Wall clock time and date at job start Sat Apr 11 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39735 * 119.42652 * 2 1 4 4 C 1.38946 * 119.29305 * 179.97438 * 3 2 1 5 5 C 1.47225 * 120.85858 * 179.97438 * 4 3 2 6 6 O 1.21636 * 119.99648 * 184.94875 * 5 4 3 7 7 N 1.34774 * 120.00397 * 4.94852 * 5 4 3 8 8 C 1.47348 * 125.52755 * 172.96861 * 7 5 4 9 9 C 1.54942 * 104.88870 * 156.54173 * 8 7 5 10 10 C 1.54778 * 101.49195 * 37.21831 * 9 8 7 11 11 H 1.08996 * 113.12269 * 85.60556 * 10 9 8 12 12 C 1.53268 * 109.75714 * 212.26742 * 10 9 8 13 13 N 1.46578 * 108.14216 * 95.79136 * 12 10 9 14 14 C 1.36935 * 125.31072 * 177.89691 * 13 12 10 15 15 H 1.08005 * 119.99454 * 353.50382 * 14 13 12 16 16 C 1.38813 * 120.00348 * 173.50296 * 14 13 12 17 17 N 1.31616 * 119.99612 * 4.65701 * 16 14 13 18 18 Si 1.86794 * 119.99805 * 184.65764 * 16 14 13 19 19 H 1.48501 * 109.47144 * 94.99839 * 18 16 14 20 20 H 1.48503 * 109.47164 * 214.99430 * 18 16 14 21 21 H 1.48503 * 109.47619 * 334.99923 * 18 16 14 22 22 C 1.46614 * 109.38496 * 357.89578 * 13 12 10 23 23 C 1.47217 * 125.53017 * 352.96979 * 7 5 4 24 24 H 1.09002 * 112.28278 * 55.66600 * 23 7 5 25 25 C 1.46550 * 118.27516 * 0.25719 * 4 3 2 26 26 N 1.31983 * 132.71126 * 179.74641 * 25 4 3 27 27 C 1.33744 * 109.16531 * 179.97438 * 26 25 4 28 28 C 1.34958 * 108.60467 * 359.53939 * 27 26 25 29 29 N 1.37001 * 107.15399 * 0.51326 * 28 27 26 30 30 C 1.35106 * 119.42387 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47362 * 89.99676 * 1 2 3 32 32 H 1.09001 * 109.46997 * 209.99834 * 1 2 3 33 33 H 1.08997 * 109.46962 * 329.99405 * 1 2 3 34 34 H 1.08002 * 120.35455 * 0.02562 * 3 2 1 35 35 H 1.09003 * 110.35651 * 275.39636 * 8 7 5 36 36 H 1.08998 * 110.35862 * 37.58237 * 8 7 5 37 37 H 1.09002 * 111.01674 * 155.28847 * 9 8 7 38 38 H 1.09001 * 111.02116 * 279.17764 * 9 8 7 39 39 H 1.08997 * 109.73538 * 336.10935 * 12 10 9 40 40 H 1.09000 * 109.73192 * 215.46499 * 12 10 9 41 41 H 0.97006 * 119.99725 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.91210 * 137.17087 * 22 13 12 43 43 H 1.09002 * 109.91248 * 258.45185 * 22 13 12 44 44 H 1.07998 * 125.69330 * 180.02562 * 27 26 25 45 45 H 1.08004 * 126.42386 * 179.97438 * 28 27 26 46 46 H 1.07994 * 119.14447 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1936 1.2171 0.0000 4 6 3.5830 1.2138 0.0005 5 6 4.3411 2.4759 0.0000 6 8 5.5540 2.4567 -0.0904 7 7 3.6913 3.6524 0.0996 8 6 4.3283 4.9717 0.2579 9 6 3.2828 5.9848 -0.2725 10 6 1.9602 5.3491 0.2196 11 1 1.7026 5.6328 1.2400 12 6 0.8366 5.6535 -0.7774 13 7 0.7119 4.5111 -1.6872 14 6 -0.2130 4.3955 -2.6904 15 1 -0.9926 5.1358 -2.7940 16 6 -0.1486 3.3270 -3.5742 17 7 0.7440 2.3767 -3.3937 18 14 -1.3286 3.2380 -5.0195 19 1 -0.6799 3.8149 -6.2244 20 1 -1.6856 1.8204 -5.2805 21 1 -2.5583 4.0080 -4.7029 22 6 1.7317 3.5113 -1.3557 23 6 2.2300 3.8281 0.0681 24 1 1.7254 3.2299 0.8268 25 6 4.2743 -0.0784 -0.0047 26 7 5.5516 -0.4104 -0.0099 27 6 5.6588 -1.7435 -0.0126 28 6 4.4185 -2.2752 0.0012 29 7 3.5313 -1.2313 0.0010 30 6 2.1708 -1.1768 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6500 2.1503 0.0004 35 1 4.5444 5.1648 1.3087 36 1 5.2431 5.0243 -0.3325 37 1 3.4326 6.9692 0.1708 38 1 3.3088 6.0398 -1.3608 39 1 1.0815 6.5512 -1.3450 40 1 -0.1009 5.8014 -0.2414 41 1 0.7892 1.6302 -4.0115 42 1 1.2954 2.5128 -1.3828 43 1 2.5594 3.5770 -2.0620 44 1 6.5836 -2.3013 -0.0165 45 1 4.1714 -3.3266 0.0025 46 1 1.6076 -2.0983 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076084831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:24 Heat of formation + Delta-G solvation = 137.258695 kcal Electronic energy + Delta-G solvation = -31142.776975 eV Core-core repulsion = 27229.535277 eV Total energy + Delta-G solvation = -3913.241699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.47151 -40.42661 -37.82484 -37.44313 -34.86345 -33.61698 -32.34570 -31.86030 -30.85506 -29.07810 -28.17412 -27.16541 -26.49789 -24.63434 -24.35193 -22.66646 -21.65920 -21.30027 -20.69114 -19.87361 -19.01378 -17.78336 -17.42762 -16.90575 -15.90318 -15.64744 -15.58757 -15.04092 -14.70372 -14.61027 -14.18539 -13.92038 -13.77003 -13.44691 -13.38559 -13.25014 -13.00260 -12.70542 -12.36917 -12.25673 -12.10484 -12.02095 -11.72689 -11.37900 -11.19529 -11.18771 -11.03923 -10.75257 -10.48289 -10.43385 -10.28243 -10.10266 -9.90214 -9.82492 -9.79664 -9.38730 -8.74512 -8.44360 -8.22599 -7.61820 -6.96032 -5.83430 -3.21197 0.59892 1.54266 2.68634 2.99302 3.20120 3.31253 3.32503 3.38174 3.39744 3.99444 4.36913 4.37763 4.47143 4.71116 4.72291 4.79434 4.92070 5.14648 5.17839 5.33671 5.36968 5.44426 5.48564 5.53491 5.59753 5.63267 5.67642 5.71611 5.84005 5.84794 5.98617 6.00907 6.06652 6.09644 6.20350 6.26090 6.32839 6.44469 6.56630 6.58475 6.68853 6.79115 6.82618 7.20489 7.24072 7.42646 7.62486 7.89059 8.12693 8.19092 8.60444 9.06869 9.67906 10.30161 11.24110 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.005307 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.874214 B = 5274.359236 C = 7047.186842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.102 4.102 3 C -0.073 4.073 4 C -0.100 4.100 5 C 0.585 3.415 6 O -0.518 6.518 7 N -0.605 5.605 8 C 0.112 3.888 9 C -0.123 4.123 10 C -0.105 4.105 11 H 0.092 0.908 12 C 0.142 3.858 13 N -0.598 5.598 14 C -0.230 4.230 15 H 0.081 0.919 16 C -0.003 4.003 17 N -0.916 5.916 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.144 3.856 23 C 0.081 3.919 24 H 0.095 0.905 25 C 0.260 3.740 26 N -0.470 5.470 27 C 0.021 3.979 28 C -0.108 4.108 29 N -0.367 5.367 30 C 0.062 3.938 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.202 0.798 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.030 0.970 40 H 0.027 0.973 41 H 0.254 0.746 42 H 0.104 0.896 43 H 0.034 0.966 44 H 0.177 0.823 45 H 0.179 0.821 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -3.918 10.572 11.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.105 4.105 3 C -0.095 4.095 4 C -0.105 4.105 5 C 0.374 3.626 6 O -0.394 6.394 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.161 4.161 10 C -0.125 4.125 11 H 0.110 0.890 12 C 0.016 3.984 13 N -0.325 5.325 14 C -0.358 4.358 15 H 0.098 0.902 16 C -0.200 4.200 17 N -0.563 5.563 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.019 3.981 23 C -0.023 4.023 24 H 0.112 0.888 25 C 0.012 3.988 26 N -0.189 5.189 27 C -0.130 4.130 28 C -0.238 4.238 29 N -0.039 5.039 30 C -0.060 4.060 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.217 0.783 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.122 0.878 43 H 0.052 0.948 44 H 0.194 0.806 45 H 0.197 0.803 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.244 -3.699 10.340 11.052 hybrid contribution -1.218 -0.947 -1.041 1.861 sum 0.026 -4.646 9.299 10.395 Atomic orbital electron populations 1.20709 0.88462 1.02794 1.04045 1.19395 0.97765 0.91207 1.02138 1.23766 0.93081 1.01763 0.90872 1.19893 0.92265 0.89450 1.08942 1.17143 0.86593 0.81798 0.77062 1.90829 1.13047 1.86569 1.48953 1.48256 1.07117 1.05820 1.72783 1.22172 0.96984 0.81446 1.00402 1.22820 0.93489 0.97531 1.02241 1.22833 0.96191 0.93706 0.99743 0.89010 1.21060 0.94491 0.92041 0.90812 1.44111 1.36646 1.15359 1.36367 1.19043 1.05026 1.08025 1.03745 0.90165 1.24797 0.98853 0.97432 0.98870 1.69866 1.36741 1.11796 1.37942 0.86121 0.80027 0.76924 0.82806 1.21633 1.21746 1.20567 1.22263 0.92399 0.96017 0.87445 1.23407 0.80436 0.96966 1.01511 0.88768 1.21516 0.86647 0.86306 1.04306 1.70793 1.14186 1.12648 1.21233 1.22578 0.96852 0.90662 1.02888 1.22536 0.89187 0.92917 1.19206 1.42770 1.05935 1.08624 1.46572 1.21386 0.81116 1.00293 1.03210 0.89485 0.91746 0.90522 0.78261 0.91745 0.90458 0.90128 0.89862 0.95240 0.95471 0.93578 0.87844 0.94775 0.80558 0.80341 0.82312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 9.97 36.01 0.36 -0.92 16 2 C -0.10 -1.52 5.82 -105.17 -0.61 -2.14 16 3 C -0.07 -1.27 6.59 -38.76 -0.26 -1.53 16 4 C -0.10 -1.98 6.04 -102.64 -0.62 -2.60 16 5 C 0.58 12.27 7.63 -12.61 -0.10 12.17 16 6 O -0.52 -12.33 16.43 5.25 0.09 -12.24 16 7 N -0.61 -11.00 2.85 -165.02 -0.47 -11.47 16 8 C 0.11 1.72 6.92 -2.55 -0.02 1.71 16 9 C -0.12 -1.73 6.23 -24.77 -0.15 -1.89 16 10 C -0.11 -1.58 3.90 -88.37 -0.34 -1.92 16 11 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 12 C 0.14 2.57 6.66 -3.86 -0.03 2.54 16 13 N -0.60 -13.64 3.37 -172.22 -0.58 -14.22 16 14 C -0.23 -5.82 10.24 -15.06 -0.15 -5.98 16 15 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 16 C 0.00 -0.07 5.48 -17.43 -0.10 -0.17 16 17 N -0.92 -24.53 10.26 55.49 0.57 -23.97 16 18 Si 0.91 20.72 29.56 -169.99 -5.02 15.70 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 C 0.14 3.15 3.87 -3.39 -0.01 3.13 16 23 C 0.08 1.40 2.92 -65.77 -0.19 1.20 16 24 H 0.10 1.48 6.06 -51.93 -0.31 1.16 16 25 C 0.26 5.17 7.67 -154.13 -1.18 3.99 16 26 N -0.47 -9.61 10.71 -11.32 -0.12 -9.73 16 27 C 0.02 0.33 11.83 -17.88 -0.21 0.11 16 28 C -0.11 -1.50 11.76 -16.41 -0.19 -1.69 16 29 N -0.37 -5.97 2.94 -61.10 -0.18 -6.15 16 30 C 0.06 0.87 10.48 -16.74 -0.18 0.69 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 33 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.20 3.53 1.78 -55.21 -0.10 3.43 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.25 7.98 -51.93 -0.41 0.84 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.38 7.88 -51.93 -0.41 0.97 16 39 H 0.03 0.54 7.74 -51.93 -0.40 0.14 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.10 2.39 3.77 -51.93 -0.20 2.19 16 43 H 0.03 0.89 7.88 -51.93 -0.41 0.48 16 44 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 45 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 46 H 0.16 1.56 8.04 -52.49 -0.42 1.14 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -33.73 361.69 -10.26 -44.00 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.01 Total: 5.90 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.98 Total: 6.73 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -0.78 Total: -65.54 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.73 -10.26 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076084831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.257 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds