Wall clock time and date at job start Sat Apr 11 2020 06:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 120.00176 * 2 1 4 4 H 1.48494 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47067 * 300.00206 * 3 2 1 6 6 H 1.48504 * 109.46788 * 59.99935 * 3 2 1 7 7 C 1.38811 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99653 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00510 * 0.02562 * 7 2 1 10 10 C 1.47657 * 134.46120 * 180.02562 * 9 7 2 11 11 C 1.53511 * 85.98073 * 204.29203 * 10 9 7 12 12 C 1.47674 * 134.45193 * 359.96945 * 9 7 2 13 13 C 1.52674 * 113.57018 * 91.01194 * 11 10 9 14 14 C 1.53334 * 109.11248 * 73.81794 * 13 11 10 15 15 N 1.46885 * 108.76239 * 52.40309 * 14 13 11 16 16 C 1.34779 * 120.46653 * 124.47332 * 15 14 13 17 17 O 1.21568 * 119.99974 * 188.01660 * 16 15 14 18 18 C 1.47762 * 119.99926 * 8.01234 * 16 15 14 19 19 N 1.32743 * 120.05728 * 7.68461 * 18 16 15 20 20 C 1.31721 * 122.13098 * 180.02562 * 19 18 16 21 21 C 1.38311 * 121.68974 * 0.03966 * 20 19 18 22 22 C 1.39021 * 119.09184 * 359.93326 * 21 20 19 23 23 N 1.37187 * 134.64795 * 180.02562 * 22 21 20 24 24 H 0.97008 * 125.05993 * 359.97438 * 23 22 21 25 25 C 1.36718 * 109.87841 * 180.26005 * 23 22 21 26 26 C 1.34567 * 109.95365 * 359.55163 * 25 23 22 27 27 C 1.40414 * 120.05708 * 187.71061 * 18 16 15 28 28 C 1.46880 * 119.06898 * 304.74547 * 15 14 13 29 29 C 1.52668 * 113.56721 * 222.23108 * 11 10 9 30 30 H 0.97003 * 119.99501 * 0.02562 * 1 2 3 31 31 H 1.08994 * 113.79348 * 90.02344 * 10 9 7 32 32 H 1.09008 * 113.78814 * 318.55929 * 10 9 7 33 33 H 1.08995 * 113.78747 * 41.43770 * 12 9 7 34 34 H 1.08996 * 113.78730 * 269.97040 * 12 9 7 35 35 H 1.08997 * 109.53179 * 313.92307 * 13 11 10 36 36 H 1.09006 * 109.52593 * 193.70666 * 13 11 10 37 37 H 1.08992 * 109.58790 * 292.62091 * 14 13 11 38 38 H 1.09003 * 109.59180 * 172.18110 * 14 13 11 39 39 H 1.07999 * 119.15458 * 180.02562 * 20 19 18 40 40 H 1.08002 * 120.45132 * 180.02562 * 21 20 19 41 41 H 1.07995 * 125.02218 * 179.69834 * 25 23 22 42 42 H 1.07997 * 126.50400 * 180.14792 * 26 25 23 43 43 H 1.08995 * 109.59052 * 175.04171 * 28 15 14 44 44 H 1.09007 * 109.58711 * 295.47556 * 28 15 14 45 45 H 1.09004 * 109.53116 * 46.07359 * 29 11 10 46 46 H 1.08993 * 109.53115 * 166.22239 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.7212 -3.8107 0.0015 11 6 0.3482 -4.0813 -0.6294 12 6 -0.1044 -2.7567 0.0006 13 6 0.3627 -4.0594 -2.1559 14 6 1.0397 -5.3356 -2.6699 15 7 0.3934 -6.4975 -2.0455 16 6 -0.1284 -7.4800 -2.8064 17 8 -0.7873 -8.3625 -2.2917 18 6 0.1004 -7.4845 -4.2662 19 7 0.9416 -6.6135 -4.8100 20 6 1.1757 -6.5809 -6.1059 21 6 0.5548 -7.4561 -6.9785 22 6 -0.3379 -8.3946 -6.4736 23 7 -1.1092 -9.3859 -7.0253 24 1 -1.1472 -9.6016 -7.9703 25 6 -1.8214 -10.0203 -6.0457 26 6 -1.5351 -9.4802 -4.8469 27 6 -0.5720 -8.4098 -5.0806 28 6 0.3184 -6.5707 -0.5805 29 6 -0.3580 -5.3057 -0.0525 30 1 -0.4849 0.8401 -0.0004 31 1 1.8379 -4.2340 0.9991 32 1 2.5600 -4.0342 -0.6579 33 1 -0.7168 -2.1424 -0.6594 34 1 -0.5299 -2.8670 0.9980 35 1 0.9175 -3.1876 -2.5026 36 1 -0.6603 -4.0138 -2.5294 37 1 2.0971 -5.3200 -2.4060 38 1 0.9320 -5.3958 -3.7529 39 1 1.8700 -5.8520 -6.4970 40 1 0.7619 -7.4120 -8.0376 41 1 -2.5099 -10.8360 -6.2095 42 1 -1.9448 -9.7789 -3.8933 43 1 -0.2642 -7.4441 -0.2876 44 1 1.3241 -6.6439 -0.1663 45 1 -0.2948 -5.2839 1.0354 46 1 -1.4046 -5.2998 -0.3569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035797599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:29 Heat of formation + Delta-G solvation = 95.309418 kcal Electronic energy + Delta-G solvation = -29638.587611 eV Core-core repulsion = 25723.526855 eV Total energy + Delta-G solvation = -3915.060756 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.66349 -41.43613 -40.08487 -38.88915 -37.00708 -34.41600 -33.44303 -32.32178 -31.78143 -31.52540 -30.17207 -28.64081 -26.76530 -26.06322 -24.51361 -24.39312 -23.47343 -22.95035 -21.96017 -21.06864 -19.44531 -18.89034 -18.67251 -18.06380 -17.16889 -16.89851 -16.74841 -16.49251 -16.20090 -16.07315 -15.72700 -15.61169 -15.46496 -15.02821 -14.84055 -14.46973 -14.21677 -14.00345 -13.80563 -13.69963 -13.62899 -13.39856 -13.06558 -12.86917 -12.82087 -12.74270 -12.59065 -12.12002 -12.06663 -11.79077 -11.63463 -11.18934 -11.08471 -10.96111 -10.94177 -10.81967 -9.98718 -9.70818 -9.55176 -8.85791 -8.83723 -7.85820 -5.18459 -0.52932 0.44825 1.45866 1.47139 1.57414 1.60878 1.83460 1.98780 2.12495 2.50077 2.92773 3.14826 3.34349 3.44775 3.56173 3.68513 3.87045 3.99083 4.04354 4.07549 4.18210 4.26636 4.39791 4.43836 4.47006 4.51835 4.62405 4.72179 4.76791 4.82937 4.89878 4.92820 4.95681 5.05133 5.09351 5.15843 5.22912 5.27227 5.30565 5.39029 5.53065 5.58468 5.61634 5.70244 5.81413 5.97413 6.00376 6.43010 6.60356 6.81827 6.96425 7.17686 7.65503 8.63599 9.31256 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.002714 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.582039 B =10315.301578 C =11185.833336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.636 5.636 10 C 0.131 3.869 11 C -0.085 4.085 12 C 0.169 3.831 13 C -0.089 4.089 14 C 0.080 3.920 15 N -0.586 5.586 16 C 0.563 3.437 17 O -0.566 6.566 18 C 0.101 3.899 19 N -0.474 5.474 20 C 0.078 3.922 21 C -0.135 4.135 22 C 0.108 3.892 23 N -0.572 5.572 24 H 0.440 0.560 25 C 0.088 3.912 26 C -0.221 4.221 27 C -0.132 4.132 28 C 0.116 3.884 29 C -0.108 4.108 30 H 0.246 0.754 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.011 0.989 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.164 0.836 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.223 0.777 42 H 0.143 0.857 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.173 -22.901 -19.061 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.263 4.263 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.356 4.356 8 H 0.100 0.900 9 N -0.362 5.362 10 C 0.006 3.994 11 C -0.086 4.086 12 C 0.043 3.957 13 C -0.127 4.127 14 C -0.042 4.042 15 N -0.316 5.316 16 C 0.352 3.648 17 O -0.445 6.445 18 C -0.041 4.041 19 N -0.187 5.187 20 C -0.075 4.075 21 C -0.157 4.157 22 C -0.007 4.007 23 N -0.177 5.177 24 H 0.282 0.718 25 C -0.039 4.039 26 C -0.246 4.246 27 C -0.141 4.141 28 C -0.006 4.006 29 C -0.147 4.147 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.179 0.821 39 H 0.213 0.787 40 H 0.195 0.805 41 H 0.239 0.761 42 H 0.161 0.839 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.017 -22.498 -18.395 29.079 hybrid contribution -0.268 0.941 0.007 0.978 sum -1.285 -21.557 -18.388 28.363 Atomic orbital electron populations 1.70046 1.06473 1.25254 1.58693 1.25612 0.96516 1.00794 1.03415 0.85021 0.78242 0.79553 0.76601 1.18870 1.21877 1.22240 1.19461 0.90755 0.83454 1.41918 0.89960 1.46321 1.03369 1.00533 1.85985 1.22723 0.95725 0.83613 0.97293 1.22167 0.96394 0.94069 0.95960 1.22158 0.87046 0.90955 0.95533 1.21420 1.00137 0.98113 0.93075 1.23212 0.95419 0.81539 1.04058 1.48030 1.55885 1.20910 1.06773 1.18164 0.78892 0.81719 0.86050 1.90686 1.40751 1.39002 1.74083 1.20470 0.96420 0.94245 0.93009 1.67264 1.15958 1.20203 1.15273 1.23148 0.98627 0.98513 0.87246 1.21591 0.96382 0.94517 1.03238 1.18487 0.96785 0.93726 0.91724 1.41690 1.36740 1.28315 1.10979 0.71821 1.22679 0.96732 0.98488 0.85998 1.21945 1.03484 0.99758 0.99419 1.20114 1.01081 0.99226 0.93647 1.21554 1.01710 0.98384 0.78926 1.21640 0.99121 0.93118 1.00777 0.94508 0.93863 0.92927 0.94626 0.97133 0.92218 0.93316 0.91720 0.82092 0.78731 0.80505 0.76101 0.83898 0.89309 0.90140 0.89871 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.67 11.39 21.65 0.25 -59.42 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 3 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 7 C -0.23 -13.13 10.70 84.03 0.90 -12.23 16 8 H 0.08 4.55 7.83 -2.91 -0.02 4.52 16 9 N -0.64 -33.77 3.53 -722.66 -2.55 -36.33 16 10 C 0.13 5.46 7.72 86.32 0.67 6.12 16 11 C -0.08 -3.31 0.77 -52.03 -0.04 -3.35 16 12 C 0.17 8.49 6.64 86.32 0.57 9.06 16 13 C -0.09 -3.31 5.22 30.60 0.16 -3.15 16 14 C 0.08 2.48 5.82 86.42 0.50 2.99 16 15 N -0.59 -18.59 2.95 -822.99 -2.43 -21.01 16 16 C 0.56 18.68 7.64 86.76 0.66 19.34 16 17 O -0.57 -20.72 14.61 -3.93 -0.06 -20.78 16 18 C 0.10 2.90 6.64 42.06 0.28 3.18 16 19 N -0.47 -11.83 6.07 -184.48 -1.12 -12.95 16 20 C 0.08 1.31 11.13 84.73 0.94 2.26 16 21 C -0.13 -1.74 10.14 22.47 0.23 -1.51 16 22 C 0.11 1.82 7.34 39.24 0.29 2.10 16 23 N -0.57 -5.39 6.04 -187.44 -1.13 -6.52 16 24 H 0.44 0.51 8.96 -92.70 -0.83 -0.32 16 25 C 0.09 0.98 11.82 83.09 0.98 1.96 16 26 C -0.22 -4.74 10.27 23.41 0.24 -4.50 16 27 C -0.13 -3.28 6.15 -20.03 -0.12 -3.41 16 28 C 0.12 3.48 6.29 86.26 0.54 4.03 16 29 C -0.11 -3.53 5.24 30.44 0.16 -3.37 16 30 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 32 H 0.05 2.07 7.41 -2.38 -0.02 2.05 16 33 H 0.04 2.02 7.12 -2.39 -0.02 2.01 16 34 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 35 H 0.06 2.52 8.01 -2.39 -0.02 2.50 16 36 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.06 1.99 7.49 -2.39 -0.02 1.97 16 38 H 0.16 4.79 3.85 -78.78 -0.30 4.49 16 39 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 41 H 0.22 0.35 8.06 -2.91 -0.02 0.32 16 42 H 0.14 3.51 7.26 -2.91 -0.02 3.49 16 43 H 0.09 2.65 6.98 -2.39 -0.02 2.64 16 44 H 0.08 2.20 8.08 -2.38 -0.02 2.18 16 45 H 0.08 2.56 8.12 -2.38 -0.02 2.54 16 46 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -81.17 366.55 2.31 -78.86 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -0.10 Total: 13.28 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 7.43 Total: 15.81 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -6.99 Total: -136.23 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.06 Total: -20.78 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -81.17 2.31 -78.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035797599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.165 kcal (2) G-P(sol) polarization free energy of solvation -81.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds