Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99907 * 2 1 4 4 H 1.48503 * 109.46919 * 95.55060 * 3 2 1 5 5 H 1.48491 * 109.47505 * 335.54628 * 3 2 1 6 6 H 1.48499 * 109.46853 * 215.54376 * 3 2 1 7 7 C 1.38813 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99725 * 28.32564 * 7 2 1 9 9 N 1.36939 * 120.00199 * 208.32261 * 7 2 1 10 10 C 1.48159 * 126.40336 * 2.58234 * 9 7 2 11 11 C 1.55293 * 107.04039 * 175.04093 * 10 9 7 12 12 C 1.53745 * 101.84020 * 337.52076 * 11 10 9 13 13 H 1.09008 * 111.30614 * 281.04427 * 12 11 10 14 14 C 1.52242 * 114.74366 * 152.76326 * 12 11 10 15 15 N 1.47799 * 106.11932 * 189.87544 * 14 12 11 16 16 C 1.34769 * 119.83392 * 232.11476 * 15 14 12 17 17 O 1.21586 * 120.00187 * 5.35974 * 16 15 14 18 18 C 1.47662 * 120.00169 * 185.36344 * 16 15 14 19 19 C 1.41771 * 120.37295 * 223.48353 * 18 16 15 20 20 C 1.34538 * 120.14474 * 179.73146 * 19 18 16 21 21 N 1.36723 * 120.95740 * 0.57295 * 20 19 18 22 22 C 1.36439 * 132.26963 * 179.71284 * 21 20 19 23 23 C 1.35446 * 107.21896 * 179.97438 * 22 21 20 24 24 N 1.33178 * 108.62311 * 0.02562 * 23 22 21 25 25 C 1.32650 * 109.12626 * 359.97438 * 24 23 22 26 26 C 1.38438 * 120.36766 * 43.75941 * 18 16 15 27 27 C 1.46601 * 120.47971 * 52.47098 * 15 14 12 28 28 C 1.53956 * 110.57233 * 311.84030 * 27 15 14 29 29 C 1.45462 * 126.40591 * 182.27191 * 9 7 2 30 30 H 1.08996 * 109.26768 * 93.83224 * 29 9 7 31 31 H 0.96998 * 120.00288 * 185.08970 * 1 2 3 32 32 H 1.08998 * 109.92388 * 294.38716 * 10 9 7 33 33 H 1.08995 * 109.91923 * 55.49293 * 10 9 7 34 34 H 1.09000 * 110.95501 * 95.65468 * 11 10 9 35 35 H 1.09004 * 110.95206 * 219.38274 * 11 10 9 36 36 H 1.08997 * 110.06612 * 309.63242 * 14 12 11 37 37 H 1.09004 * 110.07061 * 71.20695 * 14 12 11 38 38 H 1.07997 * 119.92577 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.52393 * 180.25916 * 20 19 18 40 40 H 1.07995 * 126.38853 * 359.95323 * 22 21 20 41 41 H 1.08004 * 125.68932 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.45650 * 359.95818 * 26 18 16 43 43 H 1.09005 * 109.25226 * 191.56188 * 27 15 14 44 44 H 1.08998 * 109.25619 * 72.12251 * 27 15 14 45 45 H 1.09000 * 109.88490 * 291.59207 * 28 27 15 46 46 H 1.09008 * 109.87917 * 170.51774 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6149 1.9787 1.3935 5 1 1.3941 2.6837 -0.5795 6 1 3.4842 1.4768 -0.8139 7 6 2.0103 -1.2022 0.0005 8 1 1.5672 -2.0817 -0.4429 9 7 3.2567 -1.2729 0.5632 10 6 3.9733 -0.1754 1.2539 11 6 5.2863 -0.7772 1.8242 12 6 4.9376 -2.2722 1.9084 13 1 4.3283 -2.4880 2.7862 14 6 6.1308 -3.2118 1.8021 15 7 5.5705 -4.5722 1.6609 16 6 5.9858 -5.5568 2.4820 17 8 6.7450 -5.3051 3.3977 18 6 5.5189 -6.9415 2.2695 19 6 5.1126 -7.7377 3.3698 20 6 4.6828 -8.9969 3.1704 21 7 4.6402 -9.5349 1.9142 22 6 4.2591 -10.7613 1.4535 23 6 4.4206 -10.7524 0.1087 24 7 4.8875 -9.5595 -0.2557 25 6 5.0297 -8.8005 0.8229 26 6 5.4784 -7.4785 0.9942 27 6 4.5709 -4.8612 0.6282 28 6 3.4547 -3.8010 0.6439 29 6 4.1222 -2.4415 0.6001 30 1 4.8032 -2.4117 -0.2505 31 1 -0.4850 -0.8367 0.0745 32 1 4.2062 0.6197 0.5456 33 1 3.3587 0.2174 2.0638 34 1 6.1203 -0.6092 1.1428 35 1 5.5041 -0.3714 2.8122 36 1 6.7345 -2.9526 0.9324 37 1 6.7340 -3.1544 2.7082 38 1 5.1436 -7.3310 4.3698 39 1 4.3717 -9.5932 4.0154 40 1 3.8968 -11.5855 2.0499 41 1 4.2072 -11.5756 -0.5570 42 1 5.7870 -6.8904 0.1425 43 1 4.1363 -5.8435 0.8135 44 1 5.0534 -4.8607 -0.3492 45 1 2.8662 -3.8958 1.5565 46 1 2.8118 -3.9266 -0.2274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036772033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 107.087757 kcal Electronic energy + Delta-G solvation = -29703.962112 eV Core-core repulsion = 25789.412104 eV Total energy + Delta-G solvation = -3914.550009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.16028 -40.60439 -38.74273 -37.23520 -35.74761 -34.09648 -32.81200 -31.72894 -30.70167 -30.55198 -29.25534 -28.17924 -25.63721 -24.36119 -23.74614 -22.83015 -22.66706 -22.11189 -20.58159 -20.07466 -19.26112 -18.41029 -17.53564 -17.15379 -16.82608 -16.34059 -16.02191 -15.48576 -15.10900 -15.06089 -14.80980 -14.66616 -14.25246 -14.01305 -13.91513 -13.52957 -13.25568 -13.00907 -12.90286 -12.80491 -12.43324 -12.26118 -12.11422 -11.90426 -11.45039 -11.31235 -11.04587 -10.89744 -10.76499 -10.58462 -10.49036 -10.10246 -10.07815 -9.77442 -9.53126 -9.24496 -9.20779 -8.74832 -8.47990 -8.19948 -7.09301 -6.36066 -3.15997 0.15407 0.76085 2.20392 2.33545 2.60910 2.77899 3.19808 3.43670 3.52248 3.69069 3.78547 4.03383 4.28216 4.30112 4.57394 4.63357 4.68739 4.86258 4.91903 4.97421 5.04867 5.09512 5.13501 5.26591 5.28398 5.36441 5.39781 5.53406 5.55680 5.60469 5.65668 5.76894 5.85047 5.95512 5.96945 6.02815 6.09389 6.17006 6.23312 6.26679 6.44494 6.49614 6.62761 6.63770 6.77659 6.89150 7.23227 7.48564 7.67065 7.93952 8.31629 9.00419 9.60323 10.26252 11.13322 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.002916 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.382467 B = 9600.022260 C =10587.906712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.016 4.016 3 Si 1.054 2.946 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.292 1.292 7 C -0.329 4.329 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.106 3.894 11 C -0.118 4.118 12 C -0.126 4.126 13 H 0.084 0.916 14 C 0.128 3.872 15 N -0.597 5.597 16 C 0.563 3.437 17 O -0.535 6.535 18 C -0.107 4.107 19 C -0.097 4.097 20 C 0.049 3.951 21 N -0.354 5.354 22 C -0.094 4.094 23 C 0.033 3.967 24 N -0.481 5.481 25 C 0.210 3.790 26 C -0.034 4.034 27 C 0.101 3.899 28 C -0.126 4.126 29 C 0.169 3.831 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.160 0.840 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.790 -19.570 5.902 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.216 4.216 3 Si 0.886 3.114 4 H -0.222 1.222 5 H -0.228 1.228 6 H -0.219 1.219 7 C -0.456 4.456 8 H 0.099 0.901 9 N -0.326 5.326 10 C -0.018 4.018 11 C -0.156 4.156 12 C -0.146 4.146 13 H 0.103 0.897 14 C 0.006 3.994 15 N -0.329 5.329 16 C 0.350 3.650 17 O -0.413 6.413 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.072 4.072 21 N -0.026 5.026 22 C -0.226 4.226 23 C -0.120 4.120 24 N -0.201 5.201 25 C -0.032 4.032 26 C -0.055 4.055 27 C -0.022 4.022 28 C -0.165 4.165 29 C 0.060 3.940 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.177 0.823 39 H 0.187 0.813 40 H 0.202 0.798 41 H 0.201 0.799 42 H 0.178 0.822 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.029 -17.562 5.454 21.974 hybrid contribution -0.167 -2.021 0.787 2.175 sum 11.863 -19.583 6.241 23.731 Atomic orbital electron populations 1.70895 1.06221 1.29221 1.49068 1.25631 0.96015 1.00752 0.99237 0.84056 0.74105 0.77022 0.76182 1.22158 1.22792 1.21946 1.19982 0.89652 0.98406 1.37540 0.90124 1.44497 1.16972 1.05653 1.65504 1.22138 0.91767 0.92157 0.95753 1.22391 0.97917 0.94524 1.00806 1.22623 0.96905 0.94449 1.00647 0.89716 1.21669 0.95657 0.79051 1.03007 1.48241 1.40990 1.09896 1.33749 1.17993 0.80998 0.84128 0.81860 1.90796 1.36435 1.83124 1.30918 1.19974 1.02945 0.95502 0.93183 1.20710 0.99028 0.91979 1.00090 1.21477 1.03838 0.95948 0.85980 1.42870 1.40225 1.11992 1.07548 1.22795 1.14151 0.88766 0.96922 1.22612 1.00681 0.95978 0.92748 1.70706 1.20259 1.03474 1.25615 1.20737 1.05275 0.94661 0.82482 1.20835 0.96529 0.90597 0.97520 1.22141 0.89626 0.99867 0.90558 1.21836 0.96745 0.94585 1.03299 1.20541 0.91572 0.88085 0.93776 0.95974 0.92706 0.94578 0.93611 0.91315 0.91174 0.90642 0.88792 0.82302 0.81306 0.79804 0.79945 0.82231 0.89744 0.91093 0.91331 0.90251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.70 55.49 0.76 -27.45 16 2 C -0.02 -0.45 5.45 -17.43 -0.10 -0.55 16 3 Si 1.05 26.36 24.65 -169.99 -4.19 22.17 16 4 H -0.29 -6.94 6.43 56.52 0.36 -6.58 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.29 -6.96 6.43 56.52 0.36 -6.60 16 7 C -0.33 -9.09 10.05 -15.06 -0.15 -9.24 16 8 H 0.08 2.32 7.42 -52.49 -0.39 1.93 16 9 N -0.60 -14.16 3.30 -163.27 -0.54 -14.70 16 10 C 0.11 2.26 4.87 -1.91 -0.01 2.25 16 11 C -0.12 -1.89 6.54 -25.13 -0.16 -2.05 16 12 C -0.13 -2.01 2.84 -89.51 -0.25 -2.27 16 13 H 0.08 1.47 8.12 -51.92 -0.42 1.05 16 14 C 0.13 1.72 5.99 -3.72 -0.02 1.70 16 15 N -0.60 -7.89 2.99 -173.60 -0.52 -8.41 16 16 C 0.56 7.59 7.28 -12.42 -0.09 7.50 16 17 O -0.53 -8.62 16.35 5.29 0.09 -8.54 16 18 C -0.11 -1.21 4.96 -104.63 -0.52 -1.73 16 19 C -0.10 -0.89 9.65 -39.54 -0.38 -1.27 16 20 C 0.05 0.38 10.91 -16.68 -0.18 0.20 16 21 N -0.35 -3.43 2.94 -62.75 -0.18 -3.61 16 22 C -0.09 -0.74 11.74 -16.50 -0.19 -0.93 16 23 C 0.03 0.31 11.83 -17.96 -0.21 0.09 16 24 N -0.48 -6.02 11.31 -12.80 -0.14 -6.17 16 25 C 0.21 2.48 7.79 -155.97 -1.22 1.27 16 26 C -0.03 -0.38 7.57 -38.60 -0.29 -0.67 16 27 C 0.10 1.28 4.83 -3.49 -0.02 1.27 16 28 C -0.13 -2.08 5.47 -26.98 -0.15 -2.23 16 29 C 0.17 3.16 2.57 -68.13 -0.18 2.98 16 30 H 0.02 0.43 7.91 -51.93 -0.41 0.02 16 31 H 0.26 8.02 8.73 -40.82 -0.36 7.66 16 32 H 0.04 0.80 4.53 -51.93 -0.24 0.57 16 33 H 0.05 1.04 6.87 -51.93 -0.36 0.68 16 34 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.09 1.28 6.97 -51.93 -0.36 0.91 16 38 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.18 1.08 8.06 -52.48 -0.42 0.65 16 42 H 0.16 1.62 6.77 -52.49 -0.36 1.26 16 43 H 0.08 0.99 5.05 -51.93 -0.26 0.72 16 44 H 0.07 0.81 7.96 -51.93 -0.41 0.40 16 45 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 46 H 0.08 1.40 7.62 -51.92 -0.40 1.00 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -35.09 358.17 -9.66 -44.75 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.21 Total: 0.25 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -4.12 Total: -3.68 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.63 Total: -60.35 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -4.19 Total: 22.17 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.09 -9.66 -44.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036772033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.835 kcal (2) G-P(sol) polarization free energy of solvation -35.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds