Wall clock time and date at job start Sat Apr 11 2020 06:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48503 * 109.47441 * 274.98635 * 3 2 1 5 5 H 1.48504 * 109.47320 * 34.98951 * 3 2 1 6 6 H 1.48502 * 109.47265 * 154.98878 * 3 2 1 7 7 C 1.38808 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 185.77055 * 7 2 1 9 9 N 1.36941 * 120.00073 * 5.77306 * 7 2 1 10 10 C 1.48154 * 126.40219 * 353.05133 * 9 7 2 11 11 C 1.55288 * 107.04326 * 184.96045 * 10 9 7 12 12 C 1.53748 * 101.84246 * 22.48028 * 11 10 9 13 13 H 1.09000 * 111.29968 * 79.83867 * 12 11 10 14 14 C 1.52243 * 114.74825 * 207.23776 * 12 11 10 15 15 N 1.47714 * 106.35326 * 169.60265 * 14 12 11 16 16 C 1.34778 * 119.68611 * 127.92021 * 15 14 12 17 17 O 1.21642 * 119.99891 * 354.20305 * 16 15 14 18 18 C 1.47307 * 120.00453 * 174.19805 * 16 15 14 19 19 C 1.46606 * 120.61418 * 331.07115 * 18 16 15 20 20 C 1.34233 * 119.80757 * 179.67877 * 19 18 16 21 21 N 1.37385 * 120.95261 * 0.62344 * 20 19 18 22 22 C 1.34897 * 132.30181 * 179.65851 * 21 20 19 23 23 N 1.30988 * 109.50353 * 179.97438 * 22 21 20 24 24 C 1.33129 * 109.93058 * 0.02562 * 23 22 21 25 25 C 1.38190 * 120.83289 * 359.64909 * 21 20 19 26 26 C 1.38582 * 120.61303 * 151.34234 * 18 16 15 27 27 C 1.46600 * 120.63504 * 307.94924 * 15 14 12 28 28 C 1.53952 * 110.58641 * 47.81053 * 27 15 14 29 29 C 1.45469 * 126.40524 * 173.10220 * 9 7 2 30 30 H 1.09002 * 109.27118 * 266.17722 * 29 9 7 31 31 H 0.97000 * 120.00538 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.92042 * 65.61143 * 10 9 7 33 33 H 1.09002 * 109.92241 * 304.30879 * 10 9 7 34 34 H 1.09004 * 110.95433 * 264.34287 * 11 10 9 35 35 H 1.08992 * 110.95561 * 140.62109 * 11 10 9 36 36 H 1.09002 * 110.06835 * 288.81173 * 14 12 11 37 37 H 1.09001 * 110.07042 * 50.39223 * 14 12 11 38 38 H 1.08005 * 120.09310 * 359.97438 * 19 18 16 39 39 H 1.08003 * 119.51859 * 180.29864 * 20 19 18 40 40 H 1.07994 * 125.24764 * 359.97438 * 22 21 20 41 41 H 1.08001 * 126.30727 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.49365 * 0.03137 * 26 18 16 43 43 H 1.09002 * 109.24866 * 287.52515 * 27 15 14 44 44 H 1.09004 * 109.22401 * 168.08390 * 27 15 14 45 45 H 1.08997 * 109.88265 * 189.49496 * 28 27 15 46 46 H 1.08996 * 109.87816 * 68.41287 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2021 -0.0005 8 1 3.0861 -1.2045 0.0935 9 7 1.3308 -2.3850 -0.1204 10 6 -0.1406 -2.5585 -0.1130 11 6 -0.4190 -4.0858 -0.1494 12 6 0.8969 -4.6596 0.4012 13 1 0.9321 -4.5962 1.4888 14 6 1.2299 -6.0651 -0.0798 15 7 2.6205 -6.3304 0.3420 16 6 2.9057 -7.4512 1.0342 17 8 2.0074 -8.1852 1.4001 18 6 4.3053 -7.7873 1.3475 19 6 5.3927 -7.3550 0.4644 20 6 6.6628 -7.6647 0.7689 21 7 6.9618 -8.3949 1.8936 22 6 8.1295 -8.8329 2.4078 23 7 7.8989 -9.4968 3.5132 24 6 6.5917 -9.5208 3.7638 25 6 5.9623 -8.8240 2.7460 26 6 4.6179 -8.5229 2.4797 27 6 3.6933 -5.3861 0.0156 28 6 3.2712 -3.9466 0.3618 29 6 1.9187 -3.7063 -0.2776 30 1 1.9837 -3.9472 -1.3387 31 1 -0.4851 0.8400 0.0004 32 1 -0.5752 -2.0807 -0.9911 33 1 -0.5610 -2.1259 0.7948 34 1 -0.5956 -4.4256 -1.1699 35 1 -1.2577 -4.3446 0.4967 36 1 0.5553 -6.7874 0.3798 37 1 1.1520 -6.1171 -1.1658 38 1 5.1728 -6.7848 -0.4262 39 1 7.4606 -7.3397 0.1175 40 1 9.1041 -8.6624 1.9749 41 1 6.1107 -9.9956 4.6062 42 1 3.8384 -8.8597 3.1469 43 1 3.9156 -5.4491 -1.0497 44 1 4.5857 -5.6460 0.5849 45 1 4.0002 -3.2407 -0.0361 46 1 3.1955 -3.8326 1.4432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036762421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:08 Heat of formation + Delta-G solvation = 88.891557 kcal Electronic energy + Delta-G solvation = -29527.447528 eV Core-core repulsion = 25612.108473 eV Total energy + Delta-G solvation = -3915.339055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.71616 -41.63331 -39.81882 -37.92993 -36.88679 -34.68404 -34.25587 -33.06183 -32.16324 -31.24946 -29.77299 -29.21346 -26.77596 -25.89427 -24.76501 -23.88589 -23.49360 -22.81344 -21.88395 -21.30633 -20.37734 -19.04042 -18.85298 -18.24724 -17.27350 -17.00603 -16.90843 -16.67051 -16.36204 -16.02864 -15.73116 -15.66704 -15.49264 -15.14841 -14.70099 -14.67399 -14.39775 -14.23187 -13.84748 -13.78931 -13.32869 -13.23518 -13.09445 -12.85015 -12.76818 -12.68355 -12.30333 -12.10293 -11.98996 -11.79697 -11.71943 -11.62214 -11.50502 -11.34975 -11.07331 -10.93173 -10.69266 -10.19758 -9.76506 -8.85096 -8.56326 -7.84124 -5.17617 -0.51118 0.13463 1.46697 1.47948 1.55218 1.56450 1.65182 1.84986 2.06530 2.43870 2.51384 3.25382 3.35913 3.45983 3.50332 3.63379 3.75152 3.85432 3.87108 3.91259 3.98456 4.00057 4.20157 4.20801 4.37629 4.44964 4.49106 4.58669 4.64210 4.69653 4.72045 4.80485 4.82303 4.89104 4.90331 4.97342 5.06970 5.09280 5.22189 5.41630 5.45819 5.49514 5.54073 5.55434 5.67284 5.76003 6.20525 6.21417 6.30058 6.82045 7.00687 7.09768 7.80560 8.49954 9.28788 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016105 B = 0.002789 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.224945 B =10035.648540 C =11252.073850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.264 1.264 7 C -0.228 4.228 8 H 0.090 0.910 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.122 4.122 12 C -0.111 4.111 13 H 0.057 0.943 14 C 0.134 3.866 15 N -0.599 5.599 16 C 0.562 3.438 17 O -0.579 6.579 18 C -0.157 4.157 19 C -0.127 4.127 20 C 0.053 3.947 21 N -0.372 5.372 22 C 0.165 3.835 23 N -0.495 5.495 24 C -0.005 4.005 25 C -0.035 4.035 26 C -0.004 4.004 27 C 0.103 3.897 28 C -0.126 4.126 29 C 0.158 3.842 30 H 0.030 0.970 31 H 0.244 0.756 32 H 0.009 0.991 33 H 0.007 0.993 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.189 0.811 39 H 0.218 0.782 40 H 0.252 0.748 41 H 0.197 0.803 42 H 0.151 0.849 43 H 0.101 0.899 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.406 -17.930 -1.335 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.357 4.357 8 H 0.107 0.893 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.131 4.131 13 H 0.076 0.924 14 C 0.012 3.988 15 N -0.330 5.330 16 C 0.352 3.648 17 O -0.461 6.461 18 C -0.163 4.163 19 C -0.147 4.147 20 C -0.064 4.064 21 N -0.044 5.044 22 C -0.111 4.111 23 N -0.209 5.209 24 C -0.160 4.160 25 C -0.144 4.144 26 C -0.026 4.026 27 C -0.019 4.019 28 C -0.165 4.165 29 C 0.051 3.949 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.025 0.975 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.206 0.794 39 H 0.234 0.766 40 H 0.268 0.732 41 H 0.214 0.786 42 H 0.169 0.831 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.100 0.900 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.654 -18.380 -0.765 24.155 hybrid contribution -1.078 1.851 -0.105 2.145 sum 14.576 -16.529 -0.870 22.055 Atomic orbital electron populations 1.70173 1.06465 1.25090 1.58640 1.25648 0.96473 1.01047 1.03161 0.85132 0.77984 0.79545 0.77161 1.21507 1.22876 1.18848 1.19421 0.91520 0.83389 1.41411 0.89274 1.44500 1.02150 1.01965 1.85403 1.21289 0.83991 0.91521 0.97493 1.22586 0.96777 0.95189 1.01490 1.22465 0.96685 0.94838 0.99112 0.92424 1.21548 0.81777 0.95079 1.00372 1.48201 1.09757 1.20681 1.54333 1.18313 0.88471 0.80886 0.77085 1.90778 1.48963 1.51963 1.54352 1.20898 0.92789 1.04177 0.98448 1.22487 0.89745 1.01075 1.01415 1.22248 0.99440 0.96174 0.88508 1.43182 1.08440 1.34982 1.17778 1.25805 0.91392 1.00442 0.93459 1.70004 1.17283 1.18748 1.14884 1.23126 0.89200 1.03518 1.00171 1.19584 0.89544 1.08246 0.97004 1.20898 0.93291 0.92618 0.95758 1.22605 0.89847 0.86662 1.02771 1.21866 0.97707 0.96699 1.00228 1.20886 0.93076 0.84631 0.96296 0.95270 0.94648 0.97234 0.97467 0.90010 0.90707 0.89522 0.88968 0.79422 0.76581 0.73179 0.78637 0.83107 0.88079 0.86381 0.90035 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.28 10.49 21.65 0.23 -57.05 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 3 Si 0.97 44.75 29.56 68.60 2.03 46.78 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.23 -12.15 9.89 84.03 0.83 -11.32 16 8 H 0.09 4.41 7.18 -2.91 -0.02 4.39 16 9 N -0.62 -30.03 3.35 -669.90 -2.24 -32.28 16 10 C 0.18 8.87 5.44 86.85 0.47 9.34 16 11 C -0.12 -4.33 6.54 31.63 0.21 -4.12 16 12 C -0.11 -3.68 2.85 -9.98 -0.03 -3.71 16 13 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.13 3.59 5.97 85.90 0.51 4.10 16 15 N -0.60 -14.60 3.00 -821.99 -2.47 -17.06 16 16 C 0.56 14.86 7.45 86.63 0.65 15.50 16 17 O -0.58 -19.48 16.07 -4.16 -0.07 -19.55 16 18 C -0.16 -3.24 5.53 -18.62 -0.10 -3.34 16 19 C -0.13 -1.60 7.52 23.54 0.18 -1.42 16 20 C 0.05 0.50 10.92 82.91 0.91 1.41 16 21 N -0.37 -5.56 2.94 -351.66 -1.03 -6.59 16 22 C 0.16 2.27 12.70 180.17 2.29 4.56 16 23 N -0.50 -9.93 11.18 -197.90 -2.21 -12.14 16 24 C 0.00 -0.09 12.03 84.55 1.02 0.93 16 25 C -0.04 -0.69 6.77 38.71 0.26 -0.43 16 26 C 0.00 -0.09 9.71 22.86 0.22 0.13 16 27 C 0.10 2.01 4.58 86.68 0.40 2.41 16 28 C -0.13 -3.68 5.45 30.43 0.17 -3.52 16 29 C 0.16 5.75 2.57 45.51 0.12 5.87 16 30 H 0.03 1.05 7.92 -2.39 -0.02 1.04 16 31 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.01 0.51 7.59 -2.38 -0.02 0.50 16 33 H 0.01 0.39 7.46 -2.39 -0.02 0.37 16 34 H 0.08 2.56 8.12 -2.39 -0.02 2.54 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.09 2.47 6.98 -2.39 -0.02 2.45 16 37 H 0.09 2.13 8.08 -2.39 -0.02 2.11 16 38 H 0.19 1.44 5.35 -2.91 -0.02 1.42 16 39 H 0.22 -0.05 8.06 -2.91 -0.02 -0.07 16 40 H 0.25 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.20 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.15 3.15 7.93 -2.91 -0.02 3.13 16 43 H 0.10 1.43 7.68 -2.39 -0.02 1.41 16 44 H 0.12 1.81 4.30 -2.39 -0.01 1.80 16 45 H 0.08 2.34 7.63 -2.39 -0.02 2.32 16 46 H 0.05 1.55 8.13 -2.39 -0.02 1.54 16 Total: -1.00 -78.19 362.42 3.79 -74.40 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.01 Total: 10.58 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 8.56 Total: 12.92 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -7.73 Total: -125.13 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.07 Total: -19.55 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -78.19 3.79 -74.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036762421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.289 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds