Wall clock time and date at job start Sat Apr 11 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48497 * 109.46917 * 270.00528 * 3 2 1 5 5 H 1.48501 * 109.46915 * 30.00255 * 3 2 1 6 6 H 1.48491 * 109.47198 * 150.00329 * 3 2 1 7 7 C 1.38809 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00342 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00303 * 0.02562 * 7 2 1 10 10 C 1.48162 * 126.40102 * 0.02562 * 9 7 2 11 11 C 1.55290 * 107.03913 * 175.07556 * 10 9 7 12 12 C 1.53744 * 101.84762 * 337.52800 * 11 10 9 13 13 H 1.09002 * 111.30635 * 280.14580 * 12 11 10 14 14 C 1.52240 * 114.74313 * 152.74896 * 12 11 10 15 15 N 1.47719 * 106.36403 * 190.42766 * 14 12 11 16 16 C 1.34774 * 119.68167 * 232.03053 * 15 14 12 17 17 O 1.21567 * 120.00010 * 172.00897 * 16 15 14 18 18 C 1.47766 * 120.00328 * 352.01516 * 16 15 14 19 19 N 1.32746 * 120.05211 * 352.08343 * 18 16 15 20 20 C 1.31721 * 122.12914 * 179.71243 * 19 18 16 21 21 C 1.38312 * 121.68877 * 0.59087 * 20 19 18 22 22 C 1.39020 * 119.09040 * 359.70537 * 21 20 19 23 23 N 1.37192 * 134.65141 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.06103 * 0.02562 * 23 22 21 25 25 C 1.36721 * 109.87613 * 179.97438 * 23 22 21 26 26 C 1.34563 * 109.95845 * 0.02562 * 25 23 22 27 27 C 1.40402 * 120.06160 * 172.35709 * 18 16 15 28 28 C 1.46598 * 120.63472 * 52.05964 * 15 14 12 29 29 C 1.53958 * 110.57285 * 312.17139 * 28 15 14 30 30 C 1.45466 * 126.40862 * 179.71348 * 9 7 2 31 31 H 1.08999 * 109.26587 * 93.79435 * 30 9 7 32 32 H 0.96999 * 119.99944 * 359.97438 * 1 2 3 33 33 H 1.08987 * 109.92465 * 294.42586 * 10 9 7 34 34 H 1.09003 * 109.91561 * 55.73641 * 10 9 7 35 35 H 1.09002 * 110.95159 * 95.66330 * 11 10 9 36 36 H 1.08998 * 110.95787 * 219.38363 * 11 10 9 37 37 H 1.09000 * 110.06920 * 309.63890 * 14 12 11 38 38 H 1.08996 * 110.06803 * 71.21833 * 14 12 11 39 39 H 1.07999 * 119.15717 * 180.29573 * 20 19 18 40 40 H 1.07998 * 120.45214 * 179.67712 * 21 20 19 41 41 H 1.08003 * 125.01714 * 180.02562 * 25 23 22 42 42 H 1.08001 * 126.50090 * 180.02562 * 26 25 23 43 43 H 1.09000 * 109.25616 * 72.45801 * 28 15 14 44 44 H 1.09004 * 109.25101 * 191.92652 * 28 15 14 45 45 H 1.08998 * 109.87496 * 170.51385 * 29 28 15 46 46 H 1.08995 * 109.88022 * 291.51971 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3257 -2.3881 -0.0016 10 6 -0.1467 -2.5533 -0.0028 11 6 -0.4338 -4.0741 -0.1312 12 6 0.8692 -4.5889 -0.7643 13 1 0.8868 -4.4058 -1.8387 14 6 1.2014 -6.0405 -0.4474 15 7 2.5834 -6.2636 -0.9189 16 6 2.8507 -7.3026 -1.7346 17 8 3.9501 -7.4097 -2.2424 18 6 1.8075 -8.3118 -2.0118 19 7 0.6627 -8.2862 -1.3403 20 6 -0.2969 -9.1619 -1.5581 21 6 -0.1614 -10.1703 -2.4950 22 6 1.0159 -10.2570 -3.2292 23 7 1.4822 -11.0978 -4.2079 24 1 0.9928 -11.8502 -4.5758 25 6 2.7389 -10.7166 -4.5883 26 6 3.1245 -9.6371 -3.8835 27 6 2.0276 -9.3027 -2.9819 28 6 3.6671 -5.3660 -0.5077 29 6 3.2484 -3.8952 -0.6860 30 6 1.9079 -3.7211 -0.0081 31 1 1.9935 -4.0812 1.0171 32 1 -0.4850 0.8400 0.0004 33 1 -0.5638 -2.1741 0.9300 34 1 -0.5794 -2.0210 -0.8499 35 1 -0.5957 -4.5242 0.8483 36 1 -1.2847 -4.2561 -0.7876 37 1 1.1406 -6.2121 0.6273 38 1 0.5152 -6.7045 -0.9728 39 1 -1.2111 -9.0936 -0.9872 40 1 -0.9591 -10.8808 -2.6537 41 1 3.3341 -11.2092 -5.3430 42 1 4.0671 -9.1169 -3.9694 43 1 3.9059 -5.5474 0.5402 44 1 4.5490 -5.5646 -1.1169 45 1 3.9880 -3.2409 -0.2245 46 1 3.1575 -3.6617 -1.7467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036823352.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:54 Heat of formation + Delta-G solvation = 93.699919 kcal Electronic energy + Delta-G solvation = -29853.886125 eV Core-core repulsion = 25938.755576 eV Total energy + Delta-G solvation = -3915.130549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90580 -40.06270 -38.38422 -37.88475 -35.13099 -32.72494 -32.44848 -31.66282 -30.79930 -29.67645 -29.14751 -27.87655 -25.42504 -24.37813 -23.13180 -22.83262 -22.28355 -21.11728 -20.22674 -19.80666 -19.24997 -18.24685 -17.39191 -16.51879 -16.14987 -15.70454 -15.52547 -15.37232 -14.87204 -14.79893 -14.62726 -14.18720 -13.93747 -13.70691 -13.34761 -13.17910 -13.12596 -12.97135 -12.71903 -12.40120 -12.07769 -11.97846 -11.62050 -11.37051 -11.28309 -10.74434 -10.71990 -10.49336 -10.18623 -10.08483 -10.05154 -9.94873 -9.73247 -9.68875 -9.52272 -9.17833 -8.64924 -8.53819 -8.36439 -8.10032 -6.74042 -5.64071 -2.96253 0.30127 1.20476 2.36699 2.65050 2.82654 3.16106 3.44972 3.50034 3.51605 3.82841 4.07763 4.30526 4.50055 4.56622 4.69653 4.81805 5.05054 5.17079 5.22252 5.23522 5.42595 5.50992 5.57562 5.67695 5.70877 5.74182 5.78747 5.90200 6.02388 6.06484 6.13177 6.27652 6.31317 6.39620 6.39864 6.49319 6.54460 6.63309 6.75297 6.75956 6.80457 7.05314 7.09065 7.22115 7.55599 7.64119 7.70096 7.73689 7.88900 8.32856 8.34037 9.27907 9.91499 10.60410 11.48637 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022157 B = 0.002795 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.383320 B =10014.259117 C =10746.972994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.125 4.125 13 H 0.074 0.926 14 C 0.087 3.913 15 N -0.583 5.583 16 C 0.565 3.435 17 O -0.540 6.540 18 C 0.143 3.857 19 N -0.459 5.459 20 C 0.094 3.906 21 C -0.162 4.162 22 C 0.120 3.880 23 N -0.590 5.590 24 H 0.419 0.581 25 C 0.044 3.956 26 C -0.165 4.165 27 C -0.111 4.111 28 C 0.114 3.886 29 C -0.128 4.128 30 C 0.166 3.834 31 H 0.018 0.982 32 H 0.251 0.749 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.135 0.865 41 H 0.177 0.823 42 H 0.162 0.838 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 -25.622 -6.961 26.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.172 4.172 12 C -0.145 4.145 13 H 0.092 0.908 14 C -0.035 4.035 15 N -0.314 5.314 16 C 0.352 3.648 17 O -0.418 6.418 18 C -0.001 4.001 19 N -0.172 5.172 20 C -0.058 4.058 21 C -0.185 4.185 22 C 0.005 3.995 23 N -0.194 5.194 24 H 0.256 0.744 25 C -0.081 4.081 26 C -0.191 4.191 27 C -0.119 4.119 28 C -0.009 4.009 29 C -0.167 4.167 30 C 0.058 3.942 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.163 0.837 39 H 0.184 0.816 40 H 0.153 0.847 41 H 0.194 0.806 42 H 0.180 0.820 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.093 0.907 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.094 -24.874 -6.616 25.739 hybrid contribution 0.190 0.022 -0.754 0.778 sum 0.096 -24.852 -7.370 25.922 Atomic orbital electron populations 1.69947 1.04845 1.24863 1.57430 1.24777 0.95676 0.97551 1.02607 0.86158 0.78612 0.83764 0.77500 1.21735 1.21776 1.20744 1.19019 0.90381 0.82399 1.43169 0.90431 1.44227 1.01690 0.99534 1.86512 1.21518 0.83944 0.88467 1.00769 1.22674 0.95758 0.99496 0.99264 1.22603 0.97503 0.94221 1.00181 0.90760 1.23080 0.81894 0.97767 1.00735 1.48182 1.10588 1.26188 1.46397 1.17800 0.86444 0.81363 0.79232 1.90723 1.23591 1.76350 1.51126 1.20765 0.92284 0.94189 0.92844 1.67756 1.00722 1.23337 1.25374 1.22599 0.98009 0.89872 0.95332 1.21163 0.96034 1.02348 0.98929 1.18283 0.95577 0.92702 0.92936 1.41651 1.15610 1.28180 1.33925 0.74397 1.22096 0.85903 0.98465 1.01615 1.21954 1.00095 0.98751 0.98265 1.19802 0.95863 0.96715 0.99547 1.21695 0.89776 0.89609 0.99828 1.21824 0.99275 0.93693 1.01904 1.20534 0.91355 0.87084 0.95236 0.96505 0.93883 0.94482 0.92923 0.92350 0.92267 0.91730 0.83689 0.81621 0.84723 0.80560 0.81999 0.91867 0.89410 0.90707 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 10.44 55.49 0.58 -26.93 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -6.21 9.88 -15.06 -0.15 -6.36 16 8 H 0.08 2.10 7.21 -52.48 -0.38 1.72 16 9 N -0.60 -15.38 3.35 -163.46 -0.55 -15.92 16 10 C 0.18 4.37 5.45 -1.91 -0.01 4.36 16 11 C -0.13 -2.52 6.54 -25.13 -0.16 -2.68 16 12 C -0.12 -2.32 2.85 -89.54 -0.26 -2.58 16 13 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 14 C 0.09 1.38 5.34 -3.76 -0.02 1.36 16 15 N -0.58 -9.66 3.00 -173.63 -0.52 -10.18 16 16 C 0.57 9.45 7.62 -12.37 -0.09 9.36 16 17 O -0.54 -9.88 14.54 5.31 0.08 -9.80 16 18 C 0.14 2.08 6.61 -82.76 -0.55 1.53 16 19 N -0.46 -5.87 6.02 -9.66 -0.06 -5.93 16 20 C 0.09 0.89 11.13 -17.57 -0.20 0.70 16 21 C -0.16 -1.33 10.14 -39.26 -0.40 -1.72 16 22 C 0.12 1.18 7.34 -84.03 -0.62 0.56 16 23 N -0.59 -4.01 6.05 -10.59 -0.06 -4.08 16 24 H 0.42 1.33 8.96 -40.82 -0.37 0.96 16 25 C 0.04 0.33 11.82 -16.67 -0.20 0.13 16 26 C -0.17 -1.86 10.27 -37.83 -0.39 -2.25 16 27 C -0.11 -1.43 6.15 -104.88 -0.64 -2.08 16 28 C 0.11 1.88 6.34 -3.49 -0.02 1.86 16 29 C -0.13 -2.43 5.48 -27.13 -0.15 -2.58 16 30 C 0.17 3.52 2.55 -68.30 -0.17 3.35 16 31 H 0.02 0.38 7.89 -51.93 -0.41 -0.03 16 32 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.04 0.99 7.77 -51.94 -0.40 0.59 16 34 H 0.05 1.44 7.21 -51.93 -0.37 1.06 16 35 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 38 H 0.15 2.16 4.04 -86.82 -0.35 1.81 16 39 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.18 0.61 8.06 -52.48 -0.42 0.19 16 42 H 0.16 1.94 7.26 -52.49 -0.38 1.56 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.09 1.44 6.92 -51.93 -0.36 1.08 16 45 H 0.07 1.43 7.62 -51.93 -0.40 1.03 16 46 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -34.75 361.40 -10.59 -45.33 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.35 Total: 2.02 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.12 Total: 2.55 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.61 Total: -63.05 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.75 -10.59 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036823352.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.034 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds