Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39735 * 119.42652 * 2 1 4 4 C 1.38946 * 119.29305 * 179.97438 * 3 2 1 5 5 C 1.47225 * 120.85858 * 179.97438 * 4 3 2 6 6 O 1.21636 * 119.99648 * 184.94875 * 5 4 3 7 7 N 1.34774 * 120.00397 * 4.94852 * 5 4 3 8 8 C 1.47348 * 125.52755 * 172.96861 * 7 5 4 9 9 C 1.54942 * 104.88870 * 156.54173 * 8 7 5 10 10 C 1.54778 * 101.49195 * 37.21831 * 9 8 7 11 11 H 1.08996 * 113.12269 * 85.60556 * 10 9 8 12 12 C 1.53268 * 109.75714 * 212.26742 * 10 9 8 13 13 N 1.46578 * 108.14216 * 95.79136 * 12 10 9 14 14 C 1.36935 * 125.31072 * 177.89691 * 13 12 10 15 15 H 1.08005 * 119.99454 * 353.50382 * 14 13 12 16 16 C 1.38813 * 120.00348 * 173.50296 * 14 13 12 17 17 N 1.31616 * 119.99612 * 4.65701 * 16 14 13 18 18 Si 1.86794 * 119.99805 * 184.65764 * 16 14 13 19 19 H 1.48501 * 109.47144 * 94.99839 * 18 16 14 20 20 H 1.48503 * 109.47164 * 214.99430 * 18 16 14 21 21 H 1.48503 * 109.47619 * 334.99923 * 18 16 14 22 22 C 1.46614 * 109.38496 * 357.89578 * 13 12 10 23 23 C 1.47217 * 125.53017 * 352.96979 * 7 5 4 24 24 H 1.09002 * 112.28278 * 55.66600 * 23 7 5 25 25 C 1.46550 * 118.27516 * 0.25719 * 4 3 2 26 26 N 1.31983 * 132.71126 * 179.74641 * 25 4 3 27 27 C 1.33744 * 109.16531 * 179.97438 * 26 25 4 28 28 C 1.34958 * 108.60467 * 359.53939 * 27 26 25 29 29 N 1.37001 * 107.15399 * 0.51326 * 28 27 26 30 30 C 1.35106 * 119.42387 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47362 * 89.99676 * 1 2 3 32 32 H 1.09001 * 109.46997 * 209.99834 * 1 2 3 33 33 H 1.08997 * 109.46962 * 329.99405 * 1 2 3 34 34 H 1.08002 * 120.35455 * 0.02562 * 3 2 1 35 35 H 1.09003 * 110.35651 * 275.39636 * 8 7 5 36 36 H 1.08998 * 110.35862 * 37.58237 * 8 7 5 37 37 H 1.09002 * 111.01674 * 155.28847 * 9 8 7 38 38 H 1.09001 * 111.02116 * 279.17764 * 9 8 7 39 39 H 1.08997 * 109.73538 * 336.10935 * 12 10 9 40 40 H 1.09000 * 109.73192 * 215.46499 * 12 10 9 41 41 H 0.97006 * 119.99725 * 180.02562 * 17 16 14 42 42 H 1.09000 * 109.91210 * 137.17087 * 22 13 12 43 43 H 1.09002 * 109.91248 * 258.45185 * 22 13 12 44 44 H 1.07998 * 125.69330 * 180.02562 * 27 26 25 45 45 H 1.08004 * 126.42386 * 179.97438 * 28 27 26 46 46 H 1.07994 * 119.14447 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1936 1.2171 0.0000 4 6 3.5830 1.2138 0.0005 5 6 4.3411 2.4759 0.0000 6 8 5.5540 2.4567 -0.0904 7 7 3.6913 3.6524 0.0996 8 6 4.3283 4.9717 0.2579 9 6 3.2828 5.9848 -0.2725 10 6 1.9602 5.3491 0.2196 11 1 1.7026 5.6328 1.2400 12 6 0.8366 5.6535 -0.7774 13 7 0.7119 4.5111 -1.6872 14 6 -0.2130 4.3955 -2.6904 15 1 -0.9926 5.1358 -2.7940 16 6 -0.1486 3.3270 -3.5742 17 7 0.7440 2.3767 -3.3937 18 14 -1.3286 3.2380 -5.0195 19 1 -0.6799 3.8149 -6.2244 20 1 -1.6856 1.8204 -5.2805 21 1 -2.5583 4.0080 -4.7029 22 6 1.7317 3.5113 -1.3557 23 6 2.2300 3.8281 0.0681 24 1 1.7254 3.2299 0.8268 25 6 4.2743 -0.0784 -0.0047 26 7 5.5516 -0.4104 -0.0099 27 6 5.6588 -1.7435 -0.0126 28 6 4.4185 -2.2752 0.0012 29 7 3.5313 -1.2313 0.0010 30 6 2.1708 -1.1768 0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6500 2.1503 0.0004 35 1 4.5444 5.1648 1.3087 36 1 5.2431 5.0243 -0.3325 37 1 3.4326 6.9692 0.1708 38 1 3.3088 6.0398 -1.3608 39 1 1.0815 6.5512 -1.3450 40 1 -0.1009 5.8014 -0.2414 41 1 0.7892 1.6302 -4.0115 42 1 1.2954 2.5128 -1.3828 43 1 2.5594 3.5770 -2.0620 44 1 6.5836 -2.3013 -0.0165 45 1 4.1714 -3.3266 0.0025 46 1 1.6076 -2.0983 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076084831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = 116.800174 kcal Electronic energy + Delta-G solvation = -31143.664123 eV Core-core repulsion = 27229.535277 eV Total energy + Delta-G solvation = -3914.128847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.70332 -41.86170 -39.38314 -38.66754 -36.51599 -34.94862 -33.95127 -33.20325 -32.22906 -30.66472 -29.48357 -28.65586 -27.58147 -26.42325 -25.69014 -23.98734 -22.94463 -22.45644 -22.35899 -21.24820 -20.39843 -19.21097 -18.76161 -18.51257 -17.45389 -16.96341 -16.89078 -16.44286 -16.29527 -15.99473 -15.73111 -15.30140 -15.10199 -14.92419 -14.57011 -14.40539 -14.34872 -14.20680 -13.84473 -13.55242 -13.36955 -13.35446 -13.04783 -12.85325 -12.82637 -12.69959 -12.41245 -12.31695 -12.11053 -11.92762 -11.73055 -11.53521 -11.49406 -11.37886 -11.16089 -10.84980 -10.67737 -9.74376 -9.61732 -8.87505 -8.80502 -7.78489 -5.17678 -0.67739 0.30471 1.48041 1.48824 1.51413 1.58413 1.63156 1.95523 1.98474 2.51859 2.59666 3.13843 3.20373 3.35816 3.38687 3.54089 3.67748 3.75720 3.81281 3.93431 4.01245 4.15844 4.23499 4.29886 4.39819 4.45072 4.47606 4.56089 4.59902 4.73899 4.75391 4.80802 4.84443 4.88313 4.94050 5.12657 5.15729 5.18355 5.22562 5.28000 5.42590 5.49381 5.52723 5.56261 5.65823 5.73865 6.06679 6.24340 6.40330 6.96277 7.07525 7.13223 7.81425 8.42504 9.25976 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.005307 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.874214 B = 5274.359236 C = 7047.186842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.124 4.124 3 C -0.062 4.062 4 C -0.142 4.142 5 C 0.575 3.425 6 O -0.564 6.564 7 N -0.605 5.605 8 C 0.105 3.895 9 C -0.112 4.112 10 C -0.091 4.091 11 H 0.140 0.860 12 C 0.136 3.864 13 N -0.618 5.618 14 C -0.236 4.236 15 H 0.086 0.914 16 C -0.054 4.054 17 N -0.938 5.938 18 Si 0.967 3.033 19 H -0.301 1.301 20 H -0.295 1.295 21 H -0.264 1.264 22 C 0.159 3.841 23 C 0.088 3.912 24 H 0.117 0.883 25 C 0.222 3.778 26 N -0.523 5.523 27 C -0.003 4.003 28 C -0.083 4.083 29 N -0.372 5.372 30 C 0.081 3.919 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.194 0.806 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.125 0.875 38 H 0.049 0.951 39 H 0.030 0.970 40 H 0.047 0.953 41 H 0.243 0.757 42 H 0.090 0.910 43 H -0.025 1.025 44 H 0.207 0.793 45 H 0.233 0.767 46 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -4.806 12.569 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.084 4.084 4 C -0.148 4.148 5 C 0.365 3.635 6 O -0.445 6.445 7 N -0.338 5.338 8 C -0.016 4.016 9 C -0.150 4.150 10 C -0.110 4.110 11 H 0.158 0.842 12 C 0.011 3.989 13 N -0.344 5.344 14 C -0.365 4.365 15 H 0.104 0.896 16 C -0.248 4.248 17 N -0.587 5.587 18 Si 0.797 3.203 19 H -0.229 1.229 20 H -0.221 1.221 21 H -0.189 1.189 22 C 0.034 3.966 23 C -0.015 4.015 24 H 0.134 0.866 25 C -0.025 4.025 26 N -0.243 5.243 27 C -0.151 4.151 28 C -0.212 4.212 29 N -0.045 5.045 30 C -0.040 4.040 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.210 0.790 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.143 0.857 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.107 0.893 43 H -0.007 1.007 44 H 0.224 0.776 45 H 0.250 0.750 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -0.964 -4.537 12.363 13.204 hybrid contribution -0.529 -0.712 -1.696 1.913 sum -1.492 -5.248 10.667 11.982 Atomic orbital electron populations 1.20695 0.86447 1.04872 1.03160 1.19715 0.99159 0.90741 1.03104 1.23777 0.92237 1.02891 0.89538 1.19932 0.93180 0.89351 1.12375 1.17558 0.86375 0.83053 0.76470 1.90769 1.14798 1.87356 1.51538 1.48357 1.07674 1.06160 1.71571 1.22434 0.96643 0.80513 1.02045 1.22793 0.92531 0.99267 1.00422 1.22953 0.95210 0.91450 1.01371 0.84225 1.21289 0.96515 0.90370 0.90756 1.44375 1.36048 1.17257 1.36719 1.19385 1.05306 1.07570 1.04208 0.89586 1.25469 1.00519 0.97629 1.01133 1.70095 1.38290 1.12062 1.38245 0.85227 0.78890 0.76539 0.79665 1.22934 1.22140 1.18874 1.21907 0.90192 0.95593 0.88959 1.23328 0.79857 0.99334 0.99018 0.86569 1.21571 0.87232 0.87422 1.06259 1.70693 1.15364 1.15497 1.22705 1.23252 0.99265 0.89373 1.03246 1.23400 0.87967 0.94345 1.15469 1.43077 1.06896 1.08199 1.46287 1.22173 0.80335 1.01898 0.99614 0.91663 0.87673 0.90565 0.78969 0.88595 0.92268 0.85667 0.93209 0.95241 0.93547 0.94748 0.89257 1.00697 0.77602 0.75045 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.16 9.97 71.24 0.71 -1.45 16 2 C -0.12 -3.59 5.82 -20.22 -0.12 -3.70 16 3 C -0.06 -2.23 6.59 22.80 0.15 -2.08 16 4 C -0.14 -5.96 6.04 -18.58 -0.11 -6.08 16 5 C 0.57 25.79 7.63 86.61 0.66 26.45 16 6 O -0.56 -29.05 16.43 -4.15 -0.07 -29.12 16 7 N -0.60 -22.78 2.85 -794.25 -2.26 -25.04 16 8 C 0.10 3.22 6.92 86.88 0.60 3.82 16 9 C -0.11 -3.01 6.23 31.86 0.20 -2.81 16 10 C -0.09 -2.51 3.90 -9.34 -0.04 -2.54 16 11 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 12 C 0.14 4.69 6.66 86.45 0.58 5.26 16 13 N -0.62 -28.43 3.37 -698.78 -2.36 -30.79 16 14 C -0.24 -12.02 10.24 84.03 0.86 -11.16 16 15 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.05 -2.83 5.48 84.86 0.47 -2.36 16 17 N -0.94 -52.33 10.26 21.65 0.22 -52.11 16 18 Si 0.97 43.21 29.56 68.60 2.03 45.23 16 19 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 22 C 0.16 7.24 3.87 86.74 0.34 7.58 16 23 C 0.09 3.04 2.92 46.00 0.13 3.18 16 24 H 0.12 3.54 6.06 -2.39 -0.01 3.52 16 25 C 0.22 9.15 7.67 135.76 1.04 10.19 16 26 N -0.52 -22.21 10.71 -189.72 -2.03 -24.24 16 27 C 0.00 -0.08 11.83 83.65 0.99 0.91 16 28 C -0.08 -2.05 11.76 83.13 0.98 -1.07 16 29 N -0.37 -11.58 2.94 -347.21 -1.02 -12.60 16 30 C 0.08 2.05 10.48 83.30 0.87 2.93 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.51 8.05 -2.39 -0.02 1.49 16 33 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 34 H 0.19 6.99 1.78 -5.47 -0.01 6.98 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 2.02 7.98 -2.39 -0.02 2.00 16 37 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 1.68 7.88 -2.39 -0.02 1.66 16 39 H 0.03 1.03 7.74 -2.39 -0.02 1.01 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.24 13.57 8.31 -92.70 -0.77 12.80 16 42 H 0.09 4.31 3.77 -2.39 -0.01 4.30 16 43 H -0.02 -1.41 7.88 -2.39 -0.02 -1.43 16 44 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 45 H 0.23 3.02 8.06 -2.91 -0.02 2.99 16 46 H 0.21 3.00 8.04 -2.91 -0.02 2.97 16 Total: -1.00 -82.33 361.69 3.83 -78.51 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 1.01 Total: 23.11 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 8.31 Total: 27.05 kcal Atomic # 7 Polarization: -137.33 SS G_CDS: -7.45 Total: -144.78 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.07 Total: -29.12 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -82.33 3.83 -78.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076084831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.307 kcal (2) G-P(sol) polarization free energy of solvation -82.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds