Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86808 * 119.99600 * 2 1 4 4 H 1.48500 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47170 * 299.99685 * 3 2 1 6 6 H 1.48499 * 109.47252 * 60.00058 * 3 2 1 7 7 C 1.38804 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00270 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99888 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.88905 * 333.16105 * 10 9 7 12 12 C 1.53951 * 113.66132 * 104.50606 * 10 9 7 13 13 C 1.53954 * 87.29523 * 89.82933 * 12 10 9 14 14 H 1.09000 * 113.66488 * 139.29918 * 13 12 10 15 15 N 1.46495 * 113.65906 * 270.26225 * 13 12 10 16 16 C 1.34776 * 120.00438 * 255.49275 * 15 13 12 17 17 O 1.21551 * 119.99748 * 0.02562 * 16 15 13 18 18 C 1.47949 * 120.00646 * 180.02562 * 16 15 13 19 19 C 1.39796 * 119.32251 * 179.72926 * 18 16 15 20 20 C 1.37011 * 119.45703 * 180.26091 * 19 18 16 21 21 C 1.39773 * 118.23747 * 0.03387 * 20 19 18 22 22 C 1.46154 * 134.24775 * 179.97438 * 21 20 19 23 23 C 1.34432 * 106.92093 * 179.97438 * 22 21 20 24 24 N 1.36723 * 110.00267 * 0.02562 * 23 22 21 25 25 H 0.97003 * 124.99944 * 180.02562 * 24 23 22 26 26 C 1.37551 * 110.00486 * 359.97438 * 24 23 22 27 27 N 1.32166 * 133.20284 * 180.02562 * 26 24 23 28 28 C 1.52908 * 86.78277 * 24.73387 * 13 12 10 29 29 C 1.52902 * 121.14181 * 209.37903 * 28 13 12 30 30 C 1.53953 * 86.78427 * 209.37746 * 29 28 13 31 31 C 1.52907 * 121.13487 * 100.81395 * 28 13 12 32 32 H 0.96998 * 120.00011 * 0.02562 * 1 2 3 33 33 H 0.96994 * 119.99517 * 0.02562 * 9 7 2 34 34 H 1.08996 * 113.58291 * 335.22585 * 12 10 9 35 35 H 1.08996 * 113.65266 * 204.44125 * 12 10 9 36 36 H 0.97003 * 120.00055 * 75.49697 * 15 13 12 37 37 H 1.07999 * 120.26971 * 0.27936 * 19 18 16 38 38 H 1.08000 * 120.88392 * 180.02562 * 20 19 18 39 39 H 1.07999 * 126.53598 * 359.97438 * 22 21 20 40 40 H 1.08003 * 124.99816 * 180.02562 * 23 22 21 41 41 H 1.08993 * 113.66714 * 323.85110 * 29 28 13 42 42 H 1.09007 * 113.66229 * 94.90993 * 29 28 13 43 43 H 1.08996 * 113.58214 * 270.13300 * 30 29 28 44 44 H 1.08995 * 113.65024 * 139.34596 * 30 29 28 45 45 H 1.08996 * 113.66549 * 265.09615 * 31 28 13 46 46 H 1.08994 * 113.66731 * 36.15728 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0462 -3.5757 -0.4528 12 6 2.0614 -4.3683 1.3657 13 6 0.7694 -5.0758 0.9178 14 1 0.7270 -6.1282 1.1986 15 7 -0.4517 -4.3443 1.2638 16 6 -1.2199 -4.7619 2.2894 17 8 -0.8992 -5.7454 2.9276 18 6 -2.4535 -4.0234 2.6385 19 6 -3.2427 -4.4726 3.7014 20 6 -4.3884 -3.7939 4.0236 21 6 -4.7250 -2.6679 3.2670 22 6 -5.8293 -1.7109 3.2985 23 6 -5.6105 -0.8283 2.3084 24 7 -4.4564 -1.1443 1.6467 25 1 -4.0932 -0.6506 0.8949 26 6 -3.8857 -2.2645 2.2048 27 7 -2.7902 -2.9524 1.9337 28 6 1.2402 -4.8401 -0.5177 29 6 0.2387 -4.6689 -1.6603 30 6 1.3161 -5.2723 -2.5796 31 6 1.8948 -5.9588 -1.3289 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0002 34 1 1.9188 -3.6934 2.2096 35 1 2.9040 -5.0457 1.5037 36 1 -0.7075 -3.5592 0.7547 37 1 -2.9514 -5.3472 4.2641 38 1 -5.0150 -4.1204 4.8405 39 1 -6.6621 -1.7126 3.9860 40 1 -6.2519 0.0074 2.0705 41 1 -0.6500 -5.2921 -1.5602 42 1 0.0048 -3.6282 -1.8850 43 1 1.9826 -4.5289 -3.0167 44 1 0.9206 -5.9710 -3.3168 45 1 2.9840 -5.9486 -1.2888 46 1 1.4716 -6.9445 -1.1357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078652986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 102.356403 kcal Electronic energy + Delta-G solvation = -29910.649843 eV Core-core repulsion = 25995.894668 eV Total energy + Delta-G solvation = -3914.755176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.47595 -40.53383 -38.95031 -37.18176 -35.19719 -33.68255 -33.01694 -32.02192 -30.08040 -29.89035 -29.15916 -25.47611 -25.02559 -24.11696 -24.08372 -23.02841 -22.08355 -20.76416 -20.48364 -19.90220 -18.46839 -18.24116 -17.13320 -16.97667 -16.31082 -15.67118 -15.19067 -15.12655 -14.95109 -14.69767 -14.43653 -14.30977 -13.91621 -13.59884 -13.31017 -13.19990 -13.00627 -12.84319 -12.52345 -12.09158 -12.01494 -11.98226 -11.80818 -11.47737 -11.29957 -10.93629 -10.84823 -10.66423 -10.44500 -10.16847 -10.09426 -10.00308 -9.67486 -9.66941 -9.40142 -9.16302 -8.86488 -8.51493 -8.33655 -8.05644 -7.02194 -5.83523 -3.11971 0.75093 1.39006 2.59591 2.81656 3.13652 3.38062 3.44415 3.45703 3.48825 4.14786 4.43268 4.51419 4.67543 4.74914 4.81405 4.98451 5.04608 5.16092 5.20025 5.21171 5.33575 5.38136 5.46007 5.62600 5.70119 5.72502 5.81610 5.90706 5.94060 6.02697 6.04706 6.06950 6.19299 6.25354 6.34158 6.39026 6.40412 6.49154 6.56397 6.67341 6.74726 6.84172 6.96565 6.99536 7.15412 7.30569 7.67638 7.88403 8.14198 8.34496 8.61021 9.45811 10.01910 10.35891 11.37870 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008154 B = 0.004765 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.102631 B = 5874.490122 C = 8181.659134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.191 3.809 11 H 0.064 0.936 12 C -0.185 4.185 13 C 0.135 3.865 14 H 0.091 0.909 15 N -0.675 5.675 16 C 0.574 3.426 17 O -0.546 6.546 18 C 0.118 3.882 19 C -0.144 4.144 20 C -0.044 4.044 21 C -0.136 4.136 22 C -0.210 4.210 23 C 0.075 3.925 24 N -0.574 5.574 25 H 0.427 0.573 26 C 0.287 3.713 27 N -0.448 5.448 28 C -0.127 4.127 29 C -0.127 4.127 30 C -0.134 4.134 31 C -0.106 4.106 32 H 0.252 0.748 33 H 0.383 0.617 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.418 0.582 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.178 0.822 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.005 -7.423 2.215 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.340 5.340 10 C 0.079 3.921 11 H 0.082 0.918 12 C -0.227 4.227 13 C 0.030 3.970 14 H 0.109 0.891 15 N -0.326 5.326 16 C 0.359 3.641 17 O -0.424 6.424 18 C -0.030 4.030 19 C -0.166 4.166 20 C -0.070 4.070 21 C -0.144 4.144 22 C -0.235 4.235 23 C -0.054 4.054 24 N -0.179 5.179 25 H 0.266 0.734 26 C 0.051 3.949 27 N -0.163 5.163 28 C -0.130 4.130 29 C -0.164 4.164 30 C -0.171 4.171 31 C -0.144 4.144 32 H 0.062 0.938 33 H 0.218 0.782 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.258 0.742 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.195 0.805 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.088 -7.526 1.809 11.937 hybrid contribution -0.371 1.511 0.204 1.569 sum -9.459 -6.016 2.013 11.389 Atomic orbital electron populations 1.69687 1.04948 1.25258 1.57483 1.24713 0.95549 0.97570 1.02775 0.86134 0.78954 0.84149 0.77031 1.20522 1.21933 1.22020 1.19292 0.91145 0.83750 1.42825 0.90923 1.42140 1.05498 0.99280 1.87043 1.20872 0.94307 0.84750 0.92218 0.91753 1.24281 0.96243 1.00213 1.01997 1.21689 0.84246 0.95752 0.95348 0.89085 1.45606 1.23157 1.31426 1.32435 1.17781 0.82308 0.83486 0.80554 1.90735 1.72610 1.26797 1.52269 1.20803 0.95899 0.92080 0.94202 1.21488 0.95014 1.01901 0.98226 1.20590 0.95831 0.92612 0.97997 1.20090 0.97733 0.98244 0.98325 1.21592 1.00975 0.97676 1.03285 1.21961 0.88550 1.00406 0.94441 1.41688 1.20972 1.24003 1.31260 0.73372 1.18230 0.92094 0.90732 0.93805 1.66331 1.14927 1.05738 1.29269 1.23511 0.98721 0.98753 0.91969 1.22574 0.96215 1.02061 0.95576 1.22750 0.98848 0.99632 0.95914 1.22510 0.99949 0.96542 0.95371 0.93809 0.78168 0.90946 0.90417 0.74238 0.83491 0.84410 0.83209 0.80469 0.90947 0.90247 0.90093 0.92196 0.91314 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.42 9.98 -15.06 -0.15 -6.57 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.70 -16.83 4.77 -52.99 -0.25 -17.08 16 10 C 0.19 3.78 4.35 -67.48 -0.29 3.49 16 11 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 12 C -0.19 -3.46 7.68 -25.75 -0.20 -3.65 16 13 C 0.14 2.42 4.08 -67.48 -0.28 2.14 16 14 H 0.09 1.60 7.54 -51.93 -0.39 1.20 16 15 N -0.68 -13.01 4.91 -54.28 -0.27 -13.28 16 16 C 0.57 11.13 7.80 -12.28 -0.10 11.03 16 17 O -0.55 -11.19 15.92 5.32 0.08 -11.11 16 18 C 0.12 2.13 6.74 -82.99 -0.56 1.58 16 19 C -0.14 -2.16 9.55 -39.44 -0.38 -2.54 16 20 C -0.04 -0.57 10.17 -39.45 -0.40 -0.97 16 21 C -0.14 -1.93 6.39 -105.00 -0.67 -2.60 16 22 C -0.21 -2.28 11.08 -37.75 -0.42 -2.70 16 23 C 0.07 0.75 11.81 -16.71 -0.20 0.55 16 24 N -0.57 -7.66 6.05 -12.10 -0.07 -7.74 16 25 H 0.43 5.40 8.96 -40.82 -0.37 5.04 16 26 C 0.29 4.74 8.43 -155.80 -1.31 3.42 16 27 N -0.45 -8.38 9.53 -8.82 -0.08 -8.47 16 28 C -0.13 -2.12 0.77 -154.72 -0.12 -2.24 16 29 C -0.13 -2.08 7.18 -26.28 -0.19 -2.26 16 30 C -0.13 -1.88 8.08 -25.75 -0.21 -2.09 16 31 C -0.11 -1.44 7.84 -26.28 -0.21 -1.64 16 32 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.38 9.63 5.13 -40.82 -0.21 9.42 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.42 8.69 5.50 -40.82 -0.22 8.47 16 37 H 0.15 2.01 7.60 -52.49 -0.40 1.61 16 38 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.18 1.02 8.06 -52.48 -0.42 0.59 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.52 7.51 -51.92 -0.39 1.13 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -31.89 380.22 -11.10 -42.99 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -6.18 Total: 23.06 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -5.77 Total: -5.42 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: 0.05 Total: -72.17 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.89 -11.10 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078652986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.346 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds