Wall clock time and date at job start Sat Apr 11 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34848 * 119.68106 * 2 1 4 4 C 1.40573 * 120.34354 * 180.02562 * 3 2 1 5 5 C 1.35890 * 119.73231 * 359.97438 * 4 3 2 6 6 C 1.41188 * 119.34940 * 359.97001 * 5 4 3 7 7 N 1.32228 * 132.05354 * 180.33560 * 6 5 4 8 8 C 1.34576 * 109.02665 * 180.10973 * 7 6 5 9 9 C 1.47592 * 125.91659 * 179.89024 * 8 7 6 10 10 O 1.21597 * 119.99910 * 179.69837 * 9 8 7 11 11 N 1.34779 * 120.00540 * 359.68693 * 9 8 7 12 12 C 1.47346 * 125.51659 * 0.03029 * 11 9 8 13 13 C 1.54860 * 104.90363 * 156.70641 * 12 11 9 14 14 C 1.54784 * 101.41862 * 37.27358 * 13 12 11 15 15 H 1.09006 * 113.40287 * 85.76078 * 14 13 12 16 16 C 1.53515 * 109.68354 * 212.86984 * 14 13 12 17 17 N 1.46654 * 107.04931 * 84.08984 * 16 14 13 18 18 C 1.36932 * 125.29109 * 197.35876 * 17 16 14 19 19 H 1.08001 * 120.00139 * 0.05381 * 18 17 16 20 20 C 1.38809 * 119.99912 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00420 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99824 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47110 * 90.00233 * 22 20 18 24 24 H 1.48500 * 109.47152 * 209.99662 * 22 20 18 25 25 H 1.48499 * 109.47483 * 329.99752 * 22 20 18 26 26 C 1.46495 * 109.42081 * 17.38481 * 17 16 14 27 27 C 1.47250 * 125.52526 * 180.02562 * 11 9 8 28 28 H 1.08996 * 112.73273 * 56.17468 * 27 11 9 29 29 C 1.36575 * 108.16541 * 359.62576 * 8 7 6 30 30 N 1.36196 * 107.09145 * 0.22460 * 29 8 7 31 31 H 1.09003 * 109.46945 * 270.01590 * 1 2 3 32 32 H 1.08994 * 109.47403 * 30.02029 * 1 2 3 33 33 H 1.09007 * 109.46991 * 150.02623 * 1 2 3 34 34 H 1.07999 * 119.82727 * 0.02562 * 3 2 1 35 35 H 1.08006 * 120.13209 * 180.02562 * 4 3 2 36 36 H 1.08006 * 120.32984 * 180.02562 * 5 4 3 37 37 H 1.09000 * 110.35579 * 275.57238 * 12 11 9 38 38 H 1.09001 * 110.35394 * 37.75501 * 12 11 9 39 39 H 1.09000 * 111.08611 * 279.22111 * 13 12 11 40 40 H 1.08996 * 110.99755 * 155.29035 * 13 12 11 41 41 H 1.08997 * 109.92419 * 324.74273 * 16 14 13 42 42 H 1.09000 * 109.92120 * 203.44008 * 16 14 13 43 43 H 0.96999 * 120.00413 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.71712 * 117.76499 * 26 17 16 45 45 H 1.09001 * 109.71175 * 238.36286 * 26 17 16 46 46 H 1.07991 * 126.45635 * 180.25601 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1746 1.1716 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2678 0.0157 -0.0005 6 6 3.5564 -1.2039 0.0007 7 7 3.9582 -2.4636 0.0067 8 6 2.8795 -3.2682 0.0025 9 6 2.9001 -4.7440 0.0045 10 8 1.8556 -5.3666 0.0058 11 7 4.0766 -5.4016 0.0048 12 6 5.4089 -4.7724 0.0038 13 6 6.3562 -5.8447 0.5963 14 6 5.7654 -7.1422 -0.0064 15 1 6.1492 -7.3717 -1.0005 16 6 5.9468 -8.3014 0.9836 17 7 4.8261 -8.2402 1.9275 18 6 4.7823 -8.8650 3.1452 19 1 5.6199 -9.4606 3.4769 20 6 3.6616 -8.7323 3.9534 21 7 2.6409 -8.0064 3.5492 22 14 3.6022 -9.5841 5.6148 23 1 4.1531 -8.6788 6.6552 24 1 2.1951 -9.9222 5.9477 25 1 4.4112 -10.8283 5.5626 26 6 3.7604 -7.4072 1.3649 27 6 4.2387 -6.8652 0.0062 28 1 3.7286 -7.3463 -0.8283 29 6 1.7623 -2.4826 0.0019 30 7 2.1838 -1.1875 0.0008 31 1 -0.3633 0.0003 1.0277 32 1 -0.3634 0.8897 -0.5141 33 1 -0.3633 -0.8903 -0.5135 34 1 1.6266 2.1022 0.0004 35 1 4.1116 2.1281 -0.0001 36 1 5.3479 0.0169 -0.0005 37 1 5.7091 -4.5217 -1.0136 38 1 5.4069 -3.8793 0.6287 39 1 6.3009 -5.8584 1.6848 40 1 7.3813 -5.6887 0.2604 41 1 6.8896 -8.1887 1.5188 42 1 5.9312 -9.2516 0.4497 43 1 1.8579 -7.9134 4.1141 44 1 2.8604 -8.0060 1.2255 45 1 3.5488 -6.5766 2.0383 46 1 0.7378 -2.8240 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076548944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:46 Heat of formation + Delta-G solvation = 78.184497 kcal Electronic energy + Delta-G solvation = -29779.173997 eV Core-core repulsion = 25863.370648 eV Total energy + Delta-G solvation = -3915.803348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.97403 -41.46586 -39.46914 -38.31906 -36.62772 -35.19082 -34.10860 -32.50290 -32.13903 -30.67605 -30.23303 -28.43601 -28.19635 -26.59470 -25.45096 -23.78250 -23.56479 -22.47506 -22.17185 -20.97091 -20.20355 -19.11455 -18.84017 -17.90909 -17.67608 -17.32645 -17.01437 -16.67500 -16.33276 -15.93553 -15.69205 -15.34726 -15.23271 -15.02704 -14.79443 -14.39498 -14.35565 -14.08412 -13.72324 -13.59063 -13.36125 -13.23579 -13.22625 -12.94533 -12.72029 -12.62980 -12.48002 -12.37403 -12.16421 -12.05552 -11.93184 -11.85592 -11.56644 -11.48116 -11.32525 -11.04849 -10.71470 -9.99732 -9.60356 -8.90785 -8.86800 -7.83669 -5.23465 -0.36354 0.18955 0.97531 1.35649 1.41033 1.44983 1.53911 1.97110 2.27788 2.47904 2.55423 2.95751 3.25931 3.32562 3.49910 3.63587 3.67619 3.75281 3.81986 4.00526 4.04572 4.18907 4.20748 4.33758 4.37595 4.48933 4.53641 4.59824 4.61523 4.63058 4.71343 4.80953 4.88906 4.94663 5.01108 5.09615 5.12940 5.19616 5.20618 5.24552 5.37443 5.44227 5.50049 5.56632 5.59796 5.78228 5.97092 6.18089 6.46841 6.59172 7.05045 7.10896 7.77646 8.39649 9.24501 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.003110 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.316179 B = 9000.140906 C = 9840.473936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.071 4.071 5 C -0.109 4.109 6 C 0.217 3.783 7 N -0.488 5.488 8 C -0.010 4.010 9 C 0.597 3.403 10 O -0.578 6.578 11 N -0.592 5.592 12 C 0.113 3.887 13 C -0.113 4.113 14 C -0.092 4.092 15 H 0.136 0.864 16 C 0.138 3.862 17 N -0.623 5.623 18 C -0.241 4.241 19 H 0.092 0.908 20 C -0.074 4.074 21 N -0.953 5.953 22 Si 0.983 3.017 23 H -0.285 1.285 24 H -0.298 1.298 25 H -0.261 1.261 26 C 0.204 3.796 27 C 0.115 3.885 28 H 0.080 0.920 29 C -0.027 4.027 30 N -0.363 5.363 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.194 0.806 35 H 0.187 0.813 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.047 0.953 40 H 0.124 0.876 41 H 0.054 0.946 42 H 0.028 0.972 43 H 0.242 0.758 44 H -0.013 1.013 45 H 0.006 0.994 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 25.008 -11.958 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.038 4.038 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.129 4.129 6 C -0.029 4.029 7 N -0.210 5.210 8 C -0.142 4.142 9 C 0.386 3.614 10 O -0.458 6.458 11 N -0.323 5.323 12 C -0.008 4.008 13 C -0.151 4.151 14 C -0.111 4.111 15 H 0.154 0.846 16 C 0.013 3.987 17 N -0.350 5.350 18 C -0.370 4.370 19 H 0.110 0.890 20 C -0.267 4.267 21 N -0.602 5.602 22 Si 0.811 3.189 23 H -0.212 1.212 24 H -0.225 1.225 25 H -0.185 1.185 26 C 0.078 3.922 27 C 0.010 3.990 28 H 0.098 0.902 29 C -0.163 4.163 30 N -0.035 5.035 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.084 0.916 34 H 0.211 0.789 35 H 0.204 0.796 36 H 0.186 0.814 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.142 0.858 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.051 0.949 44 H 0.005 0.995 45 H 0.024 0.976 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.645 24.341 -11.798 27.294 hybrid contribution -1.661 -0.912 1.223 2.255 sum 1.984 23.429 -10.575 25.781 Atomic orbital electron populations 1.21073 0.85988 1.05735 1.04735 1.21136 0.96911 0.83036 1.02749 1.21283 0.95134 0.97069 1.01658 1.21620 0.93891 0.99001 0.94932 1.20678 1.01799 0.86823 1.03564 1.21748 0.80764 0.95079 1.05292 1.70818 1.28223 0.98848 1.23086 1.20267 0.90840 0.92949 1.10119 1.17052 0.82689 0.85314 0.76387 1.90778 1.32966 1.68866 1.53144 1.48392 1.06630 1.06823 1.70478 1.22567 0.79503 0.96553 1.02211 1.22757 1.00228 0.92470 0.99629 1.23033 0.91446 0.95839 1.00754 0.84578 1.21353 0.91099 0.95866 0.90423 1.44451 1.15600 1.57435 1.17478 1.19519 1.01283 1.23513 0.92675 0.89037 1.25827 0.96337 1.01514 1.02997 1.70332 1.06899 1.45011 1.37976 0.85008 0.76408 0.78445 0.79057 1.21191 1.22534 1.18537 1.20749 0.89304 0.92255 0.89913 1.22697 0.98557 0.80110 0.97600 0.90169 1.22504 1.00910 0.81159 1.11706 1.42855 1.08971 1.05745 1.45935 0.89155 0.85854 0.91561 0.78862 0.79566 0.81391 0.89429 0.89467 0.93404 0.85805 0.92756 0.95438 0.94926 0.99476 0.97605 0.78425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.84 71.23 0.70 -0.49 16 2 C 0.06 1.00 6.78 41.02 0.28 1.28 16 3 C -0.13 -1.18 9.58 22.06 0.21 -0.97 16 4 C -0.07 -0.65 10.06 22.29 0.22 -0.43 16 5 C -0.11 -1.82 10.11 22.45 0.23 -1.60 16 6 C 0.22 5.83 7.80 134.20 1.05 6.88 16 7 N -0.49 -16.43 8.37 -183.49 -1.54 -17.97 16 8 C -0.01 -0.38 6.78 40.80 0.28 -0.10 16 9 C 0.60 27.34 7.56 86.71 0.66 28.00 16 10 O -0.58 -30.70 16.96 -4.02 -0.07 -30.77 16 11 N -0.59 -25.08 2.83 -788.16 -2.23 -27.31 16 12 C 0.11 3.75 6.08 86.85 0.53 4.27 16 13 C -0.11 -3.54 6.32 31.84 0.20 -3.34 16 14 C -0.09 -3.14 3.97 -9.27 -0.04 -3.18 16 15 H 0.14 3.48 8.14 -2.38 -0.02 3.46 16 16 C 0.14 5.71 6.50 86.52 0.56 6.27 16 17 N -0.62 -34.56 3.37 -698.88 -2.36 -36.92 16 18 C -0.24 -14.35 10.25 84.03 0.86 -13.49 16 19 H 0.09 5.06 7.83 -2.91 -0.02 5.04 16 20 C -0.07 -4.58 5.48 84.86 0.47 -4.12 16 21 N -0.95 -64.16 10.23 21.65 0.22 -63.93 16 22 Si 0.98 49.00 29.55 68.60 2.03 51.03 16 23 H -0.28 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 26 C 0.20 11.76 4.62 86.68 0.40 12.16 16 27 C 0.11 5.09 3.81 45.90 0.17 5.26 16 28 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 29 C -0.03 -0.85 10.78 83.63 0.90 0.05 16 30 N -0.36 -9.19 2.93 -337.97 -0.99 -10.18 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.12 0.40 8.07 -2.39 -0.02 0.38 16 33 H 0.07 0.84 7.46 -2.38 -0.02 0.82 16 34 H 0.19 0.07 8.06 -2.91 -0.02 0.04 16 35 H 0.19 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.09 3.05 6.17 -2.39 -0.01 3.04 16 39 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 40 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.05 2.10 7.95 -2.39 -0.02 2.08 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.24 15.95 8.31 -92.71 -0.77 15.18 16 44 H -0.01 -0.88 7.51 -2.39 -0.02 -0.89 16 45 H 0.01 0.38 6.89 -2.39 -0.02 0.37 16 46 H 0.20 5.75 7.77 -2.92 -0.02 5.73 16 Total: -1.00 -92.28 370.82 3.74 -88.54 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.99 Total: 11.03 kcal Atomic # 6 Polarization: 28.79 SS G_CDS: 7.68 Total: 36.47 kcal Atomic # 7 Polarization: -149.41 SS G_CDS: -6.89 Total: -156.31 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.07 Total: -30.77 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -92.28 3.74 -88.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076548944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.722 kcal (2) G-P(sol) polarization free energy of solvation -92.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds