Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48508 * 109.46965 * 239.99609 * 3 2 1 5 5 H 1.48497 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46990 * 120.00064 * 3 2 1 7 7 C 1.38811 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00050 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00217 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.94448 * 336.40825 * 10 9 7 12 12 C 1.53940 * 113.66388 * 107.81275 * 10 9 7 13 13 C 1.53947 * 87.29448 * 89.74299 * 12 10 9 14 14 H 1.09003 * 113.66509 * 270.26185 * 13 12 10 15 15 N 1.46499 * 113.66623 * 139.20809 * 13 12 10 16 16 C 1.34775 * 120.00425 * 107.80773 * 15 13 12 17 17 O 1.21546 * 119.99792 * 0.02562 * 16 15 13 18 18 C 1.47952 * 120.00323 * 180.02562 * 16 15 13 19 19 C 1.39793 * 119.32132 * 179.73482 * 18 16 15 20 20 C 1.37003 * 119.45501 * 179.72409 * 19 18 16 21 21 C 1.39774 * 118.23819 * 0.53493 * 20 19 18 22 22 C 1.46148 * 134.24622 * 179.77403 * 21 20 19 23 23 C 1.34423 * 106.92329 * 179.97438 * 22 21 20 24 24 N 1.36720 * 110.00492 * 359.97438 * 23 22 21 25 25 H 0.97006 * 124.99920 * 179.97438 * 24 23 22 26 26 C 1.37550 * 110.00355 * 0.02562 * 24 23 22 27 27 N 1.32177 * 133.21119 * 180.02562 * 26 24 23 28 28 C 1.52905 * 113.66373 * 205.00732 * 10 9 7 29 29 C 1.52904 * 121.14213 * 36.14034 * 28 10 9 30 30 C 1.53957 * 86.78105 * 100.82198 * 29 28 10 31 31 C 1.52914 * 121.13770 * 144.71102 * 28 10 9 32 32 H 0.97002 * 120.00418 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00300 * 0.02562 * 9 7 2 34 34 H 1.09003 * 113.58133 * 204.34615 * 12 10 9 35 35 H 1.09003 * 113.57966 * 335.14213 * 12 10 9 36 36 H 0.97005 * 120.00003 * 287.81483 * 15 13 12 37 37 H 1.08005 * 120.26825 * 0.02562 * 19 18 16 38 38 H 1.08000 * 120.88508 * 180.28488 * 20 19 18 39 39 H 1.08005 * 126.53517 * 0.02562 * 22 21 20 40 40 H 1.08005 * 124.99862 * 179.97438 * 23 22 21 41 41 H 1.09003 * 113.66244 * 346.35405 * 29 28 10 42 42 H 1.08997 * 113.66842 * 215.29629 * 29 28 10 43 43 H 1.08998 * 113.57948 * 139.33665 * 30 29 28 44 44 H 1.09000 * 113.57875 * 270.13309 * 30 29 28 45 45 H 1.08993 * 113.66382 * 144.70253 * 31 28 10 46 46 H 1.08992 * 113.66018 * 13.64281 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 1 3.0669 -3.5650 -0.4010 12 6 1.9946 -4.4069 1.3444 13 6 0.7254 -5.0986 0.8145 14 1 -0.1943 -4.5600 1.0430 15 7 0.6502 -6.5236 1.1464 16 6 -0.2273 -6.9540 2.0744 17 8 -0.9566 -6.1600 2.6356 18 6 -0.3028 -8.3930 2.4099 19 6 -1.2143 -8.8231 3.3787 20 6 -1.2905 -10.1557 3.6874 21 6 -0.4360 -11.0388 3.0214 22 6 -0.2196 -12.4832 3.0743 23 6 0.7500 -12.7663 2.1873 24 7 1.1701 -11.6200 1.5718 25 1 1.8624 -11.5741 0.8939 26 6 0.4675 -10.5413 2.0562 27 7 0.4991 -9.2470 1.7896 28 6 1.2654 -4.8231 -0.5893 29 6 0.3203 -4.6174 -1.7736 30 6 1.4406 -5.1968 -2.6565 31 6 1.9576 -5.9198 -1.3995 32 1 -0.4851 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0016 34 1 2.8295 -5.0895 1.5024 35 1 1.8117 -3.7559 2.1993 36 1 1.2321 -7.1573 0.6983 37 1 -1.8565 -8.1113 3.8760 38 1 -1.9895 -10.5139 4.4288 39 1 -0.7401 -13.1887 3.7050 40 1 1.1399 -13.7540 1.9899 41 1 0.0984 -3.5703 -1.9795 42 1 -0.5726 -5.2413 -1.7344 43 1 1.0795 -5.8734 -3.4311 44 1 2.1281 -4.4426 -3.0395 45 1 1.5249 -6.9096 -1.2550 46 1 3.0435 -5.9129 -1.3064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078652984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 99.094162 kcal Electronic energy + Delta-G solvation = -28865.327398 eV Core-core repulsion = 24950.430761 eV Total energy + Delta-G solvation = -3914.896637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.87195 -40.53423 -39.19689 -37.49751 -35.00384 -34.12714 -33.32148 -32.24244 -30.44459 -29.96565 -29.28783 -25.48192 -25.27558 -24.15274 -24.11504 -23.24572 -22.23914 -21.16132 -20.44605 -20.29578 -18.78761 -18.22333 -17.43333 -16.91397 -16.68110 -15.93759 -15.56782 -15.15034 -15.10465 -14.95206 -14.59868 -14.44481 -13.99227 -13.72844 -13.67721 -13.47052 -12.99666 -12.64954 -12.61799 -12.35203 -12.28106 -12.09295 -11.87075 -11.57557 -11.33231 -10.86634 -10.81819 -10.80699 -10.68143 -10.30084 -10.17513 -9.99065 -9.78450 -9.69596 -9.51041 -9.37996 -8.83924 -8.82153 -8.55660 -8.41894 -6.96985 -5.76107 -3.05778 0.37108 1.03791 2.20675 2.34292 2.86792 3.29642 3.45420 3.49863 3.50971 3.79658 4.07960 4.31100 4.39499 4.54658 4.75901 4.83118 4.86628 4.95859 4.98655 5.05613 5.23806 5.28789 5.38352 5.41242 5.48787 5.50441 5.70717 5.86585 5.92314 5.97379 6.02532 6.03530 6.05987 6.10107 6.12978 6.17314 6.28526 6.48161 6.56186 6.62054 6.70015 6.75954 6.82101 6.86950 6.92636 7.12849 7.49633 7.71471 7.81479 8.37350 8.41949 9.52979 10.09341 10.44138 11.45809 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020789 B = 0.002428 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.575106 B =11531.089629 C =12263.183373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.700 5.700 10 C 0.198 3.802 11 H 0.068 0.932 12 C -0.181 4.181 13 C 0.135 3.865 14 H 0.116 0.884 15 N -0.693 5.693 16 C 0.566 3.434 17 O -0.528 6.528 18 C 0.125 3.875 19 C -0.141 4.141 20 C -0.038 4.038 21 C -0.136 4.136 22 C -0.201 4.201 23 C 0.070 3.930 24 N -0.581 5.581 25 H 0.421 0.579 26 C 0.280 3.720 27 N -0.470 5.470 28 C -0.123 4.123 29 C -0.125 4.125 30 C -0.133 4.133 31 C -0.116 4.116 32 H 0.257 0.743 33 H 0.387 0.613 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.405 0.595 37 H 0.152 0.848 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.180 0.820 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -28.780 2.386 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.338 5.338 10 C 0.084 3.916 11 H 0.086 0.914 12 C -0.224 4.224 13 C 0.032 3.968 14 H 0.134 0.866 15 N -0.342 5.342 16 C 0.350 3.650 17 O -0.404 6.404 18 C -0.022 4.022 19 C -0.163 4.163 20 C -0.064 4.064 21 C -0.143 4.143 22 C -0.227 4.227 23 C -0.057 4.057 24 N -0.187 5.187 25 H 0.259 0.741 26 C 0.045 3.955 27 N -0.186 5.186 28 C -0.126 4.126 29 C -0.162 4.162 30 C -0.171 4.171 31 C -0.154 4.154 32 H 0.067 0.933 33 H 0.222 0.778 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.242 0.758 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.197 0.803 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.692 -27.707 2.036 27.833 hybrid contribution 0.199 0.111 0.159 0.278 sum 1.891 -27.597 2.195 27.748 Atomic orbital electron populations 1.69652 1.05092 1.25921 1.56976 1.24757 0.95507 0.97723 1.02642 0.86260 0.78516 0.83498 0.77826 1.21264 1.21710 1.21230 1.19200 0.91017 0.83834 1.43463 0.91065 1.42100 1.05823 0.99081 1.86748 1.20622 0.94516 0.84638 0.91786 0.91373 1.24298 0.96350 0.99642 1.02074 1.22513 0.99870 0.79082 0.95377 0.86614 1.45931 1.38456 1.10049 1.39801 1.17829 0.80902 0.85842 0.80405 1.90827 1.42810 1.54593 1.52152 1.20964 0.93588 0.92891 0.94768 1.21595 0.99842 0.96462 0.98445 1.20691 0.96526 0.91669 0.97509 1.20091 0.99367 0.95141 0.99737 1.21678 1.03103 0.93099 1.04799 1.21959 0.97809 0.90192 0.95702 1.41567 1.35343 1.04231 1.37607 0.74066 1.18263 0.94495 0.87201 0.95568 1.66264 1.24219 1.00843 1.27283 1.23612 0.98524 0.98389 0.92079 1.22626 0.96051 1.02395 0.95176 1.22738 0.99031 0.99521 0.95766 1.22532 0.99784 0.96785 0.96253 0.93341 0.77820 0.91228 0.90803 0.75838 0.83051 0.84071 0.82962 0.80302 0.89843 0.91112 0.92358 0.90052 0.90645 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.70 -17.34 4.85 -53.00 -0.26 -17.60 16 10 C 0.20 3.92 4.36 -67.49 -0.29 3.63 16 11 H 0.07 1.34 8.10 -51.93 -0.42 0.92 16 12 C -0.18 -3.34 7.68 -25.76 -0.20 -3.53 16 13 C 0.14 2.38 4.03 -67.48 -0.27 2.11 16 14 H 0.12 2.40 7.46 -51.93 -0.39 2.01 16 15 N -0.69 -10.62 5.24 -54.28 -0.28 -10.91 16 16 C 0.57 9.31 7.80 -12.28 -0.10 9.22 16 17 O -0.53 -10.39 15.88 5.33 0.08 -10.30 16 18 C 0.13 1.74 6.74 -82.99 -0.56 1.19 16 19 C -0.14 -1.69 9.55 -39.45 -0.38 -2.07 16 20 C -0.04 -0.37 10.17 -39.46 -0.40 -0.77 16 21 C -0.14 -1.36 6.39 -105.00 -0.67 -2.03 16 22 C -0.20 -1.38 11.08 -37.76 -0.42 -1.80 16 23 C 0.07 0.37 11.81 -16.72 -0.20 0.17 16 24 N -0.58 -4.14 6.05 -12.10 -0.07 -4.21 16 25 H 0.42 1.99 8.96 -40.82 -0.37 1.63 16 26 C 0.28 3.05 8.43 -155.79 -1.31 1.74 16 27 N -0.47 -6.00 9.53 -8.82 -0.08 -6.08 16 28 C -0.12 -2.04 0.92 -154.71 -0.14 -2.19 16 29 C -0.12 -2.08 7.62 -26.28 -0.20 -2.28 16 30 C -0.13 -1.88 8.08 -25.74 -0.21 -2.09 16 31 C -0.12 -1.55 7.15 -26.28 -0.19 -1.74 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.39 10.32 7.61 -40.82 -0.31 10.01 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 36 H 0.41 5.48 6.33 -40.82 -0.26 5.22 16 37 H 0.15 1.75 7.60 -52.48 -0.40 1.35 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 40 H 0.18 0.19 8.06 -52.48 -0.42 -0.23 16 41 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.08 0.91 7.03 -51.93 -0.36 0.55 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -33.54 382.63 -11.18 -44.72 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -6.25 Total: 16.24 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -5.78 Total: -7.68 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 0.03 Total: -66.12 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.54 -11.18 -44.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078652984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.814 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds