Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00421 * 2 1 4 4 H 1.48500 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47333 * 300.00013 * 3 2 1 6 6 H 1.48504 * 109.46921 * 60.00022 * 3 2 1 7 7 C 1.38818 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99880 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.48166 * 126.40402 * 359.97438 * 9 7 2 11 11 C 1.55281 * 107.21190 * 184.82174 * 10 9 7 12 12 C 1.54259 * 101.61389 * 22.53906 * 11 10 9 13 13 H 1.08999 * 112.01271 * 79.22396 * 12 11 10 14 14 C 1.52201 * 114.70699 * 207.20703 * 12 11 10 15 15 N 1.47721 * 106.37919 * 169.56526 * 14 12 11 16 16 C 1.34777 * 119.67877 * 127.94899 * 15 14 12 17 17 O 1.21586 * 120.00471 * 354.12248 * 16 15 14 18 18 C 1.47609 * 119.99581 * 174.12911 * 16 15 14 19 19 C 1.38562 * 119.74034 * 319.14093 * 18 16 15 20 20 N 1.33772 * 122.05438 * 179.76335 * 19 18 16 21 21 H 0.96995 * 119.63127 * 180.24900 * 20 19 18 22 22 C 1.37225 * 120.73940 * 0.49998 * 20 19 18 23 23 N 1.31999 * 134.47317 * 179.77273 * 22 20 19 24 24 C 1.33407 * 110.93613 * 179.97438 * 23 22 20 25 25 C 1.35791 * 110.89021 * 0.02562 * 24 23 22 26 26 C 1.41378 * 106.45178 * 359.97438 * 25 24 23 27 27 C 1.38760 * 135.65356 * 180.02562 * 26 25 24 28 28 C 1.46588 * 120.63550 * 307.96451 * 15 14 12 29 29 C 1.53952 * 110.57737 * 47.79976 * 28 15 14 30 30 C 1.45458 * 126.40769 * 179.97438 * 9 7 2 31 31 H 1.09004 * 109.27269 * 265.55622 * 30 9 7 32 32 H 0.97007 * 119.99784 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.92005 * 304.26865 * 10 9 7 34 34 H 1.09000 * 109.91666 * 65.37006 * 10 9 7 35 35 H 1.09000 * 110.95809 * 140.72283 * 11 10 9 36 36 H 1.08998 * 110.95626 * 264.44094 * 11 10 9 37 37 H 1.08994 * 110.05840 * 50.34774 * 14 12 11 38 38 H 1.09006 * 110.05912 * 288.77903 * 14 12 11 39 39 H 1.07994 * 118.97072 * 0.02562 * 19 18 16 40 40 H 1.08000 * 124.55829 * 179.97438 * 24 23 22 41 41 H 1.08002 * 126.77380 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.73521 * 359.97438 * 27 26 25 43 43 H 1.09002 * 109.25696 * 287.52026 * 28 15 14 44 44 H 1.08997 * 109.22681 * 168.06927 * 28 15 14 45 45 H 1.09004 * 109.88575 * 189.48772 * 29 28 15 46 46 H 1.09006 * 109.94177 * 68.44784 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1470 -2.5533 -0.0017 11 6 -0.4388 -4.0735 0.1216 12 6 0.8681 -4.5899 0.7579 13 1 0.9011 -4.4042 1.8314 14 6 1.2005 -6.0408 0.4399 15 7 2.5821 -6.2648 0.9122 16 6 2.8484 -7.3046 1.7273 17 8 1.9397 -7.9891 2.1563 18 6 4.2433 -7.6123 2.0992 19 6 5.2438 -7.5287 1.1442 20 7 6.5234 -7.7927 1.4314 21 1 7.1958 -7.7196 0.7362 22 6 6.8945 -8.1708 2.6972 23 7 8.0408 -8.4911 3.2680 24 6 7.8648 -8.7904 4.5561 25 6 6.5571 -8.6789 4.9048 26 6 5.8648 -8.2773 3.7393 27 6 4.5453 -7.9933 3.4173 28 6 3.6662 -5.3668 0.5032 29 6 3.2474 -3.8962 0.6826 30 6 1.9076 -3.7211 -0.0028 31 1 1.9785 -4.0818 -1.0290 32 1 -0.4850 0.8401 0.0004 33 1 -0.5804 -2.0221 0.8456 34 1 -0.5636 -2.1695 -0.9330 35 1 -1.2919 -4.2549 0.7752 36 1 -0.5994 -4.5205 -0.8595 37 1 1.1404 -6.2111 -0.6350 38 1 0.5136 -6.7053 0.9642 39 1 4.9830 -7.2373 0.1375 40 1 8.6558 -9.0830 5.2307 41 1 6.1303 -8.8604 5.8801 42 1 3.7676 -8.0637 4.1633 43 1 3.9061 -5.5469 -0.5447 44 1 4.5472 -5.5667 1.1131 45 1 3.9874 -3.2412 0.2227 46 1 3.1545 -3.6629 1.7434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036741202.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = 95.618302 kcal Electronic energy + Delta-G solvation = -29523.877122 eV Core-core repulsion = 25608.829761 eV Total energy + Delta-G solvation = -3915.047362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85827 -40.39323 -38.61833 -38.05494 -35.56866 -34.17893 -32.78628 -31.71132 -30.57551 -29.31277 -29.07965 -28.06188 -25.30636 -24.49670 -24.25279 -22.75761 -22.55051 -21.50991 -20.20229 -19.91584 -19.17466 -18.02534 -17.80950 -16.87604 -16.70600 -16.24330 -16.01308 -15.44768 -15.26442 -14.94199 -14.83654 -14.42268 -14.01836 -13.85490 -13.50680 -13.24136 -13.14325 -12.88336 -12.66664 -12.57379 -12.45263 -12.07659 -11.74165 -11.59192 -11.50175 -11.06857 -10.93654 -10.87982 -10.83118 -10.28190 -10.16184 -10.02279 -9.91330 -9.71909 -9.71466 -9.57395 -8.73309 -8.69768 -8.39239 -8.02310 -6.91724 -5.78989 -3.12591 -0.09956 0.76308 1.95097 2.52376 2.81996 3.21217 3.28028 3.34133 3.39255 3.42203 3.80040 4.07501 4.12099 4.41766 4.45636 4.76220 4.80472 4.85580 4.97165 5.05499 5.21454 5.29300 5.35745 5.45962 5.48990 5.55995 5.64399 5.69287 5.71087 5.76435 5.90493 6.01130 6.04766 6.07753 6.11570 6.21084 6.24822 6.36374 6.51836 6.54548 6.56777 6.69995 6.87778 6.95865 7.24810 7.48089 7.54289 7.74459 7.82753 7.97883 8.16888 9.11676 9.75406 10.42783 11.33441 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.002842 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.689010 B = 9851.284493 C =11029.551013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.126 4.126 13 H 0.081 0.919 14 C 0.127 3.873 15 N -0.602 5.602 16 C 0.572 3.428 17 O -0.534 6.534 18 C -0.225 4.225 19 C 0.177 3.823 20 N -0.488 5.488 21 H 0.428 0.572 22 C 0.243 3.757 23 N -0.531 5.531 24 C 0.052 3.948 25 C -0.222 4.222 26 C -0.168 4.168 27 C 0.080 3.920 28 C 0.101 3.899 29 C -0.129 4.129 30 C 0.168 3.832 31 H 0.020 0.980 32 H 0.252 0.748 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.186 0.814 40 H 0.160 0.840 41 H 0.139 0.861 42 H 0.146 0.854 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.415 -16.506 1.200 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.051 3.949 11 C -0.174 4.174 12 C -0.146 4.146 13 H 0.099 0.901 14 C 0.005 3.995 15 N -0.335 5.335 16 C 0.359 3.641 17 O -0.411 6.411 18 C -0.235 4.235 19 C 0.033 3.967 20 N -0.080 5.080 21 H 0.266 0.734 22 C -0.006 4.006 23 N -0.250 5.250 24 C -0.091 4.091 25 C -0.244 4.244 26 C -0.177 4.177 27 C 0.056 3.944 28 C -0.022 4.022 29 C -0.169 4.169 30 C 0.059 3.941 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.203 0.797 40 H 0.177 0.823 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.922 -16.661 1.040 19.419 hybrid contribution 0.028 1.140 0.125 1.147 sum 9.950 -15.521 1.165 18.473 Atomic orbital electron populations 1.69945 1.04911 1.25014 1.56826 1.24797 0.95677 0.97678 1.02190 0.86090 0.78692 0.83936 0.77292 1.20536 1.21756 1.21749 1.19013 0.90331 0.82279 1.43961 0.90352 1.44199 1.01656 0.99409 1.86573 1.21536 0.83874 0.88372 1.01072 1.22785 0.95683 0.99594 0.99297 1.22754 0.97924 0.93127 1.00803 0.90104 1.21689 0.81018 0.97521 0.99226 1.48248 1.10259 1.26879 1.48064 1.17745 0.87190 0.80667 0.78476 1.90802 1.46196 1.50521 1.53622 1.19308 0.93893 1.15369 0.94962 1.22458 0.81693 0.91719 1.00821 1.40265 1.08527 1.49238 1.09989 0.73405 1.20453 0.93491 1.02254 0.84401 1.69522 1.23969 1.22504 1.09019 1.22341 0.95796 0.99991 0.90955 1.21423 0.94669 1.10862 0.97450 1.20102 0.92546 1.09521 0.95487 1.21353 0.95311 0.83630 0.94102 1.22104 0.89209 0.91209 0.99652 1.21885 0.99639 0.92971 1.02364 1.20627 0.90979 0.87397 0.95084 0.96319 0.93739 0.92718 0.94307 0.91937 0.92255 0.90979 0.88902 0.79716 0.82288 0.84275 0.83594 0.91317 0.90292 0.90374 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.12 10.43 55.49 0.58 -25.54 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -5.91 9.88 -15.06 -0.15 -6.06 16 8 H 0.08 1.94 7.21 -52.49 -0.38 1.56 16 9 N -0.59 -13.93 3.35 -163.10 -0.55 -14.48 16 10 C 0.18 4.01 5.44 -1.92 -0.01 4.00 16 11 C -0.13 -2.31 6.57 -24.86 -0.16 -2.47 16 12 C -0.13 -2.02 2.87 -89.11 -0.26 -2.28 16 13 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 14 C 0.13 1.66 5.97 -3.78 -0.02 1.63 16 15 N -0.60 -7.08 3.00 -173.72 -0.52 -7.61 16 16 C 0.57 7.07 7.26 -12.44 -0.09 6.98 16 17 O -0.53 -8.42 16.28 5.29 0.09 -8.33 16 18 C -0.23 -2.25 5.01 -105.11 -0.53 -2.78 16 19 C 0.18 1.19 8.50 -16.59 -0.14 1.04 16 20 N -0.49 -3.46 5.27 -10.37 -0.05 -3.52 16 21 H 0.43 1.64 8.91 -40.82 -0.36 1.27 16 22 C 0.24 2.78 8.64 -153.90 -1.33 1.45 16 23 N -0.53 -6.97 11.16 -11.08 -0.12 -7.10 16 24 C 0.05 0.62 11.69 -17.74 -0.21 0.42 16 25 C -0.22 -2.56 10.99 -39.26 -0.43 -2.99 16 26 C -0.17 -2.00 6.41 -105.01 -0.67 -2.68 16 27 C 0.08 0.88 9.77 -38.54 -0.38 0.50 16 28 C 0.10 1.03 4.71 -3.50 -0.02 1.01 16 29 C -0.13 -1.91 5.48 -26.99 -0.15 -2.06 16 30 C 0.17 3.00 2.58 -67.99 -0.18 2.83 16 31 H 0.02 0.35 7.90 -51.93 -0.41 -0.06 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.05 1.41 7.21 -51.93 -0.37 1.04 16 34 H 0.04 0.98 7.76 -51.93 -0.40 0.57 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 37 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 38 H 0.09 1.27 6.98 -51.93 -0.36 0.91 16 39 H 0.19 0.62 6.35 -52.49 -0.33 0.28 16 40 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 44 H 0.08 0.65 4.98 -51.93 -0.26 0.39 16 45 H 0.08 1.17 7.62 -51.93 -0.40 0.77 16 46 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -34.56 363.44 -11.14 -45.69 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.20 Total: 0.85 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -4.81 Total: -1.73 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -0.67 Total: -58.24 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.56 -11.14 -45.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036741202.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.311 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds