Wall clock time and date at job start Sat Apr 11 2020 06:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48495 * 109.47159 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47290 * 299.99668 * 3 2 1 6 6 H 1.48503 * 109.47163 * 59.99673 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.54147 * 87.22650 * 220.82548 * 12 10 9 14 14 H 1.09000 * 113.72020 * 139.14871 * 13 12 10 15 15 N 1.46499 * 113.66462 * 270.17248 * 13 12 10 16 16 C 1.34780 * 119.99733 * 252.22222 * 15 13 12 17 17 O 1.21648 * 120.00089 * 0.02562 * 16 15 13 18 18 C 1.47069 * 119.99845 * 179.97438 * 16 15 13 19 19 C 1.35898 * 125.42403 * 179.69303 * 18 16 15 20 20 C 1.41434 * 107.67729 * 179.90858 * 19 18 16 21 21 C 1.39835 * 134.35188 * 180.02562 * 20 19 18 22 22 N 1.31560 * 120.04435 * 180.33254 * 21 20 19 23 23 C 1.32361 * 122.31755 * 359.97438 * 22 21 20 24 24 C 1.36636 * 121.64614 * 0.02562 * 23 22 21 25 25 C 1.39434 * 119.01529 * 359.97438 * 24 23 22 26 26 N 1.36871 * 134.32728 * 179.97438 * 25 24 23 27 27 H 0.97002 * 125.59364 * 0.04634 * 26 25 24 28 28 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 29 29 C 1.52914 * 121.13623 * 13.65051 * 28 10 9 30 30 C 1.53952 * 86.78154 * 209.37981 * 29 28 10 31 31 C 1.52905 * 121.13816 * 265.08992 * 28 10 9 32 32 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 34 34 H 1.08996 * 113.58203 * 335.39952 * 12 10 9 35 35 H 1.09000 * 113.58047 * 106.19424 * 12 10 9 36 36 H 0.96998 * 119.99784 * 72.22350 * 15 13 12 37 37 H 1.08003 * 126.16267 * 0.02562 * 19 18 16 38 38 H 1.08003 * 119.97666 * 0.32913 * 21 20 19 39 39 H 1.08002 * 119.17701 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.49297 * 180.02562 * 24 23 22 41 41 H 1.08995 * 113.66107 * 323.84906 * 29 28 10 42 42 H 1.09001 * 113.65891 * 94.90690 * 29 28 10 43 43 H 1.09000 * 113.57991 * 270.13018 * 30 29 28 44 44 H 1.08999 * 113.65131 * 139.34966 * 30 29 28 45 45 H 1.09003 * 113.66164 * 265.09185 * 31 28 10 46 46 H 1.08998 * 113.66755 * 36.14599 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 1.8389 -5.6973 -0.5452 14 1 1.1189 -6.3833 -0.9914 15 7 3.0969 -6.3516 -0.1772 16 6 3.4698 -7.4903 -0.7944 17 8 2.7621 -7.9744 -1.6573 18 6 4.7330 -8.1469 -0.4255 19 6 5.2114 -9.2966 -0.9697 20 6 6.4465 -9.5863 -0.3444 21 6 7.3916 -10.6088 -0.4737 22 7 8.4720 -10.6060 0.2770 23 6 8.7113 -9.6579 1.1690 24 6 7.8434 -8.6206 1.3631 25 6 6.6778 -8.5622 0.6002 26 7 5.6209 -7.6952 0.5334 27 1 5.5121 -6.8952 1.0711 28 6 1.2507 -4.8285 0.5673 29 6 -0.2609 -4.7214 0.7713 30 6 -0.0890 -5.7263 1.9250 31 6 1.3670 -5.2385 2.0358 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 1.1736 -4.1326 -1.9656 35 1 2.9756 -4.3471 -1.8854 36 1 3.6614 -5.9654 0.5106 37 1 4.7352 -9.8825 -1.7420 38 1 7.2344 -11.4014 -1.1903 39 1 9.6148 -9.7059 1.7589 40 1 8.0575 -7.8567 2.0960 41 1 -0.5896 -3.7344 1.0964 42 1 -0.8437 -5.1098 -0.0640 43 1 -0.1777 -6.7671 1.6135 44 1 -0.6945 -5.4940 2.8010 45 1 2.0848 -6.0400 2.2107 46 1 1.4958 -4.3968 2.7162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078660608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:06 Heat of formation + Delta-G solvation = 92.629403 kcal Electronic energy + Delta-G solvation = -28757.682627 eV Core-core repulsion = 24842.505657 eV Total energy + Delta-G solvation = -3915.176970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -42.19635 -40.74168 -39.19847 -38.01092 -35.22892 -34.27099 -32.78463 -32.51099 -31.01314 -29.98436 -29.47509 -25.67363 -25.50228 -24.47466 -24.03815 -23.19476 -22.51391 -21.71920 -20.68757 -20.21630 -19.23207 -18.00393 -17.76598 -17.24764 -16.15005 -15.85370 -15.79699 -15.59011 -15.32697 -15.02959 -14.69865 -14.54345 -14.49005 -14.09340 -13.94157 -13.56308 -13.41040 -13.04491 -12.81368 -12.57523 -12.22272 -11.95726 -11.86522 -11.74647 -11.49609 -11.02896 -10.92575 -10.77973 -10.46573 -10.40933 -10.26751 -10.16677 -9.98497 -9.88197 -9.77953 -9.48769 -9.22670 -8.96515 -8.91570 -8.32341 -7.05214 -5.87845 -3.16688 0.28295 1.17557 1.71038 2.39869 2.83789 3.06671 3.35536 3.41429 3.43683 3.59435 4.16053 4.19091 4.40038 4.49383 4.58237 4.60805 4.72979 4.84170 4.91270 4.93359 5.08109 5.09265 5.12866 5.33564 5.37852 5.48193 5.53626 5.62765 5.71263 5.80758 5.88859 5.91373 5.96502 5.99811 6.08037 6.11126 6.15542 6.24062 6.30028 6.33739 6.44394 6.51486 6.66740 6.79657 6.84757 6.92406 7.31546 7.60090 7.74604 7.92759 8.30801 9.42570 9.99455 10.34145 11.34380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.002529 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.369623 B =11069.687865 C =12084.001444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.180 3.820 11 H 0.071 0.929 12 C -0.174 4.174 13 C 0.142 3.858 14 H 0.101 0.899 15 N -0.699 5.699 16 C 0.584 3.416 17 O -0.519 6.519 18 C 0.021 3.979 19 C -0.090 4.090 20 C -0.175 4.175 21 C 0.177 3.823 22 N -0.507 5.507 23 C 0.104 3.896 24 C -0.181 4.181 25 C 0.141 3.859 26 N -0.569 5.569 27 H 0.422 0.578 28 C -0.125 4.125 29 C -0.104 4.104 30 C -0.140 4.140 31 C -0.123 4.123 32 H 0.256 0.744 33 H 0.387 0.613 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.395 0.605 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.969 -19.280 3.888 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.068 3.932 11 H 0.089 0.911 12 C -0.216 4.216 13 C 0.037 3.963 14 H 0.119 0.881 15 N -0.348 5.348 16 C 0.369 3.631 17 O -0.394 6.394 18 C -0.088 4.088 19 C -0.118 4.118 20 C -0.183 4.183 21 C 0.010 3.990 22 N -0.217 5.217 23 C -0.043 4.043 24 C -0.203 4.203 25 C 0.023 3.977 26 N -0.174 5.174 27 H 0.260 0.740 28 C -0.128 4.128 29 C -0.142 4.142 30 C -0.177 4.177 31 C -0.161 4.161 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.127 -19.900 3.305 23.038 hybrid contribution -0.202 2.403 0.733 2.521 sum 10.925 -17.497 4.038 21.019 Atomic orbital electron populations 1.69661 1.05107 1.25735 1.57276 1.24755 0.95519 0.97766 1.02667 0.86137 0.78767 0.84111 0.77250 1.20592 1.21781 1.21835 1.19304 0.91017 0.84176 1.43140 0.91190 1.42367 1.05897 0.99551 1.86784 1.21372 0.94439 0.85148 0.92260 0.91073 1.24350 1.02079 0.94805 1.00399 1.21647 0.84548 0.93627 0.96500 0.88098 1.45516 1.23792 1.24851 1.40633 1.17102 0.83644 0.80409 0.81933 1.90864 1.52776 1.64556 1.31245 1.20374 0.93374 0.98551 0.96457 1.20882 0.94081 0.95676 1.01187 1.19234 0.98615 0.98906 1.01496 1.22536 0.87099 0.94672 0.94726 1.67675 1.20506 1.26536 1.06976 1.22108 0.98282 0.89179 0.94763 1.20829 0.93763 1.02732 1.03017 1.18378 0.90199 0.91250 0.97883 1.41907 1.17451 1.23825 1.34206 0.73962 1.23438 0.98014 0.97722 0.93599 1.22465 0.93423 1.00342 0.97924 1.22825 0.96995 0.98835 0.99075 1.22641 0.96676 1.00300 0.96481 0.93424 0.77726 0.89255 0.92224 0.77072 0.81960 0.82082 0.82522 0.84814 0.88341 0.91677 0.90908 0.91781 0.92581 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.71 -16.45 5.32 -52.99 -0.28 -16.73 16 10 C 0.18 3.24 4.26 -67.48 -0.29 2.95 16 11 H 0.07 1.25 8.11 -51.93 -0.42 0.83 16 12 C -0.17 -2.90 7.70 -25.64 -0.20 -3.10 16 13 C 0.14 2.00 4.13 -67.38 -0.28 1.73 16 14 H 0.10 1.53 7.46 -51.93 -0.39 1.14 16 15 N -0.70 -8.22 4.80 -54.45 -0.26 -8.48 16 16 C 0.58 7.47 7.80 -12.68 -0.10 7.37 16 17 O -0.52 -8.36 16.44 5.24 0.09 -8.28 16 18 C 0.02 0.23 6.97 -82.22 -0.57 -0.34 16 19 C -0.09 -0.93 10.53 -39.20 -0.41 -1.34 16 20 C -0.18 -1.74 6.21 -106.95 -0.66 -2.40 16 21 C 0.18 1.60 11.29 -17.07 -0.19 1.41 16 22 N -0.51 -5.01 10.33 -13.18 -0.14 -5.15 16 23 C 0.10 0.85 11.09 -17.90 -0.20 0.65 16 24 C -0.18 -1.41 10.09 -39.71 -0.40 -1.81 16 25 C 0.14 1.32 7.32 -84.04 -0.62 0.70 16 26 N -0.57 -4.87 6.05 -7.31 -0.04 -4.91 16 27 H 0.42 2.57 8.12 -40.82 -0.33 2.24 16 28 C -0.13 -1.84 0.92 -154.71 -0.14 -1.98 16 29 C -0.10 -1.55 7.15 -26.28 -0.19 -1.74 16 30 C -0.14 -1.77 8.08 -25.75 -0.21 -1.98 16 31 C -0.12 -1.60 7.62 -26.28 -0.20 -1.80 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.39 9.56 6.17 -40.82 -0.25 9.31 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 3.78 7.47 -40.82 -0.30 3.47 16 37 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.10 1.71 6.99 -51.93 -0.36 1.35 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.62 7.58 -51.93 -0.39 0.23 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 382.64 15.07 5.77 5.77 Total: -1.00 -32.09 382.64 -10.30 -42.39 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -6.23 Total: 13.70 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -4.90 Total: -8.68 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: 0.00 Total: -61.54 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.09 -10.30 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.019 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds