Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99704 * 2 1 4 4 H 1.48501 * 109.47099 * 274.98992 * 3 2 1 5 5 H 1.48490 * 109.47259 * 34.99356 * 3 2 1 6 6 H 1.48504 * 109.46893 * 154.99284 * 3 2 1 7 7 C 1.38813 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00046 * 172.28269 * 7 2 1 9 9 N 1.36939 * 119.99551 * 352.28785 * 7 2 1 10 10 C 1.48157 * 126.40398 * 3.93879 * 9 7 2 11 11 C 1.55294 * 107.04241 * 184.91853 * 10 9 7 12 12 C 1.53742 * 101.84023 * 22.48352 * 11 10 9 13 13 H 1.09003 * 111.30811 * 79.83358 * 12 11 10 14 14 C 1.52246 * 114.75083 * 207.23387 * 12 11 10 15 15 N 1.47718 * 106.35542 * 169.60202 * 14 12 11 16 16 C 1.34775 * 119.68337 * 127.94737 * 15 14 12 17 17 O 1.21651 * 119.99814 * 1.12640 * 16 15 14 18 18 C 1.47072 * 120.00261 * 181.12709 * 16 15 14 19 19 C 1.35904 * 125.42336 * 154.55687 * 18 16 15 20 20 C 1.41428 * 107.66817 * 179.97438 * 19 18 16 21 21 C 1.39848 * 134.34625 * 179.97438 * 20 19 18 22 22 N 1.31555 * 120.04286 * 179.97438 * 21 20 19 23 23 C 1.32367 * 122.31903 * 0.02644 * 22 21 20 24 24 C 1.36636 * 121.64637 * 0.02562 * 23 22 21 25 25 C 1.39433 * 119.01241 * 359.94064 * 24 23 22 26 26 N 1.36881 * 134.32386 * 180.02562 * 25 24 23 27 27 H 0.96999 * 125.58720 * 359.97438 * 26 25 24 28 28 C 1.46594 * 120.63122 * 308.21361 * 15 14 12 29 29 C 1.53539 * 110.81654 * 47.46625 * 28 15 14 30 30 C 1.45470 * 126.40180 * 183.94022 * 9 7 2 31 31 H 1.09000 * 109.27526 * 266.21465 * 30 9 7 32 32 H 0.97005 * 119.99851 * 359.97438 * 1 2 3 33 33 H 1.09007 * 109.92212 * 65.57564 * 10 9 7 34 34 H 1.08997 * 109.92534 * 304.26713 * 10 9 7 35 35 H 1.08997 * 110.95947 * 264.34743 * 11 10 9 36 36 H 1.09004 * 110.95305 * 140.61710 * 11 10 9 37 37 H 1.09001 * 110.06565 * 50.39285 * 14 12 11 38 38 H 1.08996 * 110.06703 * 288.81149 * 14 12 11 39 39 H 1.07998 * 126.16584 * 0.02562 * 19 18 16 40 40 H 1.08003 * 119.97787 * 0.02562 * 21 20 19 41 41 H 1.08007 * 119.17535 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.49364 * 180.02562 * 24 23 22 43 43 H 1.09003 * 109.25630 * 167.83396 * 28 15 14 44 44 H 1.09002 * 109.25907 * 287.26116 * 28 15 14 45 45 H 1.09000 * 109.96478 * 189.67147 * 29 28 15 46 46 H 1.08999 * 109.72348 * 68.63173 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0830 -1.2062 -0.1261 9 7 1.3349 -2.3827 0.1581 10 6 -0.1339 -2.5488 0.2588 11 6 -0.4030 -4.0493 0.5550 12 6 0.9368 -4.4962 1.1623 13 1 1.0133 -4.2057 2.2101 14 6 1.2609 -5.9719 0.9749 15 7 2.6684 -6.1445 1.3887 16 6 2.9876 -7.0954 2.2889 17 8 2.1215 -7.8201 2.7412 18 6 4.3830 -7.2569 2.7246 19 6 4.7815 -7.7851 3.9117 20 6 6.1953 -7.7616 3.9389 21 6 7.1618 -8.1582 4.8686 22 7 8.4397 -8.0033 4.5970 23 6 8.8624 -7.4769 3.4584 24 6 7.9894 -7.0607 2.4933 25 6 6.6197 -7.1966 2.7162 26 7 5.4983 -6.8963 1.9912 27 1 5.4877 -6.4955 1.1079 28 6 3.7205 -5.2875 0.8340 29 6 3.3031 -3.8107 0.8819 30 6 1.9255 -3.7083 0.2592 31 1 1.9514 -4.1670 -0.7292 32 1 -0.4850 0.8401 0.0004 33 1 -0.6051 -2.2658 -0.6825 34 1 -0.5223 -1.9345 1.0712 35 1 -0.6162 -4.5959 -0.3637 36 1 -1.2146 -4.1654 1.2733 37 1 1.1419 -6.2509 -0.0721 38 1 0.6094 -6.5805 1.6019 39 1 4.1351 -8.1567 4.6929 40 1 6.8590 -8.5927 5.8099 41 1 9.9240 -7.3737 3.2881 42 1 8.3548 -6.6341 1.5708 43 1 4.6348 -5.4206 1.4124 44 1 3.9067 -5.5716 -0.2017 45 1 4.0114 -3.2053 0.3163 46 1 3.2681 -3.4717 1.9172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036751012.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = 92.004908 kcal Electronic energy + Delta-G solvation = -29548.917611 eV Core-core repulsion = 25633.713561 eV Total energy + Delta-G solvation = -3915.204050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.30231 -40.28996 -38.61312 -37.94150 -35.68096 -32.94713 -32.67489 -31.80025 -31.19442 -29.97794 -29.33147 -28.28530 -25.48304 -24.71695 -23.61331 -22.90542 -22.44470 -21.47269 -20.49927 -20.06763 -19.55411 -18.18934 -17.82620 -16.56095 -16.27607 -15.97370 -15.59897 -15.49659 -15.23240 -14.79934 -14.69707 -14.52870 -14.22436 -14.01065 -13.66704 -13.50312 -13.33013 -13.14350 -13.05819 -12.69977 -12.46317 -11.81602 -11.80200 -11.56770 -11.53010 -10.99894 -10.87862 -10.85696 -10.40627 -10.36703 -10.19556 -10.10762 -9.96813 -9.81728 -9.74554 -9.61753 -9.10449 -8.81486 -8.67464 -8.24014 -6.94229 -5.82125 -3.14017 0.36881 1.23647 1.78144 2.42900 2.69584 3.11069 3.32973 3.38760 3.40832 3.65652 4.10181 4.23907 4.29075 4.40553 4.60259 4.66081 4.78910 4.88544 4.95391 5.01573 5.14397 5.17558 5.26091 5.41298 5.43789 5.46317 5.53902 5.64612 5.68037 5.73750 5.85841 5.97706 6.00025 6.03960 6.08311 6.18328 6.22873 6.31034 6.47731 6.49653 6.52421 6.65926 6.88026 6.92222 7.17379 7.45035 7.52860 7.71656 7.80771 7.88701 8.14406 9.09345 9.73341 10.41024 11.30909 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002956 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.788771 B = 9469.826411 C =10993.571646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.127 3.873 15 N -0.599 5.599 16 C 0.579 3.421 17 O -0.524 6.524 18 C 0.027 3.973 19 C -0.095 4.095 20 C -0.173 4.173 21 C 0.176 3.824 22 N -0.507 5.507 23 C 0.103 3.897 24 C -0.179 4.179 25 C 0.134 3.866 26 N -0.572 5.572 27 H 0.428 0.572 28 C 0.084 3.916 29 C -0.128 4.128 30 C 0.169 3.831 31 H 0.020 0.980 32 H 0.253 0.747 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.565 -15.699 3.800 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.145 4.145 13 H 0.100 0.900 14 C 0.005 3.995 15 N -0.331 5.331 16 C 0.366 3.634 17 O -0.401 6.401 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.180 4.180 21 C 0.008 3.992 22 N -0.217 5.217 23 C -0.045 4.045 24 C -0.202 4.202 25 C 0.016 3.984 26 N -0.184 5.184 27 H 0.274 0.726 28 C -0.040 4.040 29 C -0.167 4.167 30 C 0.060 3.940 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.151 0.849 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.649 -15.974 4.365 20.247 hybrid contribution -0.112 1.621 -1.257 2.054 sum 11.537 -14.353 3.109 18.676 Atomic orbital electron populations 1.69952 1.04958 1.25202 1.56310 1.24807 0.95643 0.97668 1.02012 0.86180 0.78755 0.83794 0.77512 1.21646 1.21574 1.20652 1.18952 0.91111 0.82498 1.43315 0.90429 1.44184 1.01829 1.00478 1.85326 1.21545 0.83960 0.88742 1.00558 1.22715 0.95389 0.99835 0.99469 1.22653 0.98020 0.93118 1.00734 0.90037 1.21733 0.79834 0.97496 1.00388 1.48263 1.09609 1.33203 1.42022 1.17272 0.85963 0.80945 0.79222 1.90842 1.48299 1.44984 1.55933 1.20297 0.86649 1.06521 0.94714 1.20837 0.92862 1.01731 0.96878 1.19232 0.94754 1.07423 0.96556 1.22524 0.86734 0.92593 0.97316 1.67667 1.17126 1.16028 1.20836 1.22096 0.99869 0.94036 0.88453 1.20818 0.89445 1.07158 1.02796 1.18484 0.88841 0.98663 0.92395 1.42985 1.03687 1.53337 1.18354 0.72631 1.22334 0.90313 0.92552 0.98787 1.21802 0.99696 0.92510 1.02701 1.20611 0.90787 0.88003 0.94580 0.96320 0.93649 0.94194 0.92765 0.92232 0.91884 0.90885 0.88768 0.82115 0.82137 0.82555 0.84859 0.89559 0.91152 0.90257 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.17 10.49 55.49 0.58 -25.59 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 21.37 29.56 -169.99 -5.02 16.34 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.05 9.85 -15.06 -0.15 -6.20 16 8 H 0.08 1.94 7.28 -52.49 -0.38 1.56 16 9 N -0.59 -14.14 3.35 -163.08 -0.55 -14.69 16 10 C 0.18 4.07 5.45 -1.91 -0.01 4.06 16 11 C -0.14 -2.37 6.54 -25.13 -0.16 -2.53 16 12 C -0.12 -2.08 2.85 -89.36 -0.26 -2.33 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 14 C 0.13 1.78 5.96 -3.76 -0.02 1.75 16 15 N -0.60 -7.93 3.00 -174.14 -0.52 -8.45 16 16 C 0.58 8.06 7.61 -12.68 -0.10 7.97 16 17 O -0.52 -8.70 16.31 5.23 0.09 -8.61 16 18 C 0.03 0.32 6.35 -82.22 -0.52 -0.20 16 19 C -0.10 -1.07 10.62 -39.21 -0.42 -1.49 16 20 C -0.17 -1.86 6.21 -106.95 -0.66 -2.52 16 21 C 0.18 1.72 11.29 -17.07 -0.19 1.53 16 22 N -0.51 -5.36 10.33 -13.18 -0.14 -5.50 16 23 C 0.10 0.92 11.09 -17.90 -0.20 0.72 16 24 C -0.18 -1.54 10.09 -39.72 -0.40 -1.94 16 25 C 0.13 1.37 7.32 -84.03 -0.62 0.76 16 26 N -0.57 -5.64 4.79 -7.31 -0.04 -5.67 16 27 H 0.43 3.36 6.06 -40.82 -0.25 3.12 16 28 C 0.08 0.98 5.18 -3.71 -0.02 0.96 16 29 C -0.13 -1.98 5.48 -27.20 -0.15 -2.13 16 30 C 0.17 3.13 2.57 -67.97 -0.17 2.96 16 31 H 0.02 0.36 7.92 -51.93 -0.41 -0.05 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.04 1.02 7.79 -51.93 -0.40 0.61 16 34 H 0.05 1.40 7.22 -51.93 -0.37 1.03 16 35 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.09 1.35 7.00 -51.93 -0.36 0.98 16 39 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.16 1.13 8.06 -52.48 -0.42 0.70 16 41 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 42 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 43 H 0.09 0.87 3.79 -52.10 -0.20 0.67 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.23 7.64 -51.93 -0.40 0.84 16 46 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -32.11 363.07 -10.41 -42.52 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.13 Total: 3.04 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -4.15 Total: 1.13 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.66 Total: -59.89 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.11 -10.41 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036751012.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.526 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds