Wall clock time and date at job start Sat Apr 11 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00193 * 2 1 4 4 H 1.48492 * 109.47196 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46834 * 239.99702 * 3 2 1 6 6 H 1.48503 * 109.46809 * 120.00238 * 3 2 1 7 7 C 1.38819 * 119.99457 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99421 * 146.55556 * 7 2 1 9 9 N 1.36931 * 120.00173 * 326.55754 * 7 2 1 10 10 C 1.47772 * 125.96261 * 351.25539 * 9 7 2 11 11 C 1.55097 * 104.91102 * 201.57633 * 10 9 7 12 12 C 1.56113 * 101.08575 * 322.93635 * 11 10 9 13 13 H 1.09007 * 112.18729 * 157.73197 * 12 11 10 14 14 C 1.53106 * 106.64911 * 281.14687 * 12 11 10 15 15 N 1.46168 * 109.63018 * 159.75990 * 14 12 11 16 16 C 1.34781 * 120.95802 * 121.18913 * 15 14 12 17 17 O 1.21587 * 120.00026 * 355.06096 * 16 15 14 18 18 C 1.47576 * 120.00185 * 175.05929 * 16 15 14 19 19 C 1.40084 * 120.35949 * 146.46027 * 18 16 15 20 20 N 1.31171 * 121.11610 * 179.69545 * 19 18 16 21 21 C 1.33360 * 121.67486 * 0.59542 * 20 19 18 22 22 C 1.41855 * 133.16193 * 179.69765 * 21 20 19 23 23 C 1.34451 * 107.95544 * 179.97438 * 22 21 20 24 24 N 1.36537 * 109.72034 * 0.02562 * 23 22 21 25 25 H 0.96998 * 125.60349 * 179.97438 * 24 23 22 26 26 C 1.37852 * 108.80172 * 359.97438 * 24 23 22 27 27 C 1.38733 * 133.57189 * 180.02562 * 26 24 23 28 28 C 1.46527 * 118.06577 * 301.50430 * 15 14 12 29 29 C 1.51783 * 110.12977 * 53.46720 * 28 15 14 30 30 C 1.46259 * 125.95849 * 170.94385 * 9 7 2 31 31 H 1.08999 * 105.49941 * 70.60124 * 30 9 7 32 32 H 0.97001 * 120.00789 * 177.93340 * 1 2 3 33 33 H 1.08996 * 110.35699 * 320.43796 * 10 9 7 34 34 H 1.09001 * 110.34957 * 82.61618 * 10 9 7 35 35 H 1.09006 * 111.09848 * 80.89482 * 11 10 9 36 36 H 1.09005 * 111.09811 * 204.98600 * 11 10 9 37 37 H 1.09000 * 109.52696 * 279.95081 * 14 12 11 38 38 H 1.09000 * 109.52367 * 40.15768 * 14 12 11 39 39 H 1.07995 * 119.43958 * 359.97438 * 19 18 16 40 40 H 1.07997 * 126.02114 * 0.02650 * 22 21 20 41 41 H 1.08003 * 125.14375 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.91135 * 0.02562 * 27 26 24 43 43 H 1.09002 * 109.35735 * 293.26356 * 28 15 14 44 44 H 1.09000 * 109.35813 * 173.66686 * 28 15 14 45 45 H 1.09001 * 108.36519 * 196.93423 * 29 28 15 46 46 H 1.09004 * 108.36543 * 79.82825 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6962 -1.2125 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 2.9561 -1.2799 -0.5149 9 7 1.4955 -2.2896 0.6545 10 6 0.3171 -2.2884 1.5462 11 6 0.4845 -3.5514 2.4307 12 6 1.0909 -4.5588 1.4037 13 1 1.6347 -5.3674 1.8923 14 6 -0.0736 -5.0714 0.5521 15 7 0.4394 -5.6203 -0.7017 16 6 0.2066 -6.9031 -1.0436 17 8 -0.3601 -7.6463 -0.2659 18 6 0.6396 -7.4057 -2.3618 19 6 1.0648 -8.7323 -2.5091 20 7 1.4471 -9.1961 -3.6749 21 6 1.4597 -8.4274 -4.7646 22 6 1.8223 -8.6645 -6.1153 23 6 1.6375 -7.5226 -6.8007 24 7 1.1721 -6.5516 -5.9612 25 1 0.9612 -5.6394 -6.2148 26 6 1.0512 -7.0805 -4.6939 27 6 0.6350 -6.5610 -3.4767 28 6 1.2199 -4.7375 -1.5726 29 6 2.3620 -4.1114 -0.7932 30 6 2.0124 -3.6562 0.5874 31 1 2.9576 -3.6371 1.1299 32 1 -0.4851 -0.8394 -0.0303 33 1 0.3104 -1.3908 2.1645 34 1 -0.6007 -2.3520 0.9616 35 1 1.1755 -3.3657 3.2531 36 1 -0.4789 -3.9013 2.8014 37 1 -0.6095 -5.8482 1.0975 38 1 -0.7516 -4.2477 0.3286 39 1 1.0737 -9.3854 -1.6490 40 1 2.1824 -9.5980 -6.5217 41 1 1.8291 -7.3928 -7.8556 42 1 0.3159 -5.5327 -3.3923 43 1 0.5738 -3.9506 -1.9618 44 1 1.6237 -5.3151 -2.4041 45 1 2.7309 -3.2530 -1.3546 46 1 3.1686 -4.8410 -0.7203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036748095.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:11 Heat of formation + Delta-G solvation = 83.315565 kcal Electronic energy + Delta-G solvation = -30047.345029 eV Core-core repulsion = 26131.764181 eV Total energy + Delta-G solvation = -3915.580848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.03757 -40.39913 -38.67795 -37.52863 -35.54214 -33.55719 -32.72273 -31.95387 -30.48113 -29.97709 -29.13906 -27.92590 -25.60380 -24.26713 -24.12168 -23.03177 -22.68857 -21.15529 -20.30584 -20.11398 -18.75128 -18.18711 -17.62699 -17.03785 -16.46155 -16.06287 -15.89545 -15.35059 -15.24530 -14.80394 -14.38322 -14.27864 -13.93280 -13.78868 -13.53005 -13.33861 -13.14317 -12.96723 -12.79757 -12.69284 -12.56368 -12.53029 -11.91418 -11.56196 -11.29980 -11.04109 -10.68922 -10.56367 -10.33412 -10.32833 -10.25671 -10.08134 -10.02680 -9.97819 -9.60264 -9.40796 -8.72187 -8.45827 -8.38394 -8.28826 -6.99041 -6.23793 -3.12845 0.41024 1.10797 2.20296 2.62867 2.86074 3.12005 3.43698 3.50609 3.67009 3.77134 4.05381 4.32754 4.48839 4.51426 4.66411 4.77633 4.92996 4.99484 5.00977 5.10483 5.17032 5.24734 5.30921 5.35702 5.41297 5.58702 5.61946 5.68338 5.75231 5.80409 5.88907 6.04533 6.07665 6.10591 6.13122 6.17766 6.27743 6.39821 6.47258 6.57039 6.64902 6.79675 6.82578 6.96802 6.98931 7.03129 7.51030 7.72540 7.83956 8.18956 8.41662 8.94547 9.76368 10.34582 11.13832 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.003356 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.007512 B = 8341.737058 C = 9858.637459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.022 4.022 3 Si 1.060 2.940 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.341 4.341 8 H 0.068 0.932 9 N -0.591 5.591 10 C 0.142 3.858 11 C -0.132 4.132 12 C -0.106 4.106 13 H 0.082 0.918 14 C 0.120 3.880 15 N -0.594 5.594 16 C 0.567 3.433 17 O -0.540 6.540 18 C -0.167 4.167 19 C 0.153 3.847 20 N -0.457 5.457 21 C 0.112 3.888 22 C -0.201 4.201 23 C 0.080 3.920 24 N -0.581 5.581 25 H 0.423 0.577 26 C 0.026 3.974 27 C -0.045 4.045 28 C 0.101 3.899 29 C -0.135 4.135 30 C 0.172 3.828 31 H 0.011 0.989 32 H 0.268 0.732 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.167 0.833 40 H 0.153 0.847 41 H 0.181 0.819 42 H 0.147 0.853 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -13.323 -10.521 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.224 4.224 3 Si 0.890 3.110 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.469 4.469 8 H 0.085 0.915 9 N -0.318 5.318 10 C 0.016 3.984 11 C -0.171 4.171 12 C -0.126 4.126 13 H 0.100 0.900 14 C -0.002 4.002 15 N -0.324 5.324 16 C 0.355 3.645 17 O -0.419 6.419 18 C -0.174 4.174 19 C -0.017 4.017 20 N -0.165 5.165 21 C -0.019 4.019 22 C -0.227 4.227 23 C -0.051 4.051 24 N -0.184 5.184 25 H 0.261 0.739 26 C -0.083 4.083 27 C -0.073 4.073 28 C -0.021 4.021 29 C -0.175 4.175 30 C 0.065 3.935 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.185 0.815 40 H 0.171 0.829 41 H 0.198 0.802 42 H 0.165 0.835 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.985 -12.681 -10.352 16.490 hybrid contribution -0.021 -0.143 -0.251 0.289 sum 1.964 -12.824 -10.603 16.755 Atomic orbital electron populations 1.70836 1.06758 1.30164 1.47351 1.25617 0.96204 1.00803 0.99776 0.83576 0.75009 0.76228 0.76199 1.21204 1.22154 1.22171 1.19593 1.03839 0.88922 1.34498 0.91451 1.44700 1.32831 1.02065 1.52172 1.21642 0.90320 0.95070 0.91347 1.23083 1.00075 0.96493 0.97459 1.22330 0.96476 0.97289 0.96470 0.90005 1.21608 0.96006 0.98684 0.83892 1.47726 1.52530 1.10173 1.22018 1.17926 0.79267 0.81480 0.85868 1.90770 1.43313 1.55737 1.52062 1.20621 1.06660 0.96276 0.93841 1.22711 0.92595 0.91672 0.94728 1.67276 1.14934 1.36505 0.97778 1.19217 0.99817 0.88915 0.93950 1.20573 1.11621 0.99656 0.90831 1.22066 0.98883 0.87590 0.96561 1.41776 1.56989 1.13262 1.06329 0.73850 1.18986 1.06732 0.95661 0.86959 1.20977 0.97180 1.00047 0.89116 1.21863 0.94004 0.93059 0.93185 1.21244 0.96747 1.00504 0.99010 1.19452 0.95569 0.85919 0.92586 0.97188 0.92001 0.93013 0.95829 0.91387 0.91466 0.89309 0.90623 0.81544 0.82892 0.80200 0.83505 0.91038 0.89620 0.89734 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.16 12.94 55.49 0.72 -25.44 16 2 C -0.02 -0.59 5.02 -17.43 -0.09 -0.67 16 3 Si 1.06 24.45 30.03 -169.99 -5.10 19.35 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.34 -8.98 9.17 -15.06 -0.14 -9.12 16 8 H 0.07 1.77 7.49 -52.48 -0.39 1.38 16 9 N -0.59 -13.89 3.27 -165.71 -0.54 -14.43 16 10 C 0.14 3.11 4.83 -2.24 -0.01 3.10 16 11 C -0.13 -2.29 6.47 -23.95 -0.15 -2.44 16 12 C -0.11 -1.80 3.71 -89.08 -0.33 -2.13 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 14 C 0.12 1.98 5.49 -4.17 -0.02 1.96 16 15 N -0.59 -9.37 2.94 -175.81 -0.52 -9.89 16 16 C 0.57 9.04 7.42 -12.45 -0.09 8.95 16 17 O -0.54 -9.94 16.22 5.29 0.09 -9.85 16 18 C -0.17 -2.33 5.39 -104.79 -0.56 -2.90 16 19 C 0.15 2.11 10.75 -17.14 -0.18 1.92 16 20 N -0.46 -6.45 10.40 -10.71 -0.11 -6.56 16 21 C 0.11 1.42 7.32 -84.80 -0.62 0.80 16 22 C -0.20 -1.88 10.84 -39.54 -0.43 -2.31 16 23 C 0.08 0.53 11.82 -16.79 -0.20 0.33 16 24 N -0.58 -4.51 6.14 -10.66 -0.07 -4.58 16 25 H 0.42 2.12 8.96 -40.82 -0.37 1.75 16 26 C 0.03 0.29 7.27 -83.96 -0.61 -0.32 16 27 C -0.04 -0.54 7.50 -38.79 -0.29 -0.83 16 28 C 0.10 1.54 4.86 -4.64 -0.02 1.51 16 29 C -0.14 -2.34 5.60 -29.07 -0.16 -2.50 16 30 C 0.17 3.37 2.63 -69.96 -0.18 3.19 16 31 H 0.01 0.22 8.06 -51.93 -0.42 -0.20 16 32 H 0.27 7.68 6.01 -40.82 -0.25 7.44 16 33 H 0.05 1.27 7.81 -51.93 -0.41 0.86 16 34 H 0.02 0.55 5.84 -51.93 -0.30 0.25 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.07 1.01 7.98 -51.93 -0.41 0.60 16 37 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 38 H 0.08 1.34 6.49 -51.93 -0.34 1.00 16 39 H 0.17 2.10 7.97 -52.49 -0.42 1.68 16 40 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.18 0.42 8.06 -52.48 -0.42 0.00 16 42 H 0.15 1.63 5.87 -52.49 -0.31 1.32 16 43 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 44 H 0.09 1.12 4.25 -51.93 -0.22 0.90 16 45 H 0.08 1.61 6.80 -51.93 -0.35 1.26 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -33.24 358.48 -10.11 -43.35 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.87 Total: 4.13 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -4.10 Total: -1.48 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.52 Total: -60.89 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.10 Total: 19.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.24 -10.11 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036748095.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.666 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds