Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99611 * 2 1 4 4 H 1.48503 * 109.46938 * 239.99332 * 3 2 1 5 5 H 1.48496 * 109.47448 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47411 * 119.99938 * 3 2 1 7 7 C 1.38810 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99709 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99980 * 0.02562 * 7 2 1 10 10 C 1.47739 * 125.97108 * 359.97110 * 9 7 2 11 11 C 1.55071 * 104.86976 * 157.70507 * 10 9 7 12 12 C 1.56003 * 101.17331 * 36.82519 * 11 10 9 13 13 H 1.08993 * 110.86677 * 204.43717 * 12 11 10 14 14 C 1.52046 * 107.46975 * 83.32685 * 12 11 10 15 15 N 1.46114 * 111.67634 * 208.66859 * 14 12 11 16 16 C 1.34771 * 120.93737 * 232.42457 * 15 14 12 17 17 O 1.21593 * 119.99790 * 356.32102 * 16 15 14 18 18 C 1.47606 * 120.00248 * 176.31401 * 16 15 14 19 19 C 1.38565 * 119.73577 * 52.25182 * 18 16 15 20 20 N 1.33776 * 122.04882 * 179.97438 * 19 18 16 21 21 H 0.96996 * 119.62769 * 180.02562 * 20 19 18 22 22 C 1.37220 * 120.74371 * 0.02625 * 20 19 18 23 23 N 1.32004 * 134.47490 * 179.97438 * 22 20 19 24 24 C 1.33401 * 110.93223 * 180.02562 * 23 22 20 25 25 C 1.35783 * 110.89824 * 359.97438 * 24 23 22 26 26 C 1.41378 * 106.44992 * 359.97438 * 25 24 23 27 27 C 1.38766 * 135.65797 * 180.33249 * 26 25 24 28 28 C 1.47075 * 118.13327 * 52.44840 * 15 14 12 29 29 C 1.52631 * 107.78700 * 301.17306 * 28 15 14 30 30 C 1.46506 * 125.97242 * 179.97438 * 9 7 2 31 31 H 1.09006 * 106.03025 * 291.67538 * 30 9 7 32 32 H 0.97000 * 120.00493 * 0.02562 * 1 2 3 33 33 H 1.08997 * 110.35890 * 38.85570 * 10 9 7 34 34 H 1.09003 * 110.35595 * 276.54898 * 10 9 7 35 35 H 1.08999 * 111.08128 * 278.85109 * 11 10 9 36 36 H 1.08998 * 111.07822 * 154.80157 * 11 10 9 37 37 H 1.08995 * 109.04193 * 329.24182 * 14 12 11 38 38 H 1.09005 * 109.03629 * 88.10880 * 14 12 11 39 39 H 1.07993 * 118.97355 * 0.02562 * 19 18 16 40 40 H 1.08007 * 124.55123 * 180.02562 * 24 23 22 41 41 H 1.08001 * 126.77582 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.73071 * 359.91911 * 27 26 25 43 43 H 1.08993 * 109.79470 * 181.59620 * 28 15 14 44 44 H 1.08998 * 109.84427 * 60.77041 * 28 15 14 45 45 H 1.08997 * 108.89155 * 291.64554 * 29 28 15 46 46 H 1.09002 * 108.89172 * 173.16819 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1437 -2.5418 0.0006 11 6 -0.3952 -3.9624 -0.5680 12 6 0.7999 -4.7515 0.0505 13 1 1.0394 -5.6281 -0.5514 14 6 0.3972 -5.1599 1.4587 15 7 1.5576 -5.2798 2.3385 16 6 1.7691 -6.3997 3.0578 17 8 0.9543 -7.3019 3.0316 18 6 2.9897 -6.5312 3.8771 19 6 3.3219 -5.5343 4.7804 20 7 4.4165 -5.6062 5.5462 21 1 4.6152 -4.8881 6.1672 22 6 5.2612 -6.6843 5.4630 23 7 6.3826 -7.0294 6.0679 24 6 6.8235 -8.2058 5.6194 25 6 5.9900 -8.7061 4.6714 26 6 4.9463 -7.7646 4.5188 27 6 3.8014 -7.6697 3.7406 28 6 2.4883 -4.1437 2.4175 29 6 3.0224 -3.8799 1.0123 30 6 1.9223 -3.7261 0.0005 31 1 2.3983 -3.8435 -0.9731 32 1 -0.4851 0.8400 -0.0004 33 1 -0.6037 -1.7898 -0.6404 34 1 -0.5329 -2.4653 1.0159 35 1 -0.3442 -3.9636 -1.6568 36 1 -1.3490 -4.3601 -0.2215 37 1 -0.2818 -4.4109 1.8657 38 1 -0.1179 -6.1197 1.4169 39 1 2.6766 -4.6730 4.8695 40 1 7.7224 -8.6952 5.9646 41 1 6.1017 -9.6394 4.1395 42 1 3.5434 -8.4508 3.0408 43 1 3.3134 -4.3883 3.0863 44 1 1.9645 -3.2612 2.7850 45 1 3.6612 -4.7117 0.7156 46 1 3.6186 -2.9674 1.0269 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036741200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 75.888288 kcal Electronic energy + Delta-G solvation = -29919.018541 eV Core-core repulsion = 26003.115622 eV Total energy + Delta-G solvation = -3915.902919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62409 -41.45163 -39.84934 -38.93373 -36.64188 -35.04919 -34.50891 -33.29870 -31.50627 -30.64873 -29.87517 -29.14015 -27.03906 -25.90379 -25.29731 -24.12021 -23.88834 -22.36559 -21.88557 -20.88185 -19.70697 -18.90246 -18.67675 -18.23447 -17.65862 -17.35790 -17.11286 -16.87060 -16.35777 -16.14821 -15.83505 -15.72833 -15.55253 -15.05279 -14.59271 -14.44676 -14.10557 -13.96015 -13.84413 -13.53909 -13.42623 -13.23867 -13.01133 -12.87403 -12.79594 -12.62260 -12.47957 -12.22650 -11.96914 -11.86293 -11.65082 -11.58589 -11.40980 -11.19453 -11.03610 -10.64231 -10.56356 -9.67821 -9.17971 -8.83790 -8.76353 -7.71763 -5.11823 -0.82968 0.04351 1.28333 1.50649 1.52075 1.53044 1.58189 1.92313 2.36680 2.44540 2.53804 3.20437 3.23013 3.39340 3.47449 3.64352 3.72601 3.79073 3.87685 4.03171 4.08554 4.14976 4.17523 4.26088 4.41844 4.53307 4.59868 4.65533 4.75744 4.78138 4.83762 4.92075 4.93920 4.97211 4.97916 5.12240 5.19118 5.27796 5.37337 5.43596 5.51623 5.57667 5.60262 5.72475 5.80619 5.89888 6.11557 6.35142 6.37129 7.01196 7.02721 7.18023 7.87205 8.52945 9.31932 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014733 B = 0.003183 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.080547 B = 8793.644592 C =10062.022173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.301 1.301 6 H -0.275 1.275 7 C -0.222 4.222 8 H 0.083 0.917 9 N -0.609 5.609 10 C 0.160 3.840 11 C -0.130 4.130 12 C -0.095 4.095 13 H 0.092 0.908 14 C 0.130 3.870 15 N -0.592 5.592 16 C 0.583 3.417 17 O -0.569 6.569 18 C -0.236 4.236 19 C 0.206 3.794 20 N -0.469 5.469 21 H 0.445 0.555 22 C 0.226 3.774 23 N -0.559 5.559 24 C 0.030 3.970 25 C -0.230 4.230 26 C -0.193 4.193 27 C 0.083 3.917 28 C 0.114 3.886 29 C -0.133 4.133 30 C 0.167 3.833 31 H -0.003 1.003 32 H 0.244 0.756 33 H 0.061 0.939 34 H -0.005 1.005 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.222 0.778 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 -12.484 8.735 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.798 3.202 4 H -0.210 1.210 5 H -0.228 1.228 6 H -0.201 1.201 7 C -0.351 4.351 8 H 0.101 0.899 9 N -0.334 5.334 10 C 0.035 3.965 11 C -0.169 4.169 12 C -0.114 4.114 13 H 0.110 0.890 14 C 0.007 3.993 15 N -0.322 5.322 16 C 0.371 3.629 17 O -0.449 6.449 18 C -0.245 4.245 19 C 0.060 3.940 20 N -0.063 5.063 21 H 0.287 0.713 22 C -0.022 4.022 23 N -0.279 5.279 24 C -0.113 4.113 25 C -0.252 4.252 26 C -0.201 4.201 27 C 0.059 3.941 28 C -0.008 4.008 29 C -0.173 4.173 30 C 0.061 3.939 31 H 0.014 0.986 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.013 0.987 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.238 0.762 40 H 0.193 0.807 41 H 0.172 0.828 42 H 0.167 0.833 43 H 0.125 0.875 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.404 -12.243 9.500 16.768 hybrid contribution -0.004 1.016 -0.709 1.239 sum 6.400 -11.228 8.791 15.630 Atomic orbital electron populations 1.70062 1.06066 1.24768 1.58915 1.25449 0.96355 1.00402 1.03389 0.85299 0.77134 0.79689 0.78084 1.21049 1.22763 1.20120 1.19255 0.90900 0.83297 1.41630 0.89931 1.44738 1.02236 1.00231 1.86189 1.21671 0.84383 0.93720 0.96745 1.23164 0.97655 0.96155 0.99893 1.21847 0.95903 0.97364 0.96307 0.88985 1.21130 0.87086 1.02362 0.88687 1.47881 1.26235 1.15497 1.42592 1.17833 0.84743 0.81201 0.79118 1.90793 1.46793 1.40896 1.66391 1.19045 1.00629 0.98697 1.06154 1.22790 0.86011 0.98373 0.86873 1.40307 1.16503 1.17792 1.31654 0.71313 1.20624 0.93806 0.89243 0.98504 1.69475 1.10698 1.17444 1.30259 1.22687 1.00482 0.91552 0.96566 1.21673 0.96717 1.01660 1.05139 1.20230 0.99128 0.98398 1.02339 1.21347 0.88005 0.93521 0.91247 1.21878 0.92912 0.88024 0.97945 1.21483 0.98389 1.01934 0.95503 1.19739 0.92891 0.85209 0.96081 0.98568 0.94661 0.92103 0.98674 0.91924 0.89565 0.91924 0.89087 0.76151 0.80655 0.82837 0.83332 0.87493 0.90771 0.91149 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.97 10.16 21.65 0.22 -52.75 16 2 C -0.06 -3.31 5.49 84.86 0.47 -2.84 16 3 Si 0.97 42.66 29.55 68.60 2.03 44.69 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.22 -11.06 9.62 84.03 0.81 -10.25 16 8 H 0.08 3.92 7.09 -2.91 -0.02 3.90 16 9 N -0.61 -27.35 3.29 -677.43 -2.23 -29.58 16 10 C 0.16 7.07 5.50 86.85 0.48 7.55 16 11 C -0.13 -4.31 6.38 32.34 0.21 -4.11 16 12 C -0.09 -2.83 3.45 -10.36 -0.04 -2.86 16 13 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 14 C 0.13 3.57 5.62 86.14 0.48 4.06 16 15 N -0.59 -14.34 2.94 -827.55 -2.43 -16.77 16 16 C 0.58 14.03 7.19 86.72 0.62 14.65 16 17 O -0.57 -17.65 16.48 -4.01 -0.07 -17.72 16 18 C -0.24 -4.45 5.01 -20.18 -0.10 -4.55 16 19 C 0.21 2.54 8.42 84.47 0.71 3.25 16 20 N -0.47 -6.23 5.27 -186.73 -0.98 -7.22 16 21 H 0.45 3.00 8.91 -92.71 -0.83 2.18 16 22 C 0.23 5.09 8.64 135.83 1.17 6.27 16 23 N -0.56 -14.77 11.16 -188.98 -2.11 -16.88 16 24 C 0.03 0.72 11.69 83.88 0.98 1.70 16 25 C -0.23 -5.23 10.99 22.47 0.25 -4.99 16 26 C -0.19 -4.47 6.41 -20.11 -0.13 -4.60 16 27 C 0.08 1.71 9.88 22.94 0.23 1.94 16 28 C 0.11 2.60 5.60 86.15 0.48 3.08 16 29 C -0.13 -3.81 5.60 29.59 0.17 -3.64 16 30 C 0.17 5.90 2.69 43.81 0.12 6.02 16 31 H 0.00 -0.13 8.09 -2.38 -0.02 -0.15 16 32 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 33 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 34 H 0.00 -0.22 7.44 -2.39 -0.02 -0.24 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.45 7.94 -2.39 -0.02 2.43 16 37 H 0.06 1.88 6.80 -2.39 -0.02 1.86 16 38 H 0.09 2.46 6.99 -2.38 -0.02 2.44 16 39 H 0.22 1.19 7.09 -2.91 -0.02 1.17 16 40 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.11 1.68 4.45 -2.39 -0.01 1.67 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.07 2.18 6.82 -2.39 -0.02 2.16 16 Total: -1.00 -72.19 361.10 1.53 -70.66 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.20 Total: 14.90 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.91 Total: 10.67 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -7.54 Total: -123.20 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.07 Total: -17.72 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -72.19 1.53 -70.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036741200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.549 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds