Wall clock time and date at job start Sat Apr 11 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00220 * 2 1 4 4 H 1.48497 * 109.47272 * 274.98553 * 3 2 1 5 5 H 1.48500 * 109.47245 * 34.98962 * 3 2 1 6 6 H 1.48500 * 109.47179 * 154.98724 * 3 2 1 7 7 C 1.38816 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99988 * 182.56750 * 7 2 1 9 9 N 1.36939 * 120.00080 * 2.56873 * 7 2 1 10 10 C 1.47817 * 125.94117 * 345.27222 * 9 7 2 11 11 C 1.55094 * 104.89170 * 201.58305 * 10 9 7 12 12 C 1.56119 * 101.12053 * 322.99618 * 11 10 9 13 13 H 1.08995 * 112.18950 * 157.72570 * 12 11 10 14 14 C 1.53116 * 106.63867 * 281.13629 * 12 11 10 15 15 N 1.45044 * 110.00863 * 158.89965 * 14 12 11 16 16 C 1.34784 * 120.59164 * 121.66996 * 15 14 12 17 17 O 1.21580 * 119.99965 * 355.18131 * 16 15 14 18 18 C 1.47597 * 119.99616 * 175.18758 * 16 15 14 19 19 C 1.38567 * 119.74080 * 146.46066 * 18 16 15 20 20 N 1.33771 * 122.05282 * 179.76017 * 19 18 16 21 21 H 0.97003 * 119.62477 * 180.24752 * 20 19 18 22 22 C 1.37223 * 120.74323 * 0.49671 * 20 19 18 23 23 N 1.32000 * 134.46743 * 179.77867 * 22 20 19 24 24 C 1.33417 * 110.92802 * 179.97438 * 23 22 20 25 25 C 1.35787 * 110.89047 * 359.97438 * 24 23 22 26 26 C 1.41388 * 106.45322 * 0.02562 * 25 24 23 27 27 C 1.38758 * 135.65063 * 180.02562 * 26 25 24 28 28 C 1.46528 * 118.42765 * 302.25461 * 15 14 12 29 29 C 1.51789 * 110.13100 * 53.20194 * 28 15 14 30 30 C 1.46254 * 125.96129 * 165.35147 * 9 7 2 31 31 H 1.08997 * 105.49799 * 70.57494 * 30 9 7 32 32 H 0.97006 * 119.99175 * 0.02562 * 1 2 3 33 33 H 1.09002 * 110.33730 * 82.74525 * 10 9 7 34 34 H 1.09005 * 110.39642 * 320.45028 * 10 9 7 35 35 H 1.08998 * 111.10143 * 205.01938 * 11 10 9 36 36 H 1.09005 * 111.10088 * 80.96569 * 11 10 9 37 37 H 1.09010 * 109.52536 * 279.95073 * 14 12 11 38 38 H 1.09001 * 109.53302 * 40.16342 * 14 12 11 39 39 H 1.08003 * 118.96810 * 359.97438 * 19 18 16 40 40 H 1.07991 * 124.55211 * 180.02562 * 24 23 22 41 41 H 1.08003 * 126.77398 * 180.02562 * 25 24 23 42 42 H 1.08001 * 120.73623 * 359.97438 * 27 26 25 43 43 H 1.08992 * 109.36344 * 292.99662 * 28 15 14 44 44 H 1.08999 * 109.35642 * 173.40243 * 28 15 14 45 45 H 1.08994 * 108.36301 * 196.93053 * 29 28 15 46 46 H 1.08999 * 108.22555 * 79.72930 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5045 2.6199 0.8028 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0894 -1.2027 0.0424 9 7 1.3266 -2.3875 -0.0521 10 6 -0.1203 -2.5662 0.1923 11 6 -0.2803 -4.0642 0.5609 12 6 0.7692 -4.7219 -0.3896 13 1 1.0926 -5.6995 -0.0322 14 6 0.1217 -4.7933 -1.7752 15 7 1.1452 -4.9145 -2.7957 16 6 1.1537 -5.9673 -3.6372 17 8 0.3524 -6.8697 -3.4899 18 6 2.1359 -6.0247 -4.7375 19 6 2.6437 -7.2487 -5.1425 20 7 3.5318 -7.3548 -6.1372 21 1 3.8615 -8.2301 -6.3943 22 6 3.9856 -6.2389 -6.7944 23 7 4.8365 -6.0293 -7.7815 24 6 4.9322 -4.7280 -8.0599 25 6 4.1258 -3.9983 -7.2468 26 6 3.4769 -4.9206 -6.3939 27 6 2.5520 -4.8376 -5.3629 28 6 2.1733 -3.8737 -2.8795 29 6 2.8337 -3.6816 -1.5264 30 6 1.9007 -3.6974 -0.3582 31 1 2.5097 -3.9580 0.5074 32 1 -0.4849 0.8402 -0.0004 33 1 -0.6881 -2.3348 -0.7089 34 1 -0.4466 -1.9354 1.0193 35 1 -1.2870 -4.4177 0.3384 36 1 -0.0273 -4.2403 1.6064 37 1 -0.5521 -5.6492 -1.8189 38 1 -0.4385 -3.8774 -1.9634 39 1 2.3093 -8.1453 -4.6417 40 1 5.5653 -4.3111 -8.8290 41 1 4.0040 -2.9252 -7.2508 42 1 2.1609 -3.8814 -5.0479 43 1 1.7140 -2.9366 -3.1938 44 1 2.9263 -4.1678 -3.6106 45 1 3.3593 -2.7268 -1.5333 46 1 3.5683 -4.4752 -1.3899 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036741199.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:32 Heat of formation + Delta-G solvation = 100.202293 kcal Electronic energy + Delta-G solvation = -30043.221527 eV Core-core repulsion = 26128.372942 eV Total energy + Delta-G solvation = -3914.848585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77065 -40.32868 -38.64135 -37.87251 -35.55819 -34.17829 -32.73648 -31.87920 -30.05732 -29.34929 -28.97988 -27.83700 -25.65512 -24.60024 -24.22458 -22.96407 -22.61817 -21.45940 -20.21000 -19.70737 -18.45655 -18.09612 -17.45562 -16.81911 -16.63807 -16.09933 -15.89970 -15.42653 -15.36354 -14.84860 -14.71404 -14.42618 -14.02142 -13.86599 -13.41214 -13.03444 -12.97059 -12.84876 -12.57021 -12.45620 -12.17493 -12.05591 -11.69072 -11.57571 -11.29688 -11.02844 -10.88370 -10.70228 -10.59882 -10.23048 -10.18548 -9.99958 -9.80784 -9.76908 -9.70046 -9.60977 -8.63229 -8.47406 -8.26151 -7.93059 -6.80672 -5.82488 -3.17067 -0.02420 0.85413 2.03324 2.68929 3.06100 3.29319 3.34081 3.38187 3.40623 3.42029 3.96089 4.24890 4.28163 4.42218 4.53374 4.84115 4.94671 5.05367 5.19501 5.20302 5.34994 5.39747 5.43956 5.50478 5.59958 5.64070 5.75372 5.77070 5.80647 5.87417 6.02684 6.15067 6.17171 6.24026 6.28008 6.32539 6.38467 6.52291 6.60536 6.64891 6.66503 6.87372 6.92595 6.95721 7.46972 7.50784 7.54702 7.73353 7.89724 8.13231 8.21243 9.12509 9.74703 10.45055 11.29985 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012763 B = 0.003526 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.265136 B = 7939.391179 C = 9649.372311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.000 4.000 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.105 4.105 13 H 0.077 0.923 14 C 0.119 3.881 15 N -0.588 5.588 16 C 0.573 3.427 17 O -0.549 6.549 18 C -0.230 4.230 19 C 0.202 3.798 20 N -0.491 5.491 21 H 0.427 0.573 22 C 0.243 3.757 23 N -0.532 5.532 24 C 0.050 3.950 25 C -0.220 4.220 26 C -0.169 4.169 27 C 0.057 3.943 28 C 0.102 3.898 29 C -0.135 4.135 30 C 0.171 3.829 31 H 0.009 0.991 32 H 0.253 0.747 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.189 0.811 40 H 0.159 0.841 41 H 0.141 0.859 42 H 0.153 0.847 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.315 -13.718 -9.126 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.125 4.125 13 H 0.095 0.905 14 C -0.003 4.003 15 N -0.318 5.318 16 C 0.361 3.639 17 O -0.429 6.429 18 C -0.239 4.239 19 C 0.057 3.943 20 N -0.084 5.084 21 H 0.265 0.735 22 C -0.006 4.006 23 N -0.252 5.252 24 C -0.092 4.092 25 C -0.242 4.242 26 C -0.177 4.177 27 C 0.033 3.967 28 C -0.020 4.020 29 C -0.175 4.175 30 C 0.063 3.937 31 H 0.026 0.974 32 H 0.064 0.936 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.206 0.794 40 H 0.177 0.823 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.473 -14.568 -9.640 18.032 hybrid contribution 0.309 1.397 0.295 1.461 sum 4.782 -13.170 -9.344 16.842 Atomic orbital electron populations 1.69932 1.04995 1.25232 1.55860 1.24899 0.95622 0.97672 1.01559 0.86195 0.78855 0.83744 0.77568 1.21525 1.21728 1.20574 1.18896 0.90523 0.82131 1.44247 0.90739 1.44478 1.05033 1.01979 1.80310 1.21523 0.85128 0.89133 0.99452 1.23301 0.97094 0.99689 0.98272 1.22290 0.97140 0.98088 0.94977 0.90485 1.21446 0.89621 1.03126 0.86101 1.47419 1.29179 1.22870 1.32356 1.17623 0.83214 0.81896 0.81172 1.90770 1.40843 1.37297 1.73941 1.19249 1.07517 0.92492 1.04671 1.22091 0.86131 1.00170 0.85890 1.40254 1.32499 1.09872 1.25799 0.73500 1.20473 0.98521 0.85093 0.96531 1.69520 1.20379 1.19862 1.15392 1.22327 0.99301 0.87998 0.99607 1.21459 1.03385 0.99040 1.00338 1.20103 1.03090 0.93731 1.00816 1.21855 0.88553 0.98267 0.88020 1.21887 0.90259 0.90760 0.99069 1.21246 0.99062 1.02624 0.94548 1.19491 0.92642 0.87397 0.94133 0.97355 0.93641 0.95442 0.91373 0.91903 0.91968 0.89360 0.90350 0.79449 0.82332 0.84151 0.82936 0.90389 0.89843 0.89537 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.27 10.59 55.49 0.59 -24.69 16 2 C 0.00 0.00 5.48 -17.43 -0.10 -0.10 16 3 Si 0.91 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.23 -5.88 9.28 -15.06 -0.14 -6.02 16 8 H 0.07 1.86 7.49 -52.49 -0.39 1.47 16 9 N -0.59 -13.70 3.30 -165.66 -0.55 -14.24 16 10 C 0.17 3.84 4.96 -2.21 -0.01 3.82 16 11 C -0.14 -2.51 6.46 -23.95 -0.15 -2.66 16 12 C -0.11 -1.72 3.72 -89.06 -0.33 -2.05 16 13 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.12 1.87 5.42 -4.76 -0.03 1.84 16 15 N -0.59 -8.49 2.93 -176.68 -0.52 -9.01 16 16 C 0.57 7.81 7.38 -12.44 -0.09 7.72 16 17 O -0.55 -8.69 16.10 5.30 0.09 -8.60 16 18 C -0.23 -2.53 5.36 -105.11 -0.56 -3.10 16 19 C 0.20 1.61 10.67 -16.59 -0.18 1.44 16 20 N -0.49 -3.91 5.27 -10.38 -0.05 -3.97 16 21 H 0.43 1.93 8.91 -40.82 -0.36 1.57 16 22 C 0.24 2.96 8.64 -153.91 -1.33 1.63 16 23 N -0.53 -7.34 11.17 -11.09 -0.12 -7.46 16 24 C 0.05 0.64 11.69 -17.74 -0.21 0.43 16 25 C -0.22 -2.75 10.99 -39.26 -0.43 -3.18 16 26 C -0.17 -2.14 6.41 -105.01 -0.67 -2.82 16 27 C 0.06 0.65 7.47 -38.54 -0.29 0.36 16 28 C 0.10 1.46 4.83 -4.64 -0.02 1.43 16 29 C -0.13 -2.20 5.59 -29.07 -0.16 -2.37 16 30 C 0.17 3.22 2.66 -69.95 -0.19 3.04 16 31 H 0.01 0.18 8.08 -51.93 -0.42 -0.24 16 32 H 0.25 6.87 8.31 -40.82 -0.34 6.54 16 33 H 0.03 0.66 6.98 -51.93 -0.36 0.30 16 34 H 0.07 1.73 7.04 -51.93 -0.37 1.36 16 35 H 0.06 0.96 7.98 -51.93 -0.41 0.55 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.35 6.97 -51.92 -0.36 0.99 16 38 H 0.08 1.36 6.49 -51.93 -0.34 1.03 16 39 H 0.19 0.94 7.89 -52.48 -0.41 0.53 16 40 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 42 H 0.15 1.68 5.83 -52.49 -0.31 1.38 16 43 H 0.08 1.22 8.03 -51.93 -0.42 0.80 16 44 H 0.08 1.02 4.26 -51.93 -0.22 0.79 16 45 H 0.09 1.55 6.87 -51.93 -0.36 1.20 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -32.67 358.89 -11.06 -43.72 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.98 Total: 3.46 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -4.89 Total: -0.57 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.65 Total: -59.37 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.67 -11.06 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036741199.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.925 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds