Wall clock time and date at job start Sat Apr 11 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34848 * 119.68106 * 2 1 4 4 C 1.40573 * 120.34354 * 180.02562 * 3 2 1 5 5 C 1.35890 * 119.73231 * 359.97438 * 4 3 2 6 6 C 1.41188 * 119.34940 * 359.97001 * 5 4 3 7 7 N 1.32228 * 132.05354 * 180.33560 * 6 5 4 8 8 C 1.34576 * 109.02665 * 180.10973 * 7 6 5 9 9 C 1.47592 * 125.91659 * 179.89024 * 8 7 6 10 10 O 1.21597 * 119.99910 * 179.69837 * 9 8 7 11 11 N 1.34779 * 120.00540 * 359.68693 * 9 8 7 12 12 C 1.47346 * 125.51659 * 0.03029 * 11 9 8 13 13 C 1.54860 * 104.90363 * 156.70641 * 12 11 9 14 14 C 1.54784 * 101.41862 * 37.27358 * 13 12 11 15 15 H 1.09006 * 113.40287 * 85.76078 * 14 13 12 16 16 C 1.53515 * 109.68354 * 212.86984 * 14 13 12 17 17 N 1.46654 * 107.04931 * 84.08984 * 16 14 13 18 18 C 1.36932 * 125.29109 * 197.35876 * 17 16 14 19 19 H 1.08001 * 120.00139 * 0.05381 * 18 17 16 20 20 C 1.38809 * 119.99912 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99824 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47110 * 90.00233 * 22 20 18 24 24 H 1.48500 * 109.47152 * 209.99662 * 22 20 18 25 25 H 1.48499 * 109.47483 * 329.99752 * 22 20 18 26 26 C 1.46495 * 109.42081 * 17.38481 * 17 16 14 27 27 C 1.47250 * 125.52526 * 180.02562 * 11 9 8 28 28 H 1.08996 * 112.73273 * 56.17468 * 27 11 9 29 29 C 1.36575 * 108.16541 * 359.62576 * 8 7 6 30 30 N 1.36196 * 107.09145 * 0.22460 * 29 8 7 31 31 H 1.09003 * 109.46945 * 270.01590 * 1 2 3 32 32 H 1.08994 * 109.47403 * 30.02029 * 1 2 3 33 33 H 1.09007 * 109.46991 * 150.02623 * 1 2 3 34 34 H 1.07999 * 119.82727 * 0.02562 * 3 2 1 35 35 H 1.08006 * 120.13209 * 180.02562 * 4 3 2 36 36 H 1.08006 * 120.32984 * 180.02562 * 5 4 3 37 37 H 1.09000 * 110.35579 * 275.57238 * 12 11 9 38 38 H 1.09001 * 110.35394 * 37.75501 * 12 11 9 39 39 H 1.09000 * 111.08611 * 279.22111 * 13 12 11 40 40 H 1.08996 * 110.99755 * 155.29035 * 13 12 11 41 41 H 1.08997 * 109.92419 * 324.74273 * 16 14 13 42 42 H 1.09000 * 109.92120 * 203.44008 * 16 14 13 43 43 H 0.96999 * 120.00413 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.71712 * 117.76499 * 26 17 16 45 45 H 1.09001 * 109.71175 * 238.36286 * 26 17 16 46 46 H 1.07991 * 126.45635 * 180.25601 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1746 1.1716 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2678 0.0157 -0.0005 6 6 3.5564 -1.2039 0.0007 7 7 3.9582 -2.4636 0.0067 8 6 2.8795 -3.2682 0.0025 9 6 2.9001 -4.7440 0.0045 10 8 1.8556 -5.3666 0.0058 11 7 4.0766 -5.4016 0.0048 12 6 5.4089 -4.7724 0.0038 13 6 6.3562 -5.8447 0.5963 14 6 5.7654 -7.1422 -0.0064 15 1 6.1492 -7.3717 -1.0005 16 6 5.9468 -8.3014 0.9836 17 7 4.8261 -8.2402 1.9275 18 6 4.7823 -8.8650 3.1452 19 1 5.6199 -9.4606 3.4769 20 6 3.6616 -8.7323 3.9534 21 7 2.6409 -8.0064 3.5492 22 14 3.6022 -9.5841 5.6148 23 1 4.1531 -8.6788 6.6552 24 1 2.1951 -9.9222 5.9477 25 1 4.4112 -10.8283 5.5626 26 6 3.7604 -7.4072 1.3649 27 6 4.2387 -6.8652 0.0062 28 1 3.7286 -7.3463 -0.8283 29 6 1.7623 -2.4826 0.0019 30 7 2.1838 -1.1875 0.0008 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8897 -0.5141 33 1 -0.3633 -0.8903 -0.5135 34 1 1.6266 2.1022 0.0004 35 1 4.1116 2.1281 -0.0001 36 1 5.3479 0.0169 -0.0005 37 1 5.7091 -4.5217 -1.0136 38 1 5.4069 -3.8793 0.6287 39 1 6.3009 -5.8584 1.6848 40 1 7.3813 -5.6887 0.2604 41 1 6.8896 -8.1887 1.5188 42 1 5.9312 -9.2516 0.4497 43 1 1.8579 -7.9134 4.1141 44 1 2.8604 -8.0060 1.2255 45 1 3.5488 -6.5766 2.0383 46 1 0.7378 -2.8240 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076548944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:47 Heat of formation + Delta-G solvation = 101.643241 kcal Electronic energy + Delta-G solvation = -29778.156749 eV Core-core repulsion = 25863.370648 eV Total energy + Delta-G solvation = -3914.786101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.01067 -39.86872 -38.08902 -37.16734 -34.79473 -34.39108 -32.23431 -31.44122 -30.47926 -29.56833 -28.51102 -27.56327 -26.71532 -24.67985 -24.00234 -22.88684 -22.32946 -21.39107 -20.34354 -19.47573 -18.71443 -17.99389 -16.92970 -16.73411 -16.51790 -16.30880 -15.53628 -15.26755 -14.79367 -14.50254 -14.43222 -14.07140 -14.04779 -13.62715 -13.41900 -13.29395 -13.12493 -12.64868 -12.57802 -12.50563 -12.03072 -11.87062 -11.64835 -11.55650 -11.37570 -11.18411 -11.00610 -10.89075 -10.70862 -10.57125 -10.18746 -9.96632 -9.85113 -9.74502 -9.62066 -9.53372 -8.96815 -8.48618 -8.08153 -7.92737 -6.70323 -5.57529 -2.93915 0.41999 1.05594 2.15097 2.27829 3.20273 3.41189 3.46864 3.51037 3.53887 3.84035 3.91479 4.09359 4.43595 4.46365 4.58750 4.72626 4.86638 5.00211 5.05606 5.12134 5.19945 5.22422 5.30288 5.42631 5.45590 5.57814 5.61665 5.74201 5.77623 5.84751 5.88504 5.94890 6.07640 6.12845 6.23539 6.25739 6.34151 6.39591 6.57414 6.72209 6.75227 6.76432 6.90124 7.00694 7.57233 7.70040 7.76170 8.01902 8.10450 8.40523 8.67125 9.33620 9.94778 10.58335 11.51741 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.003110 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.316179 B = 9000.140906 C = 9840.473936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.091 3.909 3 C -0.148 4.148 4 C -0.101 4.101 5 C -0.080 4.080 6 C 0.223 3.777 7 N -0.459 5.459 8 C 0.026 3.974 9 C 0.607 3.393 10 O -0.528 6.528 11 N -0.588 5.588 12 C 0.108 3.892 13 C -0.123 4.123 14 C -0.111 4.111 15 H 0.087 0.913 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.914 5.914 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.180 3.820 27 C 0.114 3.886 28 H 0.081 0.919 29 C -0.022 4.022 30 N -0.363 5.363 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.152 0.848 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.252 0.748 44 H 0.045 0.955 45 H 0.056 0.944 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 21.594 -10.966 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.012 4.012 3 C -0.168 4.168 4 C -0.125 4.125 5 C -0.100 4.100 6 C -0.022 4.022 7 N -0.181 5.181 8 C -0.107 4.107 9 C 0.393 3.607 10 O -0.404 6.404 11 N -0.320 5.320 12 C -0.014 4.014 13 C -0.161 4.161 14 C -0.131 4.131 15 H 0.106 0.894 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.360 4.360 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.561 5.561 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.055 3.945 27 C 0.010 3.990 28 H 0.099 0.901 29 C -0.157 4.157 30 N -0.035 5.035 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 1.149 20.914 -10.783 23.558 hybrid contribution -0.896 -0.094 0.928 1.294 sum 0.253 20.820 -9.854 23.035 Atomic orbital electron populations 1.20967 0.87830 1.04677 1.04198 1.20345 0.95279 0.83707 1.01871 1.20602 0.94793 0.96426 1.05029 1.21005 0.93658 0.98356 0.99445 1.20303 1.00743 0.87566 1.01365 1.21094 0.79979 0.94722 1.06402 1.70980 1.28439 0.97727 1.20925 1.20708 0.88926 0.94543 1.06561 1.16441 0.83091 0.83657 0.77481 1.90838 1.31347 1.67375 1.50811 1.48265 1.05383 1.07318 1.71022 1.22421 0.81361 0.96946 1.00714 1.22772 0.97767 0.93637 1.01914 1.22954 0.94452 0.96572 0.99132 0.89443 1.21072 0.92496 0.94016 0.90551 1.44140 1.13954 1.57795 1.17033 1.19000 1.01174 1.24042 0.91798 0.90412 1.24844 0.96533 1.00238 0.98762 1.70014 1.06381 1.42901 1.36758 0.86151 0.76785 0.78954 0.84041 1.21724 1.21732 1.20713 1.21274 0.90604 0.94831 0.87837 1.22881 0.95793 0.79074 1.01217 0.90088 1.22533 1.01339 0.80057 1.11757 1.42736 1.08914 1.05556 1.46321 0.89492 0.89138 0.90381 0.83306 0.83981 0.83023 0.92245 0.88832 0.89765 0.90720 0.94374 0.96624 0.93767 0.93718 0.92635 0.78888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.84 36.00 0.35 -0.36 16 2 C 0.09 0.82 6.78 -81.64 -0.55 0.26 16 3 C -0.15 -1.02 9.58 -39.90 -0.38 -1.40 16 4 C -0.10 -0.71 10.06 -39.54 -0.40 -1.11 16 5 C -0.08 -0.77 10.11 -39.30 -0.40 -1.17 16 6 C 0.22 3.03 7.80 -156.04 -1.22 1.81 16 7 N -0.46 -7.46 8.37 -9.35 -0.08 -7.54 16 8 C 0.03 0.45 6.78 -83.45 -0.57 -0.11 16 9 C 0.61 12.72 7.56 -12.44 -0.09 12.63 16 10 O -0.53 -12.60 16.96 5.28 0.09 -12.52 16 11 N -0.59 -11.79 2.83 -163.09 -0.46 -12.25 16 12 C 0.11 1.81 6.08 -2.60 -0.02 1.79 16 13 C -0.12 -2.03 6.32 -24.81 -0.16 -2.19 16 14 C -0.11 -2.00 3.97 -88.26 -0.35 -2.35 16 15 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.15 3.08 6.50 -3.69 -0.02 3.05 16 17 N -0.60 -16.09 3.37 -172.25 -0.58 -16.67 16 18 C -0.23 -6.70 10.25 -15.06 -0.15 -6.86 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 21 N -0.91 -28.61 10.23 55.49 0.57 -28.04 16 22 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.18 4.80 4.62 -3.58 -0.02 4.78 16 27 C 0.11 2.41 3.81 -65.90 -0.25 2.16 16 28 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 29 C -0.02 -0.33 10.78 -16.21 -0.17 -0.50 16 30 N -0.36 -4.59 2.93 -58.18 -0.17 -4.76 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.08 0.50 7.46 -51.93 -0.39 0.11 16 34 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.14 0.55 8.06 -52.48 -0.42 0.12 16 36 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.60 6.17 -51.93 -0.32 1.28 16 39 H 0.08 1.64 7.93 -51.93 -0.41 1.23 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.78 7.95 -51.93 -0.41 0.36 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.04 1.36 7.51 -51.93 -0.39 0.97 16 45 H 0.06 1.68 6.89 -51.93 -0.36 1.33 16 46 H 0.19 2.49 7.77 -52.49 -0.41 2.08 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -36.91 370.82 -11.02 -47.93 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.46 Total: 0.14 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -4.49 Total: 10.15 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -0.72 Total: -69.26 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.91 -11.02 -47.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076548944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.576 kcal (2) G-P(sol) polarization free energy of solvation -36.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds