Wall clock time and date at job start Sat Apr 11 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38903 * 119.74138 * 2 1 4 4 C 1.36685 * 120.89614 * 180.02562 * 3 2 1 5 5 C 1.39115 * 119.78573 * 359.97438 * 4 3 2 6 6 N 1.37050 * 134.72873 * 179.97438 * 5 4 3 7 7 H 0.97002 * 124.36775 * 0.02562 * 6 5 4 8 8 N 1.28383 * 111.25942 * 179.72170 * 6 5 4 9 9 C 1.31577 * 111.96507 * 0.47773 * 8 6 5 10 10 C 1.47384 * 126.82463 * 179.80792 * 9 8 6 11 11 O 1.21619 * 119.99733 * 179.69303 * 10 9 8 12 12 N 1.34779 * 120.00399 * 359.68356 * 10 9 8 13 13 C 1.47346 * 125.51659 * 0.03005 * 12 10 9 14 14 C 1.54860 * 104.90363 * 156.70641 * 13 12 10 15 15 C 1.54784 * 101.41862 * 37.27358 * 14 13 12 16 16 H 1.09006 * 113.40287 * 85.76078 * 15 14 13 17 17 C 1.53515 * 109.68354 * 212.86984 * 15 14 13 18 18 N 1.46654 * 107.04931 * 84.08984 * 17 15 14 19 19 C 1.36932 * 125.29109 * 197.35876 * 18 17 15 20 20 H 1.08001 * 120.00139 * 0.05381 * 19 18 17 21 21 C 1.38809 * 119.99912 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00420 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99824 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47110 * 90.00233 * 23 21 19 25 25 H 1.48500 * 109.47152 * 209.99662 * 23 21 19 26 26 H 1.48499 * 109.47483 * 329.99752 * 23 21 19 27 27 C 1.46495 * 109.42081 * 17.38481 * 18 17 15 28 28 C 1.47250 * 125.52526 * 180.02562 * 12 10 9 29 29 H 1.08996 * 112.73273 * 56.17468 * 28 12 10 30 30 C 1.40867 * 119.22625 * 0.02562 * 5 4 3 31 31 C 1.36712 * 119.73843 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47547 * 269.98150 * 1 2 3 33 33 H 1.09007 * 109.47123 * 29.98602 * 1 2 3 34 34 H 1.09004 * 109.46958 * 149.98233 * 1 2 3 35 35 H 1.07997 * 119.54708 * 359.97438 * 3 2 1 36 36 H 1.08001 * 120.10413 * 179.97438 * 4 3 2 37 37 H 1.09000 * 110.35579 * 275.57238 * 13 12 10 38 38 H 1.09001 * 110.35394 * 37.75501 * 13 12 10 39 39 H 1.09000 * 111.08611 * 279.22111 * 14 13 12 40 40 H 1.08996 * 110.99755 * 155.29035 * 14 13 12 41 41 H 1.08997 * 109.92419 * 324.74273 * 17 15 14 42 42 H 1.09000 * 109.92120 * 203.44008 * 17 15 14 43 43 H 0.96999 * 120.00413 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.71712 * 117.76499 * 27 18 17 45 45 H 1.09001 * 109.71175 * 238.36286 * 27 18 17 46 46 H 1.07998 * 120.24875 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2061 0.0000 4 6 3.5626 1.2336 -0.0005 5 6 4.2779 0.0404 -0.0005 6 7 5.6089 -0.2862 -0.0014 7 1 6.3315 0.3609 -0.0019 8 7 5.7758 -1.5591 0.0049 9 6 4.6299 -2.2058 0.0002 10 6 4.4405 -3.6674 0.0011 11 8 3.3178 -4.1350 0.0020 12 7 5.5113 -4.4859 0.0006 13 6 6.9197 -4.0528 -0.0001 14 6 7.7046 -5.2495 0.5914 15 6 6.9351 -6.4492 -0.0123 16 1 7.2822 -6.7301 -1.0067 17 6 6.9496 -7.6233 0.9767 18 7 5.8490 -7.4038 1.9208 19 6 5.7168 -8.0170 3.1380 20 1 6.4610 -8.7261 3.4691 21 6 4.6264 -7.7268 3.9465 22 7 3.7194 -6.8627 3.5430 23 14 4.4464 -8.5629 5.6072 24 1 5.1205 -7.7461 6.6483 25 1 3.0054 -8.6975 5.9401 26 1 5.0699 -9.9095 5.5538 27 6 4.9128 -6.4271 1.3591 28 6 5.4634 -5.9576 0.0008 29 1 4.8899 -6.3604 -0.8340 30 6 3.5771 -1.1816 -0.0005 31 6 2.1851 -1.1871 -0.0005 32 1 -0.3634 -0.0003 1.0276 33 1 -0.3634 0.8902 -0.5136 34 1 -0.3633 -0.8899 -0.5141 35 1 1.6445 2.1346 -0.0004 36 1 4.0854 2.1787 -0.0009 37 1 7.2524 -3.8465 -1.0173 38 1 7.0449 -3.1690 0.6256 39 1 7.6480 -5.2562 1.6799 40 1 8.7415 -5.2408 0.2555 41 1 7.8988 -7.6464 1.5119 42 1 6.7988 -8.5611 0.4420 43 1 2.9576 -6.6596 4.1082 44 1 3.9367 -6.8916 1.2193 45 1 4.8216 -5.5754 2.0332 46 1 1.6449 -2.1222 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075985866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:06 Heat of formation + Delta-G solvation = 70.774121 kcal Electronic energy + Delta-G solvation = -29836.353998 eV Core-core repulsion = 25920.229312 eV Total energy + Delta-G solvation = -3916.124686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -43.53829 -41.41633 -39.24357 -39.12495 -36.62796 -34.25131 -33.61427 -32.81850 -32.25698 -31.13292 -30.23824 -28.50110 -27.79113 -26.53934 -25.27153 -24.04031 -23.32112 -22.64321 -22.17701 -20.91093 -20.13292 -19.10877 -18.94315 -18.47369 -17.46404 -16.94073 -16.91860 -16.61960 -16.25618 -16.15922 -15.59615 -15.26252 -15.11350 -14.97346 -14.71515 -14.43293 -14.36836 -14.17104 -13.73674 -13.37585 -13.25987 -13.04491 -12.95157 -12.81858 -12.72054 -12.63342 -12.57428 -12.28316 -12.14620 -11.99262 -11.86084 -11.70597 -11.49910 -11.43112 -11.18351 -11.17759 -10.72557 -9.69980 -9.69470 -9.01283 -8.90312 -7.83617 -5.23344 -0.25906 0.31609 0.83134 1.41222 1.44862 1.53926 1.60978 1.97891 2.20591 2.47965 2.73031 3.09701 3.32729 3.44569 3.45817 3.65699 3.70698 3.78852 3.96099 4.01291 4.16906 4.26845 4.33346 4.37381 4.42836 4.49058 4.54304 4.62846 4.75269 4.78553 4.86856 4.87298 4.96564 5.02896 5.10124 5.17141 5.19557 5.21231 5.23873 5.36122 5.44755 5.50297 5.58204 5.64793 5.78799 5.83728 6.10776 6.18463 6.48729 6.70011 7.05348 7.11005 7.78192 8.39737 9.24446 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012505 B = 0.003458 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.482405 B = 8094.254033 C = 9451.465844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.081 4.081 4 C -0.100 4.100 5 C 0.054 3.946 6 N -0.391 5.391 7 H 0.466 0.534 8 N -0.191 5.191 9 C -0.025 4.025 10 C 0.601 3.399 11 O -0.572 6.572 12 N -0.596 5.596 13 C 0.106 3.894 14 C -0.112 4.112 15 C -0.091 4.091 16 H 0.138 0.862 17 C 0.137 3.863 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.092 0.908 21 C -0.073 4.073 22 N -0.953 5.953 23 Si 0.981 3.019 24 H -0.285 1.285 25 H -0.299 1.299 26 H -0.261 1.261 27 C 0.203 3.797 28 C 0.116 3.884 29 H 0.080 0.920 30 C -0.135 4.135 31 C -0.086 4.086 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.173 0.827 36 H 0.174 0.826 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.027 0.973 43 H 0.241 0.759 44 H -0.015 1.015 45 H 0.007 0.993 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 21.003 -12.013 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.102 4.102 4 C -0.121 4.121 5 C -0.059 4.059 6 N -0.114 5.114 7 H 0.316 0.684 8 N -0.023 5.023 9 C -0.194 4.194 10 C 0.389 3.611 11 O -0.450 6.450 12 N -0.328 5.328 13 C -0.016 4.016 14 C -0.150 4.150 15 C -0.110 4.110 16 H 0.155 0.845 17 C 0.012 3.988 18 N -0.350 5.350 19 C -0.370 4.370 20 H 0.110 0.890 21 C -0.265 4.265 22 N -0.602 5.602 23 Si 0.809 3.191 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.185 1.185 27 C 0.077 3.923 28 C 0.012 3.988 29 H 0.098 0.902 30 C -0.142 4.142 31 C -0.106 4.106 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.191 0.809 36 H 0.192 0.808 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.145 0.855 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.004 0.996 45 H 0.025 0.975 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.322 20.593 -11.857 24.589 hybrid contribution -1.299 -0.619 1.271 1.919 sum 5.023 19.974 -10.586 23.157 Atomic orbital electron populations 1.20839 0.89084 1.03812 1.03088 1.19949 0.97831 0.92194 1.00170 1.21099 0.93397 0.98303 0.97354 1.20280 0.93866 0.95065 1.02882 1.19410 0.84913 0.95882 1.05709 1.43121 1.06497 1.03683 1.58120 0.68397 1.72878 1.24651 0.92418 1.12399 1.22390 0.89936 0.93031 1.14052 1.16782 0.83611 0.83995 0.76676 1.90784 1.24891 1.76673 1.52615 1.48426 1.07268 1.06088 1.71010 1.22647 0.78049 0.98310 1.02557 1.22749 1.00430 0.92099 0.99739 1.23040 0.91707 0.95493 1.00800 0.84450 1.21362 0.91285 0.95734 0.90440 1.44447 1.24335 1.48691 1.17491 1.19512 1.06133 1.18640 0.92711 0.89044 1.25800 0.97241 1.00558 1.02910 1.70327 1.13451 1.38459 1.37982 0.85039 0.76305 0.78582 0.79189 1.21162 1.22620 1.18530 1.20758 0.90474 0.91084 0.90016 1.22676 0.99185 0.79409 0.97528 0.90203 1.19652 0.94753 0.91712 1.08054 1.20266 0.91524 0.99063 0.99784 0.90634 0.88556 0.92335 0.80947 0.80814 0.88543 0.89615 0.93273 0.85534 0.92694 0.95564 0.94933 0.99638 0.97523 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 9.99 71.23 0.71 -1.20 16 2 C -0.10 -2.26 5.85 -20.06 -0.12 -2.38 16 3 C -0.08 -1.26 9.60 22.07 0.21 -1.05 16 4 C -0.10 -1.52 10.03 22.12 0.22 -1.30 16 5 C 0.05 1.25 7.38 39.18 0.29 1.54 16 6 N -0.39 -7.85 6.85 -51.60 -0.35 -8.20 16 7 H 0.47 4.62 8.96 -220.03 -1.97 2.65 16 8 N -0.19 -5.39 9.24 -44.88 -0.41 -5.80 16 9 C -0.03 -0.93 7.15 43.86 0.31 -0.62 16 10 C 0.60 26.86 7.56 86.65 0.65 27.51 16 11 O -0.57 -30.46 16.49 -4.09 -0.07 -30.53 16 12 N -0.60 -23.83 2.83 -788.39 -2.23 -26.06 16 13 C 0.11 3.09 6.12 86.85 0.53 3.62 16 14 C -0.11 -3.20 6.32 31.84 0.20 -3.00 16 15 C -0.09 -2.95 3.97 -9.27 -0.04 -2.99 16 16 H 0.14 3.24 8.14 -2.38 -0.02 3.22 16 17 C 0.14 5.50 6.50 86.52 0.56 6.06 16 18 N -0.62 -33.91 3.37 -698.88 -2.36 -36.27 16 19 C -0.24 -14.17 10.25 84.03 0.86 -13.31 16 20 H 0.09 4.99 7.83 -2.91 -0.02 4.97 16 21 C -0.07 -4.43 5.48 84.86 0.47 -3.97 16 22 N -0.95 -63.82 10.23 21.65 0.22 -63.60 16 23 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 24 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 27 C 0.20 11.49 4.62 86.68 0.40 11.89 16 28 C 0.12 4.98 3.81 45.90 0.17 5.15 16 29 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 30 C -0.13 -4.47 6.34 -20.14 -0.13 -4.59 16 31 C -0.09 -2.77 9.50 22.14 0.21 -2.56 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 1.05 8.08 -2.38 -0.02 1.03 16 34 H 0.06 1.12 8.08 -2.38 -0.02 1.10 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.09 2.52 6.24 -2.39 -0.01 2.50 16 39 H 0.05 1.78 7.93 -2.39 -0.02 1.76 16 40 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.05 2.05 7.95 -2.39 -0.02 2.03 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.24 15.91 8.31 -92.71 -0.77 15.14 16 44 H -0.01 -0.98 7.51 -2.39 -0.02 -1.00 16 45 H 0.01 0.43 6.89 -2.39 -0.02 0.41 16 46 H 0.10 3.97 7.65 -2.91 -0.02 3.95 16 Total: -1.00 -90.89 370.76 1.40 -89.50 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.96 Total: 11.51 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 5.53 Total: 18.80 kcal Atomic # 7 Polarization: -134.80 SS G_CDS: -5.13 Total: -139.94 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.07 Total: -30.53 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -90.89 1.40 -89.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075985866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.271 kcal (2) G-P(sol) polarization free energy of solvation -90.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds