 1.55618 1.20819 1.06632 1.17746 0.79706 0.82298 0.84864 1.90722 1.39729 1.38198 1.73240 1.20775 0.93576 0.91670 0.94005 1.67592 1.16053 1.20152 1.13345 1.22609 0.97650 0.97260 0.88193 1.21164 0.98969 0.96849 1.01471 1.18285 0.95900 0.92561 0.92720 1.41655 1.38111 1.29679 1.09908 0.74386 1.22096 0.98799 0.99723 0.87460 1.21946 1.01088 0.97728 0.98310 1.19800 1.00895 0.99210 0.92054 1.21577 1.01161 0.99346 0.78873 1.21721 0.99622 0.93934 1.00260 0.93875 0.95290 0.94130 0.91116 0.95922 0.89727 0.92694 0.91910 0.83298 0.81578 0.84692 0.80562 0.82002 0.89577 0.91437 0.90898 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.77 11.39 55.49 0.63 -27.14 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.61 -15.82 3.53 -179.77 -0.64 -16.46 16 10 C 0.13 2.65 7.72 -3.15 -0.02 2.63 16 11 C -0.11 -2.09 0.77 -154.41 -0.12 -2.21 16 12 C 0.17 4.16 6.64 -3.15 -0.02 4.14 16 13 C -0.10 -1.74 5.22 -26.73 -0.14 -1.88 16 14 C 0.07 1.02 5.82 -3.66 -0.02 1.00 16 15 N -0.58 -9.12 2.95 -174.10 -0.51 -9.63 16 16 C 0.57 9.14 7.64 -12.37 -0.09 9.05 16 17 O -0.54 -9.51 14.61 5.31 0.08 -9.44 16 18 C 0.14 2.05 6.64 -82.76 -0.55 1.50 16 19 N -0.46 -5.87 6.07 -9.66 -0.06 -5.92 16 20 C 0.10 0.91 11.13 -17.57 -0.20 0.72 16 21 C -0.16 -1.33 10.14 -39.26 -0.40 -1.73 16 22 C 0.12 1.17 7.34 -84.03 -0.62 0.55 16 23 N -0.59 -3.93 6.04 -10.60 -0.06 -3.99 16 24 H 0.42 1.29 8.96 -40.82 -0.37 0.92 16 25 C 0.04 0.32 11.82 -16.67 -0.20 0.12 16 26 C -0.17 -1.81 10.27 -37.83 -0.39 -2.19 16 27 C -0.11 -1.41 6.15 -104.88 -0.64 -2.06 16 28 C 0.11 1.70 6.29 -3.91 -0.02 1.67 16 29 C -0.12 -1.90 5.24 -26.97 -0.14 -2.04 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.04 0.82 7.41 -51.92 -0.38 0.43 16 33 H 0.07 1.89 7.12 -51.93 -0.37 1.52 16 34 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.08 1.72 8.01 -51.93 -0.42 1.30 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.98 7.49 -51.93 -0.39 0.59 16 38 H 0.15 2.21 3.85 -90.62 -0.35 1.86 16 39 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 42 H 0.16 1.87 7.26 -52.49 -0.38 1.48 16 43 H 0.09 1.29 6.98 -51.93 -0.36 0.92 16 44 H 0.07 0.96 8.08 -51.93 -0.42 0.55 16 45 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -35.21 366.55 -10.25 -45.47 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.36 Total: 1.57 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -3.83 Total: 2.54 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.64 Total: -63.14 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.21 -10.25 -45.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035797599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.400 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds