Wall clock time and date at job start Sat Apr 11 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38903 * 119.74138 * 2 1 4 4 C 1.36685 * 120.89614 * 180.02562 * 3 2 1 5 5 C 1.39115 * 119.78573 * 359.97438 * 4 3 2 6 6 N 1.37050 * 134.72873 * 179.97438 * 5 4 3 7 7 H 0.97002 * 124.36775 * 0.02562 * 6 5 4 8 8 N 1.28383 * 111.25942 * 179.72170 * 6 5 4 9 9 C 1.31577 * 111.96507 * 0.47773 * 8 6 5 10 10 C 1.47384 * 126.82463 * 179.80792 * 9 8 6 11 11 O 1.21619 * 119.99733 * 179.69303 * 10 9 8 12 12 N 1.34779 * 120.00399 * 359.68356 * 10 9 8 13 13 C 1.47346 * 125.51659 * 0.03005 * 12 10 9 14 14 C 1.54860 * 104.90363 * 156.70641 * 13 12 10 15 15 C 1.54784 * 101.41862 * 37.27358 * 14 13 12 16 16 H 1.09006 * 113.40287 * 85.76078 * 15 14 13 17 17 C 1.53515 * 109.68354 * 212.86984 * 15 14 13 18 18 N 1.46654 * 107.04931 * 84.08984 * 17 15 14 19 19 C 1.36932 * 125.29109 * 197.35876 * 18 17 15 20 20 H 1.08001 * 120.00139 * 0.05381 * 19 18 17 21 21 C 1.38809 * 119.99912 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00420 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99824 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47110 * 90.00233 * 23 21 19 25 25 H 1.48500 * 109.47152 * 209.99662 * 23 21 19 26 26 H 1.48499 * 109.47483 * 329.99752 * 23 21 19 27 27 C 1.46495 * 109.42081 * 17.38481 * 18 17 15 28 28 C 1.47250 * 125.52526 * 180.02562 * 12 10 9 29 29 H 1.08996 * 112.73273 * 56.17468 * 28 12 10 30 30 C 1.40867 * 119.22625 * 0.02562 * 5 4 3 31 31 C 1.36712 * 119.73843 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47547 * 269.98150 * 1 2 3 33 33 H 1.09007 * 109.47123 * 29.98602 * 1 2 3 34 34 H 1.09004 * 109.46958 * 149.98233 * 1 2 3 35 35 H 1.07997 * 119.54708 * 359.97438 * 3 2 1 36 36 H 1.08001 * 120.10413 * 179.97438 * 4 3 2 37 37 H 1.09000 * 110.35579 * 275.57238 * 13 12 10 38 38 H 1.09001 * 110.35394 * 37.75501 * 13 12 10 39 39 H 1.09000 * 111.08611 * 279.22111 * 14 13 12 40 40 H 1.08996 * 110.99755 * 155.29035 * 14 13 12 41 41 H 1.08997 * 109.92419 * 324.74273 * 17 15 14 42 42 H 1.09000 * 109.92120 * 203.44008 * 17 15 14 43 43 H 0.96999 * 120.00413 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.71712 * 117.76499 * 27 18 17 45 45 H 1.09001 * 109.71175 * 238.36286 * 27 18 17 46 46 H 1.07998 * 120.24875 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2061 0.0000 4 6 3.5626 1.2336 -0.0005 5 6 4.2779 0.0404 -0.0005 6 7 5.6089 -0.2862 -0.0014 7 1 6.3315 0.3609 -0.0019 8 7 5.7758 -1.5591 0.0049 9 6 4.6299 -2.2058 0.0002 10 6 4.4405 -3.6674 0.0011 11 8 3.3178 -4.1350 0.0020 12 7 5.5113 -4.4859 0.0006 13 6 6.9197 -4.0528 -0.0001 14 6 7.7046 -5.2495 0.5914 15 6 6.9351 -6.4492 -0.0123 16 1 7.2822 -6.7301 -1.0067 17 6 6.9496 -7.6233 0.9767 18 7 5.8490 -7.4038 1.9208 19 6 5.7168 -8.0170 3.1380 20 1 6.4610 -8.7261 3.4691 21 6 4.6264 -7.7268 3.9465 22 7 3.7194 -6.8627 3.5430 23 14 4.4464 -8.5629 5.6072 24 1 5.1205 -7.7461 6.6483 25 1 3.0054 -8.6975 5.9401 26 1 5.0699 -9.9095 5.5538 27 6 4.9128 -6.4271 1.3591 28 6 5.4634 -5.9576 0.0008 29 1 4.8899 -6.3604 -0.8340 30 6 3.5771 -1.1816 -0.0005 31 6 2.1851 -1.1871 -0.0005 32 1 -0.3634 -0.0003 1.0276 33 1 -0.3634 0.8902 -0.5136 34 1 -0.3633 -0.8899 -0.5141 35 1 1.6445 2.1346 -0.0004 36 1 4.0854 2.1787 -0.0009 37 1 7.2524 -3.8465 -1.0173 38 1 7.0449 -3.1690 0.6256 39 1 7.6480 -5.2562 1.6799 40 1 8.7415 -5.2408 0.2555 41 1 7.8988 -7.6464 1.5119 42 1 6.7988 -8.5611 0.4420 43 1 2.9576 -6.6596 4.1082 44 1 3.9367 -6.8916 1.2193 45 1 4.8216 -5.5754 2.0332 46 1 1.6449 -2.1222 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075985866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:09 Heat of formation + Delta-G solvation = 94.974060 kcal Electronic energy + Delta-G solvation = -29835.304610 eV Core-core repulsion = 25920.229312 eV Total energy + Delta-G solvation = -3915.075298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.48622 -39.86351 -38.20872 -37.60183 -34.82153 -32.83424 -32.14167 -31.81291 -30.59182 -30.01920 -28.51467 -27.07728 -26.61031 -24.55738 -23.87308 -23.08273 -22.01892 -21.63018 -20.33919 -19.45190 -18.71355 -18.02711 -17.36046 -16.75021 -16.12184 -15.80277 -15.39369 -15.21811 -15.11503 -14.43609 -14.11598 -14.01167 -13.78514 -13.63568 -13.49750 -13.34921 -12.67245 -12.60251 -12.28479 -12.13460 -11.97694 -11.72702 -11.65481 -11.47241 -11.23943 -11.08062 -10.94223 -10.85005 -10.72111 -10.34897 -10.15636 -10.06752 -9.95221 -9.79092 -9.64883 -9.59454 -8.76313 -8.51192 -8.17985 -7.97937 -6.73228 -5.59813 -2.96453 0.79367 1.26813 1.98291 2.61906 3.29451 3.45436 3.47727 3.49861 3.52836 3.82420 4.30066 4.41746 4.56742 4.65625 4.76150 4.91512 5.00345 5.05660 5.26696 5.32726 5.35852 5.48107 5.53441 5.56661 5.58178 5.66154 5.74945 5.87623 5.91404 5.94168 6.00478 6.02594 6.11405 6.16894 6.26157 6.34485 6.48895 6.52770 6.67148 6.68599 6.69389 6.76684 6.92598 6.96847 7.64855 7.69755 7.78056 7.98575 8.02406 8.37941 8.60534 9.31258 9.92250 10.55406 11.49499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003458 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.482405 B = 8094.254033 C = 9451.465844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.112 4.112 3 C -0.082 4.082 4 C -0.121 4.121 5 C 0.060 3.940 6 N -0.422 5.422 7 H 0.444 0.556 8 N -0.208 5.208 9 C 0.023 3.977 10 C 0.612 3.388 11 O -0.518 6.518 12 N -0.592 5.592 13 C 0.105 3.895 14 C -0.122 4.122 15 C -0.111 4.111 16 H 0.088 0.912 17 C 0.145 3.855 18 N -0.602 5.602 19 C -0.234 4.234 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.913 5.913 23 Si 0.910 3.090 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.179 3.821 28 C 0.115 3.885 29 H 0.083 0.917 30 C -0.104 4.104 31 C -0.039 4.039 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 17.903 -10.942 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.103 4.103 4 C -0.142 4.142 5 C -0.053 4.053 6 N -0.140 5.140 7 H 0.289 0.711 8 N -0.038 5.038 9 C -0.148 4.148 10 C 0.397 3.603 11 O -0.391 6.391 12 N -0.325 5.325 13 C -0.018 4.018 14 C -0.160 4.160 15 C -0.131 4.131 16 H 0.106 0.894 17 C 0.019 3.981 18 N -0.329 5.329 19 C -0.362 4.362 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.560 5.560 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.054 3.946 28 C 0.012 3.988 29 H 0.101 0.899 30 C -0.112 4.112 31 C -0.059 4.059 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.212 17.495 -10.762 20.789 hybrid contribution -0.351 0.237 0.950 1.040 sum 2.860 17.731 -9.812 20.466 Atomic orbital electron populations 1.20750 0.90662 1.02772 1.02490 1.19569 0.96512 0.92489 1.02784 1.20594 0.93040 0.97829 0.98814 1.19694 0.93784 0.94548 1.06204 1.19179 0.84989 0.96085 1.05057 1.43056 1.05850 1.04330 1.60784 0.71122 1.73036 1.25895 0.91151 1.13674 1.22890 0.88072 0.94435 1.09435 1.16207 0.84050 0.82307 0.77692 1.90837 1.22812 1.75314 1.50164 1.48319 1.05702 1.06927 1.71571 1.22402 0.80533 0.98344 1.00538 1.22753 0.97909 0.93286 1.02008 1.22961 0.94385 0.96557 0.99203 0.89354 1.21070 0.92669 0.93866 0.90541 1.44136 1.22719 1.48987 1.17083 1.18993 1.06310 1.19054 0.91830 0.90414 1.24838 0.97247 0.99420 0.98746 1.70004 1.12919 1.36274 1.36801 0.86160 0.76968 0.78836 0.84016 1.21718 1.21683 1.20704 1.21286 0.92235 0.93304 0.87794 1.22890 0.96665 0.77912 1.01368 0.89912 1.19392 0.94252 0.90548 1.06972 1.20335 0.91270 0.98837 0.95435 0.91132 0.91708 0.91249 0.85305 0.85566 0.92027 0.89685 0.89620 0.90609 0.94368 0.96568 0.93687 0.93613 0.92594 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.99 36.00 0.36 -0.62 16 2 C -0.11 -1.29 5.85 -104.93 -0.61 -1.90 16 3 C -0.08 -0.79 9.60 -39.90 -0.38 -1.17 16 4 C -0.12 -1.17 10.03 -39.82 -0.40 -1.57 16 5 C 0.06 0.75 7.38 -84.21 -0.62 0.12 16 6 N -0.42 -4.72 6.85 32.34 0.22 -4.50 16 7 H 0.44 3.05 8.96 -190.49 -1.71 1.34 16 8 N -0.21 -3.00 9.24 34.46 0.32 -2.68 16 9 C 0.02 0.41 7.15 -80.76 -0.58 -0.17 16 10 C 0.61 12.46 7.56 -12.54 -0.09 12.37 16 11 O -0.52 -12.13 16.49 5.26 0.09 -12.05 16 12 N -0.59 -11.29 2.83 -163.17 -0.46 -11.75 16 13 C 0.10 1.61 6.12 -2.60 -0.02 1.59 16 14 C -0.12 -1.88 6.32 -24.81 -0.16 -2.04 16 15 C -0.11 -1.91 3.97 -88.26 -0.35 -2.26 16 16 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.15 2.98 6.50 -3.69 -0.02 2.96 16 18 N -0.60 -15.74 3.37 -172.25 -0.58 -16.32 16 19 C -0.23 -6.65 10.25 -15.06 -0.15 -6.81 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 22 N -0.91 -28.26 10.23 55.49 0.57 -27.69 16 23 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.18 4.66 4.62 -3.58 -0.02 4.65 16 28 C 0.11 2.35 3.81 -65.90 -0.25 2.10 16 29 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 30 C -0.10 -1.65 6.34 -105.05 -0.67 -2.31 16 31 C -0.04 -0.57 9.50 -39.78 -0.38 -0.94 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.29 6.24 -51.93 -0.32 0.97 16 39 H 0.09 1.58 7.93 -51.93 -0.41 1.17 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.65 8.31 -40.82 -0.34 7.32 16 44 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 45 H 0.06 1.66 6.89 -51.93 -0.36 1.30 16 46 H 0.14 2.21 7.65 -52.49 -0.40 1.81 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -35.58 370.76 -11.50 -47.08 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.77 Total: 0.85 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -4.44 Total: 3.74 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.07 Total: -62.94 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.58 -11.50 -47.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075985866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.053 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds