Wall clock time and date at job start Sat Apr 11 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48503 * 109.47441 * 274.98635 * 3 2 1 5 5 H 1.48504 * 109.47320 * 34.98951 * 3 2 1 6 6 H 1.48502 * 109.47265 * 154.98878 * 3 2 1 7 7 C 1.38808 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 185.77055 * 7 2 1 9 9 N 1.36941 * 120.00073 * 5.77306 * 7 2 1 10 10 C 1.48154 * 126.40219 * 353.05133 * 9 7 2 11 11 C 1.55288 * 107.04326 * 184.96045 * 10 9 7 12 12 C 1.53748 * 101.84246 * 22.48028 * 11 10 9 13 13 H 1.09000 * 111.29968 * 79.83867 * 12 11 10 14 14 C 1.52243 * 114.74825 * 207.23776 * 12 11 10 15 15 N 1.47714 * 106.35326 * 169.60265 * 14 12 11 16 16 C 1.34778 * 119.68611 * 127.92021 * 15 14 12 17 17 O 1.21642 * 119.99891 * 354.20305 * 16 15 14 18 18 C 1.47307 * 120.00453 * 174.19805 * 16 15 14 19 19 C 1.46606 * 120.61418 * 331.07115 * 18 16 15 20 20 C 1.34233 * 119.80757 * 179.67877 * 19 18 16 21 21 N 1.37385 * 120.95261 * 0.62344 * 20 19 18 22 22 C 1.34897 * 132.30181 * 179.65851 * 21 20 19 23 23 N 1.30988 * 109.50353 * 179.97438 * 22 21 20 24 24 C 1.33129 * 109.93058 * 0.02562 * 23 22 21 25 25 C 1.38190 * 120.83289 * 359.64909 * 21 20 19 26 26 C 1.38582 * 120.61303 * 151.34234 * 18 16 15 27 27 C 1.46600 * 120.63504 * 307.94924 * 15 14 12 28 28 C 1.53952 * 110.58641 * 47.81053 * 27 15 14 29 29 C 1.45469 * 126.40524 * 173.10220 * 9 7 2 30 30 H 1.09002 * 109.27118 * 266.17722 * 29 9 7 31 31 H 0.97000 * 120.00538 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.92042 * 65.61143 * 10 9 7 33 33 H 1.09002 * 109.92241 * 304.30879 * 10 9 7 34 34 H 1.09004 * 110.95433 * 264.34287 * 11 10 9 35 35 H 1.08992 * 110.95561 * 140.62109 * 11 10 9 36 36 H 1.09002 * 110.06835 * 288.81173 * 14 12 11 37 37 H 1.09001 * 110.07042 * 50.39223 * 14 12 11 38 38 H 1.08005 * 120.09310 * 359.97438 * 19 18 16 39 39 H 1.08003 * 119.51859 * 180.29864 * 20 19 18 40 40 H 1.07994 * 125.24764 * 359.97438 * 22 21 20 41 41 H 1.08001 * 126.30727 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.49365 * 0.03137 * 26 18 16 43 43 H 1.09002 * 109.24866 * 287.52515 * 27 15 14 44 44 H 1.09004 * 109.22401 * 168.08390 * 27 15 14 45 45 H 1.08997 * 109.88265 * 189.49496 * 28 27 15 46 46 H 1.08996 * 109.87816 * 68.41287 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0861 -1.2045 0.0935 9 7 1.3308 -2.3850 -0.1204 10 6 -0.1406 -2.5585 -0.1130 11 6 -0.4190 -4.0858 -0.1494 12 6 0.8969 -4.6596 0.4012 13 1 0.9321 -4.5962 1.4888 14 6 1.2299 -6.0651 -0.0798 15 7 2.6205 -6.3304 0.3420 16 6 2.9057 -7.4512 1.0342 17 8 2.0074 -8.1852 1.4001 18 6 4.3053 -7.7873 1.3475 19 6 5.3927 -7.3550 0.4644 20 6 6.6628 -7.6647 0.7689 21 7 6.9618 -8.3949 1.8936 22 6 8.1295 -8.8329 2.4078 23 7 7.8989 -9.4968 3.5132 24 6 6.5917 -9.5208 3.7638 25 6 5.9623 -8.8240 2.7460 26 6 4.6179 -8.5229 2.4797 27 6 3.6933 -5.3861 0.0156 28 6 3.2712 -3.9466 0.3618 29 6 1.9187 -3.7063 -0.2776 30 1 1.9837 -3.9472 -1.3387 31 1 -0.4851 0.8400 0.0004 32 1 -0.5752 -2.0807 -0.9911 33 1 -0.5610 -2.1259 0.7948 34 1 -0.5956 -4.4256 -1.1699 35 1 -1.2577 -4.3446 0.4967 36 1 0.5553 -6.7874 0.3798 37 1 1.1520 -6.1171 -1.1658 38 1 5.1728 -6.7848 -0.4262 39 1 7.4606 -7.3397 0.1175 40 1 9.1041 -8.6624 1.9749 41 1 6.1107 -9.9956 4.6062 42 1 3.8384 -8.8597 3.1469 43 1 3.9156 -5.4491 -1.0497 44 1 4.5857 -5.6460 0.5849 45 1 4.0002 -3.2407 -0.0361 46 1 3.1955 -3.8326 1.4432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036762421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:09 Heat of formation + Delta-G solvation = 107.944667 kcal Electronic energy + Delta-G solvation = -29526.621323 eV Core-core repulsion = 25612.108473 eV Total energy + Delta-G solvation = -3914.512850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.04406 -40.50281 -38.46143 -37.16497 -35.54339 -33.67182 -32.78945 -31.68394 -31.29886 -29.76081 -28.63690 -28.11970 -25.28727 -24.62207 -23.81008 -22.78722 -22.40804 -22.11925 -20.23136 -19.96380 -19.23076 -18.26404 -17.93722 -16.57025 -16.29959 -16.16592 -15.78804 -15.45430 -15.14320 -14.89722 -14.77326 -14.54607 -14.14038 -13.96567 -13.80645 -13.40782 -13.21163 -13.01011 -12.64177 -12.54732 -12.14830 -12.06405 -11.70768 -11.56102 -11.37695 -10.98540 -10.87955 -10.85471 -10.79263 -10.62835 -10.23934 -10.15213 -9.98972 -9.87792 -9.72120 -9.57731 -9.42034 -8.65998 -8.65053 -7.88048 -6.88204 -5.78272 -3.11003 0.25239 0.75943 2.24997 2.45427 2.74388 2.86307 3.26486 3.35323 3.40195 3.42827 4.02047 4.14339 4.26348 4.31378 4.43918 4.57105 4.60672 4.89191 4.94164 5.10140 5.12900 5.25309 5.26736 5.29910 5.42207 5.47743 5.51343 5.55419 5.69270 5.73501 5.82140 5.95086 6.06889 6.07849 6.09849 6.15809 6.18626 6.28427 6.41406 6.54918 6.56981 6.74694 6.78871 6.99571 7.33639 7.50320 7.50636 7.56476 7.75425 8.05599 8.18789 9.13453 9.77290 10.45762 11.34912 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002789 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.224945 B =10035.648540 C =11252.073850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.126 3.874 15 N -0.598 5.598 16 C 0.563 3.437 17 O -0.541 6.541 18 C -0.145 4.145 19 C -0.114 4.114 20 C 0.037 3.963 21 N -0.365 5.365 22 C 0.152 3.848 23 N -0.461 5.461 24 C 0.006 3.994 25 C -0.017 4.017 26 C 0.004 3.996 27 C 0.096 3.904 28 C -0.131 4.131 29 C 0.168 3.832 30 H 0.020 0.980 31 H 0.253 0.747 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.212 0.788 41 H 0.185 0.815 42 H 0.158 0.842 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.922 -16.712 0.114 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.330 5.330 16 C 0.351 3.649 17 O -0.419 6.419 18 C -0.151 4.151 19 C -0.134 4.134 20 C -0.081 4.081 21 N -0.037 5.037 22 C -0.123 4.123 23 N -0.175 5.175 24 C -0.150 4.150 25 C -0.125 4.125 26 C -0.017 4.017 27 C -0.027 4.027 28 C -0.171 4.171 29 C 0.060 3.940 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.229 0.771 41 H 0.202 0.798 42 H 0.175 0.825 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.096 0.904 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.132 -17.134 0.689 21.006 hybrid contribution -0.059 1.536 -0.602 1.651 sum 12.073 -15.599 0.087 19.725 Atomic orbital electron populations 1.69946 1.04945 1.25136 1.56542 1.24815 0.95662 0.97666 1.02114 0.86155 0.78673 0.83763 0.77499 1.21617 1.21773 1.20661 1.18980 0.90794 0.82373 1.43534 0.90413 1.44201 1.01636 1.00426 1.85601 1.21530 0.84000 0.88106 1.01077 1.22719 0.95650 0.99453 0.99669 1.22640 0.97910 0.93288 1.00621 0.90203 1.21687 0.80925 0.97593 0.99339 1.48168 1.09867 1.20449 1.54530 1.17917 0.87615 0.81315 0.78017 1.90801 1.47498 1.50695 1.52939 1.20971 0.93472 1.03256 0.97428 1.22336 0.90243 0.99841 1.01022 1.21516 0.98579 0.98531 0.89471 1.42952 1.08709 1.34691 1.17315 1.24974 0.90289 1.02562 0.94516 1.69991 1.17006 1.17209 1.13256 1.22785 0.89037 1.03538 0.99661 1.19578 0.89356 1.07394 0.96212 1.20902 0.92950 0.92327 0.95501 1.22452 0.89891 0.90000 1.00357 1.21930 0.99584 0.93608 1.01929 1.20613 0.90953 0.86965 0.95488 0.96237 0.93697 0.93861 0.93337 0.92257 0.92011 0.89010 0.91064 0.81636 0.81186 0.77113 0.79819 0.82476 0.91331 0.88916 0.90375 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.49 55.49 0.58 -25.80 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.46 29.56 -169.99 -5.02 16.44 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.03 9.89 -15.06 -0.15 -6.18 16 8 H 0.08 1.96 7.18 -52.49 -0.38 1.58 16 9 N -0.59 -14.29 3.35 -163.09 -0.55 -14.84 16 10 C 0.18 4.14 5.44 -1.92 -0.01 4.13 16 11 C -0.14 -2.43 6.54 -25.13 -0.16 -2.59 16 12 C -0.12 -2.11 2.85 -89.36 -0.26 -2.36 16 13 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 14 C 0.13 1.81 5.97 -3.76 -0.02 1.78 16 15 N -0.60 -7.98 3.00 -173.79 -0.52 -8.50 16 16 C 0.56 7.82 7.45 -12.57 -0.09 7.72 16 17 O -0.54 -9.13 16.07 5.24 0.08 -9.05 16 18 C -0.15 -1.64 5.53 -102.71 -0.57 -2.20 16 19 C -0.11 -0.95 7.52 -37.62 -0.28 -1.23 16 20 C 0.04 0.26 10.92 -16.47 -0.18 0.08 16 21 N -0.37 -3.34 2.94 -62.50 -0.18 -3.53 16 22 C 0.15 1.31 12.70 -90.10 -1.14 0.17 16 23 N -0.46 -5.06 11.18 -13.90 -0.16 -5.22 16 24 C 0.01 0.06 12.03 -16.90 -0.20 -0.14 16 25 C -0.02 -0.18 6.77 -84.12 -0.57 -0.75 16 26 C 0.00 0.05 9.71 -38.67 -0.38 -0.33 16 27 C 0.10 1.11 4.58 -3.49 -0.02 1.09 16 28 C -0.13 -2.05 5.45 -26.98 -0.15 -2.20 16 29 C 0.17 3.16 2.57 -67.98 -0.17 2.99 16 30 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.04 1.11 7.59 -51.93 -0.39 0.72 16 33 H 0.05 1.27 7.46 -51.93 -0.39 0.88 16 34 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.36 6.98 -51.93 -0.36 1.00 16 37 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.17 1.08 5.35 -52.48 -0.28 0.80 16 39 H 0.17 0.57 8.06 -52.48 -0.42 0.14 16 40 H 0.21 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.16 1.57 7.93 -52.49 -0.42 1.16 16 43 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 44 H 0.09 0.91 4.30 -51.93 -0.22 0.68 16 45 H 0.08 1.22 7.63 -51.93 -0.40 0.83 16 46 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -33.70 362.42 -10.91 -44.62 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.16 Total: 0.70 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -4.45 Total: -0.27 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: -0.83 Total: -57.89 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.08 Total: -9.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.70 -10.91 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036762421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.560 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds