Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99908 * 2 1 4 4 H 1.48504 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47398 * 299.99904 * 3 2 1 6 6 H 1.48504 * 109.47458 * 59.99955 * 3 2 1 7 7 C 1.38808 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99980 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00229 * 359.97438 * 7 2 1 10 10 C 1.47218 * 125.88954 * 359.96732 * 9 7 2 11 11 C 1.54720 * 107.24455 * 176.29775 * 10 9 7 12 12 C 1.54198 * 102.06202 * 338.47493 * 11 10 9 13 13 H 1.08994 * 109.50663 * 281.52080 * 12 11 10 14 14 C 1.51394 * 112.92958 * 160.15785 * 12 11 10 15 15 N 1.46710 * 110.87794 * 290.13753 * 14 12 11 16 16 C 1.34780 * 121.35934 * 127.72808 * 15 14 12 17 17 O 1.21649 * 119.99962 * 186.47897 * 16 15 14 18 18 C 1.47069 * 120.00089 * 6.48153 * 16 15 14 19 19 C 1.35902 * 125.42258 * 203.62198 * 18 16 15 20 20 C 1.41434 * 107.67416 * 180.02562 * 19 18 16 21 21 C 1.39838 * 134.34690 * 179.97438 * 20 19 18 22 22 N 1.31561 * 120.03482 * 180.02562 * 21 20 19 23 23 C 1.32359 * 122.32624 * 0.02562 * 22 21 20 24 24 C 1.36635 * 121.64727 * 359.97438 * 23 22 21 25 25 C 1.39435 * 119.01115 * 0.02562 * 24 23 22 26 26 N 1.36878 * 134.33001 * 180.02562 * 25 24 23 27 27 H 0.97001 * 125.58333 * 0.03473 * 26 25 24 28 28 C 1.47221 * 117.28113 * 307.45739 * 15 14 12 29 29 C 1.52756 * 107.75623 * 58.35966 * 28 15 14 30 30 C 1.48634 * 125.89263 * 179.97438 * 9 7 2 31 31 H 1.08997 * 112.47401 * 328.35116 * 30 9 7 32 32 H 0.97007 * 120.00005 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.88584 * 56.88488 * 10 9 7 34 34 H 1.09004 * 110.01960 * 295.78437 * 10 9 7 35 35 H 1.09001 * 110.91238 * 220.28398 * 11 10 9 36 36 H 1.08994 * 110.91320 * 96.66490 * 11 10 9 37 37 H 1.09000 * 109.33059 * 169.75869 * 14 12 11 38 38 H 1.09001 * 109.22774 * 50.45263 * 14 12 11 39 39 H 1.07998 * 126.16079 * 359.75529 * 19 18 16 40 40 H 1.07998 * 119.98286 * 0.02562 * 21 20 19 41 41 H 1.08009 * 119.17914 * 180.02562 * 23 22 21 42 42 H 1.08005 * 120.49767 * 179.97438 * 24 23 22 43 43 H 1.08999 * 109.80330 * 177.92943 * 28 15 14 44 44 H 1.08997 * 109.80194 * 298.73622 * 28 15 14 45 45 H 1.09003 * 109.20039 * 62.47553 * 29 28 15 46 46 H 1.09000 * 109.19894 * 181.76593 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1388 -2.5391 0.0007 11 6 -0.4438 -4.0530 -0.0952 12 6 0.8637 -4.6077 -0.6955 13 1 0.8818 -4.4160 -1.7683 14 6 1.0354 -6.0938 -0.4633 15 7 1.2939 -6.3753 0.9531 16 6 0.5610 -7.2786 1.6339 17 8 0.7166 -7.4084 2.8334 18 6 -0.4268 -8.1073 0.9266 19 6 -1.5106 -8.6984 1.4949 20 6 -2.1991 -9.4007 0.4785 21 6 -3.3565 -10.1847 0.4440 22 7 -3.7551 -10.7209 -0.6893 23 6 -3.0959 -10.5491 -1.8241 24 6 -1.9554 -9.7990 -1.8842 25 6 -1.4768 -9.2015 -0.7187 26 7 -0.4006 -8.4093 -0.4224 27 1 0.2703 -8.1088 -1.0553 28 6 2.3906 -5.6353 1.5989 29 6 2.0859 -4.1440 1.4695 30 6 1.9327 -3.7447 -0.0016 31 1 2.8851 -3.7746 -0.5309 32 1 -0.4850 0.8401 0.0004 33 1 -0.5658 -2.0198 -0.8572 34 1 -0.5549 -2.1348 0.9235 35 1 -1.2869 -4.2386 -0.7607 36 1 -0.6288 -4.4759 0.8921 37 1 1.8728 -6.4577 -1.0587 38 1 0.1274 -6.6125 -0.7709 39 1 -1.7926 -8.6454 2.5361 40 1 -3.9235 -10.3501 1.3482 41 1 -3.4692 -11.0127 -2.7253 42 1 -1.4320 -9.6713 -2.8202 43 1 2.4514 -5.9098 2.6520 44 1 3.3335 -5.8649 1.1026 45 1 1.1606 -3.9198 2.0003 46 1 2.9006 -3.5719 1.9134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036751014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 86.264444 kcal Electronic energy + Delta-G solvation = -29885.393831 eV Core-core repulsion = 25969.940856 eV Total energy + Delta-G solvation = -3915.452975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.23145 -40.26069 -38.56935 -37.92026 -35.43045 -32.71776 -32.58099 -32.12583 -30.74590 -29.83566 -29.25055 -28.37767 -25.73217 -24.47942 -23.89152 -22.86177 -22.64124 -21.45451 -20.39133 -20.11707 -19.02631 -18.05347 -17.67606 -16.88404 -16.30742 -15.89243 -15.62129 -15.54380 -14.91979 -14.79505 -14.69673 -14.48580 -14.23190 -13.88113 -13.67289 -13.41854 -13.27361 -13.20118 -12.90689 -12.72031 -12.08799 -11.88919 -11.76744 -11.66993 -11.44745 -11.15350 -10.88381 -10.78303 -10.38480 -10.28593 -10.12297 -10.06312 -9.85240 -9.80026 -9.77795 -9.67469 -9.08529 -8.75868 -8.63669 -8.21036 -6.92491 -5.76948 -3.11098 0.39730 1.26649 1.81477 2.47210 2.75837 3.16715 3.35203 3.40687 3.43329 3.68535 4.16582 4.26638 4.32499 4.41850 4.58866 4.67567 4.82074 4.98819 5.03124 5.06868 5.15713 5.23464 5.34774 5.46499 5.48191 5.48858 5.56850 5.61706 5.70142 5.74513 5.80936 5.89289 5.98283 6.08986 6.23678 6.24798 6.26502 6.39277 6.47965 6.53243 6.56457 6.77989 6.92602 6.98196 7.26897 7.49128 7.54693 7.76277 7.83525 7.94275 8.17145 9.14364 9.74273 10.41036 11.34338 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.002798 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.767191 B =10003.944298 C =10670.692803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.180 3.820 11 C -0.137 4.137 12 C -0.113 4.113 13 H 0.082 0.918 14 C 0.102 3.898 15 N -0.599 5.599 16 C 0.585 3.415 17 O -0.523 6.523 18 C 0.028 3.972 19 C -0.095 4.095 20 C -0.172 4.172 21 C 0.176 3.824 22 N -0.507 5.507 23 C 0.103 3.897 24 C -0.180 4.180 25 C 0.135 3.865 26 N -0.570 5.570 27 H 0.425 0.575 28 C 0.113 3.887 29 C -0.143 4.143 30 C 0.167 3.833 31 H 0.062 0.938 32 H 0.252 0.748 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -20.171 -3.394 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.325 5.325 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.133 4.133 13 H 0.101 0.899 14 C -0.022 4.022 15 N -0.331 5.331 16 C 0.372 3.628 17 O -0.400 6.400 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.179 4.179 21 C 0.009 3.991 22 N -0.217 5.217 23 C -0.045 4.045 24 C -0.203 4.203 25 C 0.018 3.982 26 N -0.180 5.180 27 H 0.269 0.731 28 C -0.009 4.009 29 C -0.184 4.184 30 C 0.059 3.941 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.174 0.826 42 H 0.151 0.849 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.003 -20.383 -2.929 20.690 hybrid contribution 1.524 1.776 -0.483 2.390 sum -0.478 -18.607 -3.411 18.923 Atomic orbital electron populations 1.69970 1.04885 1.24950 1.56962 1.24801 0.95700 0.97662 1.02252 0.86064 0.78685 0.83854 0.77249 1.20534 1.21794 1.21770 1.19074 0.90406 0.82309 1.43816 0.90415 1.44923 1.01375 0.99343 1.86812 1.21182 0.84289 0.88066 1.00945 1.22772 0.95295 0.99981 0.99445 1.21929 0.98555 0.91729 1.01086 0.89930 1.21703 1.01041 0.98176 0.81272 1.48045 1.33797 1.39522 1.11770 1.17137 0.79729 0.79613 0.86334 1.90845 1.66726 1.69242 1.13141 1.20284 1.00322 1.04655 0.82775 1.20851 0.93693 0.98176 0.99569 1.19225 0.99680 1.05306 0.93723 1.22522 0.90855 0.89545 0.96190 1.67662 1.32515 1.22773 0.98755 1.22086 0.91039 0.95106 0.96232 1.20802 1.00209 1.02824 0.96442 1.18447 0.89193 0.94733 0.95836 1.42668 1.23613 1.43162 1.08558 0.73133 1.21799 0.87620 0.92552 0.98922 1.22542 1.02951 0.92455 1.00461 1.21163 0.94391 0.86134 0.92390 0.92042 0.93792 0.93076 0.94566 0.92464 0.92572 0.91257 0.90048 0.82132 0.82142 0.82598 0.84923 0.89280 0.91279 0.91300 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.35 55.49 0.57 -25.94 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.04 10.31 -15.06 -0.16 -6.20 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.24 2.88 -161.76 -0.47 -14.71 16 10 C 0.18 4.19 5.09 -2.74 -0.01 4.18 16 11 C -0.14 -2.43 5.90 -25.20 -0.15 -2.57 16 12 C -0.11 -1.71 2.89 -90.33 -0.26 -1.97 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 14 C 0.10 1.16 4.73 -4.74 -0.02 1.14 16 15 N -0.60 -7.86 2.79 -175.45 -0.49 -8.35 16 16 C 0.58 8.31 7.65 -12.68 -0.10 8.21 16 17 O -0.52 -8.98 16.44 5.23 0.09 -8.90 16 18 C 0.03 0.34 6.33 -82.22 -0.52 -0.18 16 19 C -0.10 -1.10 10.61 -39.20 -0.42 -1.52 16 20 C -0.17 -1.89 6.21 -106.94 -0.66 -2.55 16 21 C 0.18 1.77 11.29 -17.07 -0.19 1.58 16 22 N -0.51 -5.44 10.33 -13.18 -0.14 -5.58 16 23 C 0.10 0.92 11.09 -17.90 -0.20 0.72 16 24 C -0.18 -1.54 10.09 -39.72 -0.40 -1.94 16 25 C 0.14 1.40 7.32 -84.03 -0.62 0.78 16 26 N -0.57 -5.61 4.82 -7.31 -0.04 -5.64 16 27 H 0.42 3.26 6.34 -40.82 -0.26 3.00 16 28 C 0.11 1.54 6.44 -3.77 -0.02 1.52 16 29 C -0.14 -2.43 5.22 -26.75 -0.14 -2.57 16 30 C 0.17 3.03 3.63 -66.17 -0.24 2.79 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.05 1.34 7.24 -51.93 -0.38 0.96 16 34 H 0.04 0.96 7.67 -51.93 -0.40 0.56 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.02 7.41 -51.93 -0.38 0.64 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.83 4.26 -51.93 -0.22 0.61 16 39 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 42 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.09 1.28 7.08 -51.93 -0.37 0.91 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.36 6.92 -51.93 -0.36 1.00 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -32.49 362.89 -10.37 -42.86 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.14 Total: 3.04 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -4.21 Total: 1.10 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.55 Total: -60.21 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.49 -10.37 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036751014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.124 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds