Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99745 * 2 1 4 4 H 1.48498 * 109.47113 * 269.99897 * 3 2 1 5 5 H 1.48500 * 109.47164 * 30.00314 * 3 2 1 6 6 H 1.48505 * 109.47019 * 150.00078 * 3 2 1 7 7 C 1.38807 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.48155 * 126.40737 * 359.97438 * 9 7 2 11 11 C 1.55290 * 107.04263 * 175.09305 * 10 9 7 12 12 C 1.53741 * 101.84232 * 337.52004 * 11 10 9 13 13 H 1.08994 * 111.97905 * 280.76367 * 12 11 10 14 14 C 1.52237 * 114.74715 * 152.76680 * 12 11 10 15 15 N 1.47721 * 106.36236 * 190.40738 * 14 12 11 16 16 C 1.34776 * 119.68863 * 232.05971 * 15 14 12 17 17 O 1.21592 * 119.99752 * 356.26698 * 16 15 14 18 18 C 1.47576 * 120.00214 * 176.27107 * 16 15 14 19 19 C 1.40091 * 120.35807 * 229.55629 * 18 16 15 20 20 N 1.31158 * 121.11906 * 180.02562 * 19 18 16 21 21 C 1.33365 * 121.67931 * 359.97438 * 20 19 18 22 22 C 1.41854 * 133.16831 * 180.02562 * 21 20 19 23 23 C 1.34456 * 107.95793 * 179.97438 * 22 21 20 24 24 N 1.36550 * 109.71438 * 359.97438 * 23 22 21 25 25 H 0.96999 * 125.59455 * 180.02562 * 24 23 22 26 26 C 1.37856 * 108.80224 * 0.02562 * 24 23 22 27 27 C 1.38729 * 133.56496 * 180.36089 * 26 24 23 28 28 C 1.47146 * 120.93043 * 51.05068 * 15 14 12 29 29 C 1.53956 * 110.88172 * 313.55997 * 28 15 14 30 30 C 1.45465 * 126.40240 * 180.02562 * 9 7 2 31 31 H 1.09001 * 109.27313 * 93.77753 * 30 9 7 32 32 H 0.97000 * 120.00005 * 0.02562 * 1 2 3 33 33 H 1.08993 * 109.91932 * 294.44529 * 10 9 7 34 34 H 1.09002 * 109.92103 * 55.74980 * 10 9 7 35 35 H 1.09000 * 110.95666 * 219.37861 * 11 10 9 36 36 H 1.09007 * 110.95284 * 95.65447 * 11 10 9 37 37 H 1.08997 * 110.07128 * 309.62103 * 14 12 11 38 38 H 1.09001 * 110.07172 * 71.19776 * 14 12 11 39 39 H 1.07993 * 119.43603 * 359.97397 * 19 18 16 40 40 H 1.07998 * 126.02063 * 359.95665 * 22 21 20 41 41 H 1.07994 * 125.14490 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.90998 * 359.87125 * 27 26 24 43 43 H 1.09002 * 109.82585 * 192.71348 * 28 15 14 44 44 H 1.08995 * 108.37989 * 73.47100 * 28 15 14 45 45 H 1.09008 * 109.87933 * 290.69155 * 29 28 15 46 46 H 1.08999 * 109.94635 * 169.64926 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5533 0.0005 11 6 -0.4341 -4.0741 -0.1269 12 6 0.8679 -4.5890 -0.7620 13 1 0.9000 -4.4020 -1.8353 14 6 1.2006 -6.0405 -0.4458 15 7 2.5817 -6.2637 -0.9199 16 6 2.8474 -7.3024 -1.7366 17 8 1.9668 -8.0896 -2.0252 18 6 4.2072 -7.4844 -2.2805 19 6 4.3986 -7.6979 -3.6518 20 7 5.6002 -7.8620 -4.1510 21 6 6.6886 -7.8328 -3.3809 22 6 8.0735 -7.9771 -3.6520 23 6 8.7382 -7.8583 -2.4892 24 7 7.8526 -7.6427 -1.4724 25 1 8.0840 -7.5238 -0.5380 26 6 6.5759 -7.6218 -1.9921 27 6 5.3193 -7.4386 -1.4336 28 6 3.6711 -5.3542 -0.5311 29 6 3.2442 -3.8843 -0.6964 30 6 1.9078 -3.7210 -0.0005 31 1 1.9897 -4.0779 1.0262 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5623 -2.1737 0.9339 34 1 -0.5808 -2.0212 -0.8460 35 1 -1.2860 -4.2563 -0.7819 36 1 -0.5943 -4.5240 0.8530 37 1 1.1418 -6.2121 0.6290 38 1 0.5133 -6.7046 -0.9699 39 1 3.5420 -7.7287 -4.3087 40 1 8.5160 -8.1520 -4.6215 41 1 9.8102 -7.9235 -2.3765 42 1 5.2026 -7.2703 -0.3733 43 1 4.5497 -5.5449 -1.1476 44 1 3.9186 -5.5413 0.5138 45 1 3.1431 -3.6445 -1.7549 46 1 3.9836 -3.2284 -0.2369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036748097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 79.039651 kcal Electronic energy + Delta-G solvation = -29620.413188 eV Core-core repulsion = 25704.646922 eV Total energy + Delta-G solvation = -3915.766266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.06011 -40.34068 -38.55044 -37.55669 -35.45911 -33.48225 -32.53242 -31.61839 -30.53673 -30.13198 -29.27453 -28.05744 -25.22335 -24.32308 -23.97768 -22.72363 -22.39566 -21.19201 -20.27269 -19.96196 -19.29898 -18.26168 -17.57708 -16.80621 -16.35916 -16.05017 -15.80100 -15.27026 -15.15211 -14.81558 -14.50588 -14.26241 -13.96212 -13.72115 -13.59432 -13.24043 -13.13535 -12.96013 -12.75830 -12.62391 -12.50770 -12.47373 -11.68921 -11.53030 -11.44476 -10.92821 -10.84122 -10.77342 -10.53661 -10.24561 -10.12871 -10.04785 -9.89763 -9.65519 -9.51515 -9.43447 -8.76329 -8.65189 -8.57621 -8.39617 -6.86680 -5.74364 -3.07755 0.41804 1.08107 2.18463 2.55056 2.70717 3.03844 3.37193 3.41843 3.44127 3.70281 4.01514 4.26149 4.42457 4.46686 4.61128 4.74242 4.89523 4.95311 4.99854 5.05620 5.21430 5.30269 5.38740 5.48296 5.52844 5.56117 5.59600 5.76286 5.77248 5.85067 5.99354 6.04746 6.10381 6.12836 6.14521 6.19461 6.31007 6.44360 6.58425 6.58728 6.61472 6.78665 6.98465 7.03257 7.36989 7.52405 7.59355 7.78573 7.80886 8.11849 8.21678 9.16452 9.80059 10.48027 11.38098 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.003065 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.172874 B = 9133.548325 C =10566.777738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.128 3.872 15 N -0.598 5.598 16 C 0.564 3.436 17 O -0.537 6.537 18 C -0.161 4.161 19 C 0.149 3.851 20 N -0.453 5.453 21 C 0.110 3.890 22 C -0.199 4.199 23 C 0.078 3.922 24 N -0.582 5.582 25 H 0.422 0.578 26 C 0.029 3.971 27 C -0.045 4.045 28 C 0.103 3.897 29 C -0.129 4.129 30 C 0.167 3.833 31 H 0.020 0.980 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.181 0.819 42 H 0.140 0.860 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.894 -16.493 -1.259 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.145 4.145 13 H 0.099 0.901 14 C 0.006 3.994 15 N -0.330 5.330 16 C 0.351 3.649 17 O -0.415 6.415 18 C -0.168 4.168 19 C -0.021 4.021 20 N -0.161 5.161 21 C -0.021 4.021 22 C -0.224 4.224 23 C -0.053 4.053 24 N -0.185 5.185 25 H 0.260 0.740 26 C -0.080 4.080 27 C -0.074 4.074 28 C -0.020 4.020 29 C -0.169 4.169 30 C 0.059 3.941 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.198 0.802 42 H 0.157 0.843 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.600 -16.763 -2.136 22.332 hybrid contribution 0.561 1.289 1.419 1.998 sum 15.161 -15.474 -0.716 21.675 Atomic orbital electron populations 1.69941 1.04880 1.25063 1.56906 1.24792 0.95678 0.97628 1.02285 0.86161 0.78569 0.83695 0.77573 1.21617 1.21680 1.20767 1.18974 0.90310 0.82322 1.43869 0.90445 1.44211 1.01684 0.99439 1.86603 1.21536 0.83913 0.88318 1.00981 1.22704 0.95727 0.99635 0.99312 1.22659 0.97918 0.93185 1.00770 0.90088 1.21671 0.81111 0.97278 0.99308 1.48418 1.10294 1.26661 1.47675 1.18041 0.87165 0.81383 0.78325 1.90793 1.47046 1.43928 1.59699 1.20632 0.93366 1.06790 0.95984 1.22671 0.94337 0.93666 0.91416 1.67255 0.97538 1.13006 1.38282 1.19201 0.93808 1.00810 0.88264 1.20590 0.90207 1.12637 0.99002 1.22050 0.95921 1.00784 0.86521 1.41741 1.04179 1.62394 1.10201 0.74001 1.18951 0.86438 1.07484 0.95173 1.20628 0.88536 0.97954 1.00248 1.22192 0.89275 0.90549 1.00018 1.21902 0.99517 0.93236 1.02199 1.20662 0.91072 0.87322 0.95052 0.96251 0.93729 0.94361 0.92687 0.91959 0.92289 0.91120 0.89000 0.81719 0.82879 0.80232 0.84256 0.89703 0.91740 0.91252 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.44 55.49 0.58 -26.07 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.06 9.86 -15.06 -0.15 -6.21 16 8 H 0.08 1.98 7.18 -52.49 -0.38 1.61 16 9 N -0.59 -14.53 3.35 -163.07 -0.55 -15.08 16 10 C 0.18 4.18 5.45 -1.92 -0.01 4.17 16 11 C -0.13 -2.45 6.54 -25.13 -0.16 -2.61 16 12 C -0.12 -2.17 2.86 -89.35 -0.26 -2.43 16 13 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 14 C 0.13 1.90 5.96 -3.76 -0.02 1.87 16 15 N -0.60 -8.47 3.03 -173.26 -0.52 -9.00 16 16 C 0.56 8.35 7.23 -12.45 -0.09 8.26 16 17 O -0.54 -9.48 16.41 5.29 0.09 -9.39 16 18 C -0.16 -2.08 4.95 -104.79 -0.52 -2.60 16 19 C 0.15 1.98 10.87 -17.14 -0.19 1.79 16 20 N -0.45 -6.22 10.40 -10.71 -0.11 -6.33 16 21 C 0.11 1.33 7.32 -84.80 -0.62 0.70 16 22 C -0.20 -1.76 10.84 -39.54 -0.43 -2.18 16 23 C 0.08 0.45 11.82 -16.79 -0.20 0.25 16 24 N -0.58 -3.80 6.14 -10.66 -0.07 -3.86 16 25 H 0.42 1.42 8.96 -40.82 -0.37 1.05 16 26 C 0.03 0.29 7.27 -83.96 -0.61 -0.32 16 27 C -0.04 -0.47 7.48 -38.79 -0.29 -0.76 16 28 C 0.10 1.31 5.03 -3.19 -0.02 1.30 16 29 C -0.13 -2.13 5.46 -26.97 -0.15 -2.28 16 30 C 0.17 3.23 2.57 -67.95 -0.17 3.06 16 31 H 0.02 0.39 7.93 -51.93 -0.41 -0.02 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 34 H 0.05 1.46 7.21 -51.93 -0.37 1.08 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.98 8.12 -51.92 -0.42 0.56 16 37 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 38 H 0.09 1.40 7.02 -51.93 -0.36 1.03 16 39 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 42 H 0.14 1.18 7.03 -52.49 -0.37 0.81 16 43 H 0.08 0.98 4.72 -51.93 -0.24 0.73 16 44 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 45 H 0.07 1.24 8.11 -51.92 -0.42 0.82 16 46 H 0.08 1.27 7.59 -51.93 -0.39 0.88 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -34.11 364.20 -10.33 -44.44 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.24 Total: 1.41 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -3.98 Total: 1.72 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.67 Total: -60.34 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.11 -10.33 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036748097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.477 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds