Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99976 * 2 1 4 4 H 1.48499 * 109.46995 * 269.99967 * 3 2 1 5 5 H 1.48503 * 109.46972 * 29.99498 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99789 * 3 2 1 7 7 C 1.38809 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00319 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.48157 * 126.40350 * 359.97438 * 9 7 2 11 11 C 1.55289 * 107.04441 * 184.92055 * 10 9 7 12 12 C 1.53742 * 101.84178 * 22.47641 * 11 10 9 13 13 H 1.09010 * 111.29883 * 79.84078 * 12 11 10 14 14 C 1.52240 * 114.75118 * 207.23385 * 12 11 10 15 15 N 1.47723 * 106.35558 * 169.60728 * 14 12 11 16 16 C 1.34771 * 119.68385 * 127.94993 * 15 14 12 17 17 O 1.21596 * 120.00047 * 355.01993 * 16 15 14 18 18 C 1.47585 * 119.99861 * 175.29847 * 16 15 14 19 19 C 1.40083 * 120.36007 * 328.47350 * 18 16 15 20 20 N 1.31155 * 121.12369 * 180.02562 * 19 18 16 21 21 C 1.33370 * 121.67481 * 359.97438 * 20 19 18 22 22 C 1.41855 * 133.16829 * 180.02562 * 21 20 19 23 23 C 1.34456 * 107.95593 * 179.97438 * 22 21 20 24 24 N 1.36535 * 109.71550 * 359.97438 * 23 22 21 25 25 H 0.97000 * 125.59713 * 179.97438 * 24 23 22 26 26 C 1.37852 * 108.80526 * 0.02562 * 24 23 22 27 27 C 1.38729 * 133.56659 * 180.29813 * 26 24 23 28 28 C 1.46597 * 120.62686 * 308.21829 * 15 14 12 29 29 C 1.53534 * 110.81911 * 47.46097 * 28 15 14 30 30 C 1.45467 * 126.40421 * 179.97438 * 9 7 2 31 31 H 1.08995 * 109.27189 * 266.21511 * 30 9 7 32 32 H 0.96994 * 120.00282 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.91983 * 65.56732 * 10 9 7 34 34 H 1.09006 * 109.91699 * 304.26959 * 10 9 7 35 35 H 1.09002 * 110.95102 * 264.34268 * 11 10 9 36 36 H 1.08997 * 110.95398 * 140.61487 * 11 10 9 37 37 H 1.08999 * 110.06382 * 50.39837 * 14 12 11 38 38 H 1.08999 * 110.07032 * 288.81996 * 14 12 11 39 39 H 1.08000 * 119.43547 * 359.97314 * 19 18 16 40 40 H 1.08000 * 126.01950 * 359.95120 * 22 21 20 41 41 H 1.07997 * 125.14192 * 180.02562 * 23 22 21 42 42 H 1.08006 * 120.91115 * 359.89813 * 27 26 24 43 43 H 1.09000 * 109.25206 * 167.83109 * 28 15 14 44 44 H 1.09003 * 109.25578 * 287.25730 * 28 15 14 45 45 H 1.09002 * 109.96309 * 189.66671 * 29 28 15 46 46 H 1.08997 * 109.78283 * 68.66884 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1468 -2.5534 0.0005 11 6 -0.4340 -4.0742 0.1279 12 6 0.8684 -4.5893 0.7618 13 1 0.8851 -4.4064 1.8364 14 6 1.2010 -6.0407 0.4450 15 7 2.5823 -6.2639 0.9185 16 6 2.8485 -7.3029 1.7346 17 8 1.9411 -7.9972 2.1505 18 6 4.2407 -7.5941 2.1283 19 6 5.2977 -7.3125 1.2532 20 7 6.5404 -7.5657 1.5874 21 6 6.8529 -8.0993 2.7691 22 6 8.0827 -8.4664 3.3734 23 6 7.8129 -8.9642 4.5930 24 7 6.4657 -8.9388 4.8132 25 1 6.0194 -9.2440 5.6185 26 6 5.8439 -8.4091 3.7027 27 6 4.5196 -8.1486 3.3816 28 6 3.6653 -5.3626 0.5137 29 6 3.2475 -3.8953 0.6867 30 6 1.9079 -3.7211 0.0005 31 1 1.9897 -4.0780 -1.0261 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5631 -2.1736 -0.9325 34 1 -0.5802 -2.0213 0.8475 35 1 -0.5951 -4.5238 -0.8519 36 1 -1.2854 -4.2564 0.7836 37 1 1.1416 -6.2119 -0.6298 38 1 0.5139 -6.7049 0.9693 39 1 5.0855 -6.8804 0.2864 40 1 9.0629 -8.3643 2.9316 41 1 8.5505 -9.3283 5.2928 42 1 3.7254 -8.3719 4.0787 43 1 4.5449 -5.5596 1.1266 44 1 3.9101 -5.5421 -0.5332 45 1 3.9877 -3.2409 0.2263 46 1 3.1542 -3.6609 1.7471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036748096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 87.793576 kcal Electronic energy + Delta-G solvation = -29507.521211 eV Core-core repulsion = 25592.134543 eV Total energy + Delta-G solvation = -3915.386667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.07331 -40.42019 -38.50264 -37.63457 -35.46658 -33.23761 -32.68964 -31.60204 -30.56502 -30.36769 -29.21641 -27.94437 -25.23861 -24.37964 -23.99026 -22.68662 -22.31584 -21.19732 -20.19699 -19.94710 -19.27245 -18.56833 -17.53964 -16.62025 -16.43342 -15.99401 -15.69742 -15.30329 -15.02533 -14.89224 -14.53369 -14.21280 -13.92654 -13.71848 -13.46136 -13.24847 -13.14241 -12.98421 -12.93602 -12.75315 -12.43561 -12.20867 -11.63493 -11.47257 -11.34394 -10.84480 -10.77599 -10.71399 -10.63375 -10.26576 -10.10251 -10.02927 -9.85442 -9.62403 -9.48165 -9.42471 -8.69792 -8.62013 -8.59924 -8.39938 -6.83377 -5.71267 -3.04413 0.39264 1.02986 2.16406 2.52093 2.86303 3.05333 3.40132 3.45242 3.46993 3.70711 3.97878 4.29365 4.47682 4.49829 4.60193 4.71072 4.88801 4.94474 5.02744 5.11777 5.24703 5.33693 5.35030 5.52406 5.56751 5.60369 5.61327 5.75893 5.80928 5.89348 6.01015 6.04001 6.10252 6.15632 6.18328 6.23811 6.36155 6.48513 6.56279 6.61735 6.64526 6.82624 6.97110 7.06951 7.41753 7.55927 7.62031 7.76123 7.81487 8.14012 8.24752 9.19782 9.83400 10.51322 11.41311 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.002822 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.959410 B = 9919.481046 C =11127.559704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.079 0.921 14 C 0.126 3.874 15 N -0.597 5.597 16 C 0.565 3.435 17 O -0.544 6.544 18 C -0.171 4.171 19 C 0.124 3.876 20 N -0.455 5.455 21 C 0.111 3.889 22 C -0.198 4.198 23 C 0.077 3.923 24 N -0.581 5.581 25 H 0.422 0.578 26 C 0.025 3.975 27 C -0.017 4.017 28 C 0.095 3.905 29 C -0.130 4.130 30 C 0.168 3.832 31 H 0.021 0.979 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.174 0.826 40 H 0.154 0.846 41 H 0.181 0.819 42 H 0.141 0.859 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.316 -19.174 7.746 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.144 4.144 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.329 5.329 16 C 0.353 3.647 17 O -0.422 6.422 18 C -0.178 4.178 19 C -0.045 4.045 20 N -0.162 5.162 21 C -0.019 4.019 22 C -0.224 4.224 23 C -0.054 4.054 24 N -0.184 5.184 25 H 0.260 0.740 26 C -0.084 4.084 27 C -0.046 4.046 28 C -0.028 4.028 29 C -0.169 4.169 30 C 0.059 3.941 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.190 0.810 40 H 0.172 0.828 41 H 0.198 0.802 42 H 0.159 0.841 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.473 -19.142 7.520 24.053 hybrid contribution -0.403 0.724 0.996 1.295 sum 12.071 -18.417 8.515 23.609 Atomic orbital electron populations 1.69937 1.04895 1.25027 1.57071 1.24789 0.95673 0.97634 1.02363 0.86156 0.78603 0.83677 0.77563 1.21624 1.21761 1.20701 1.18999 0.90367 0.82302 1.43654 0.90348 1.44205 1.01653 0.99457 1.86580 1.21534 0.83936 0.88300 1.00963 1.22717 0.95744 0.99678 0.99332 1.22635 0.97912 0.93225 1.00671 0.90230 1.21685 0.81195 0.97349 0.99274 1.48175 1.10238 1.26733 1.47755 1.17966 0.87574 0.80752 0.78455 1.90764 1.46577 1.50040 1.54852 1.20599 0.95072 1.05747 0.96354 1.23291 0.86330 0.95091 0.99808 1.67264 1.20719 1.11836 1.16424 1.19207 0.93579 0.99060 0.90088 1.20598 0.97434 1.09238 0.95114 1.22058 0.84040 1.01124 0.98138 1.41743 1.06515 1.54436 1.15691 0.74016 1.18977 0.94694 1.04458 0.90309 1.20465 0.93190 0.95049 0.95924 1.22335 0.89497 0.90672 1.00341 1.21839 0.99577 0.93380 1.02143 1.20634 0.91036 0.87236 0.95158 0.96141 0.93773 0.94337 0.92757 0.92277 0.92064 0.90976 0.89064 0.80952 0.82810 0.80216 0.84075 0.89045 0.90994 0.90269 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.44 55.49 0.58 -26.30 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.07 9.88 -15.06 -0.15 -6.22 16 8 H 0.08 2.03 7.21 -52.49 -0.38 1.65 16 9 N -0.59 -14.65 3.35 -163.09 -0.55 -15.20 16 10 C 0.18 4.22 5.45 -1.92 -0.01 4.21 16 11 C -0.14 -2.49 6.54 -25.13 -0.16 -2.65 16 12 C -0.12 -2.18 2.85 -89.37 -0.26 -2.43 16 13 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 14 C 0.13 1.89 5.97 -3.76 -0.02 1.87 16 15 N -0.60 -8.60 3.00 -173.95 -0.52 -9.12 16 16 C 0.56 8.45 7.41 -12.45 -0.09 8.36 16 17 O -0.54 -9.58 16.15 5.28 0.09 -9.49 16 18 C -0.17 -2.23 5.36 -104.79 -0.56 -2.79 16 19 C 0.12 1.53 8.52 -17.15 -0.15 1.39 16 20 N -0.45 -6.00 10.40 -10.71 -0.11 -6.11 16 21 C 0.11 1.33 7.32 -84.80 -0.62 0.71 16 22 C -0.20 -1.73 10.84 -39.54 -0.43 -2.16 16 23 C 0.08 0.45 11.82 -16.79 -0.20 0.25 16 24 N -0.58 -3.95 6.14 -10.67 -0.07 -4.01 16 25 H 0.42 1.54 8.96 -40.82 -0.37 1.17 16 26 C 0.02 0.26 7.27 -83.96 -0.61 -0.35 16 27 C -0.02 -0.20 9.74 -38.79 -0.38 -0.58 16 28 C 0.09 1.25 4.56 -3.71 -0.02 1.23 16 29 C -0.13 -2.18 5.46 -27.20 -0.15 -2.33 16 30 C 0.17 3.28 2.57 -67.98 -0.17 3.10 16 31 H 0.02 0.42 7.92 -51.93 -0.41 0.01 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.04 1.01 7.77 -51.93 -0.40 0.60 16 34 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 35 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.09 1.40 6.98 -51.93 -0.36 1.04 16 39 H 0.17 1.84 5.40 -52.49 -0.28 1.55 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.18 0.28 8.06 -52.49 -0.42 -0.15 16 42 H 0.14 1.50 8.00 -52.48 -0.42 1.08 16 43 H 0.09 1.11 4.40 -51.93 -0.23 0.88 16 44 H 0.07 0.83 7.74 -51.93 -0.40 0.42 16 45 H 0.08 1.34 7.62 -51.93 -0.40 0.94 16 46 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 361.66 15.07 5.45 5.45 Total: -1.00 -34.31 361.66 -10.34 -44.65 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.11 Total: 1.96 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -4.07 Total: 1.27 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.67 Total: -60.73 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.31 -10.34 -44.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036748096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.444 kcal (2) G-P(sol) polarization free energy of solvation -34.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds