Wall clock time and date at job start Sat Apr 11 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00329 * 2 1 4 4 H 1.48497 * 109.46879 * 269.99669 * 3 2 1 5 5 H 1.48499 * 109.46943 * 29.99495 * 3 2 1 6 6 H 1.48500 * 109.47342 * 150.00048 * 3 2 1 7 7 C 1.38815 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00119 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00165 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.88624 * 336.34761 * 10 9 7 12 12 C 1.53950 * 113.74878 * 107.77350 * 10 9 7 13 13 C 1.53958 * 87.29830 * 139.21648 * 12 10 9 14 14 H 1.08998 * 113.74256 * 89.75405 * 13 12 10 15 15 N 1.46498 * 113.66313 * 220.79819 * 13 12 10 16 16 C 1.34775 * 119.99711 * 252.18300 * 15 13 12 17 17 O 1.21641 * 120.00061 * 0.02562 * 16 15 13 18 18 C 1.47068 * 119.99676 * 180.02562 * 16 15 13 19 19 C 1.35908 * 125.42141 * 180.02562 * 18 16 15 20 20 C 1.41437 * 107.67070 * 179.97438 * 19 18 16 21 21 C 1.39844 * 134.34204 * 179.70705 * 20 19 18 22 22 N 1.31563 * 120.03576 * 179.82370 * 21 20 19 23 23 C 1.32364 * 122.32272 * 0.51201 * 22 21 20 24 24 C 1.36648 * 121.64350 * 359.73242 * 23 22 21 25 25 C 1.39433 * 119.01350 * 0.02562 * 24 23 22 26 26 N 1.36875 * 134.32721 * 179.97438 * 25 24 23 27 27 H 0.97000 * 125.58833 * 0.03534 * 26 25 24 28 28 C 1.52911 * 86.77964 * 335.27104 * 13 12 10 29 29 C 1.52910 * 121.13648 * 259.17734 * 28 13 12 30 30 C 1.53946 * 86.78653 * 209.38106 * 29 28 13 31 31 C 1.52911 * 121.13961 * 150.61753 * 28 13 12 32 32 H 0.96999 * 119.99343 * 0.02562 * 1 2 3 33 33 H 0.97002 * 119.99803 * 0.02562 * 9 7 2 34 34 H 1.09004 * 113.57874 * 24.61804 * 12 10 9 35 35 H 1.08995 * 113.58244 * 253.82110 * 12 10 9 36 36 H 0.97006 * 119.99814 * 72.18870 * 15 13 12 37 37 H 1.07998 * 126.16203 * 359.97438 * 19 18 16 38 38 H 1.07996 * 119.98266 * 0.31892 * 21 20 19 39 39 H 1.07998 * 119.18007 * 179.71422 * 23 22 21 40 40 H 1.07999 * 120.48974 * 180.02562 * 24 23 22 41 41 H 1.09001 * 113.66178 * 323.85459 * 29 28 13 42 42 H 1.09005 * 113.66625 * 94.90737 * 29 28 13 43 43 H 1.09000 * 113.57973 * 270.13068 * 30 29 28 44 44 H 1.08997 * 113.58144 * 139.33417 * 30 29 28 45 45 H 1.08997 * 113.66192 * 265.09082 * 31 28 13 46 46 H 1.09001 * 113.65481 * 36.14513 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 3.0665 -3.5644 -0.4002 12 6 1.9953 -4.4076 1.3453 13 6 1.8267 -5.7027 0.5300 14 1 2.7695 -6.1865 0.2747 15 7 0.8452 -6.6308 1.0969 16 6 1.2579 -7.7684 1.6902 17 8 2.4453 -8.0243 1.7553 18 6 0.2725 -8.7004 2.2588 19 6 0.5647 -9.8736 2.8795 20 6 -0.6571 -10.4645 3.2778 21 6 -1.0007 -11.6483 3.9382 22 7 -2.2645 -11.9272 4.1751 23 6 -3.2485 -11.1254 3.8000 24 6 -3.0061 -9.9508 3.1452 25 6 -1.6880 -9.5914 2.8664 26 7 -1.0987 -8.5227 2.2468 27 1 -1.5662 -7.7642 1.8634 28 6 1.2655 -4.8235 -0.5882 29 6 -0.2407 -4.7151 -0.8283 30 6 0.1009 -4.4628 -2.3080 31 6 1.4181 -5.2193 -2.0573 32 1 -0.4849 0.8401 -0.0004 33 1 0.3555 -2.3881 0.0016 34 1 1.1221 -4.1541 1.9464 35 1 2.9258 -4.3669 1.9114 36 1 -0.1017 -6.4265 1.0452 37 1 1.5519 -10.2812 3.0397 38 1 -0.2279 -12.3301 4.2611 39 1 -4.2685 -11.4066 4.0166 40 1 -3.8234 -9.3103 2.8480 41 1 -0.7793 -5.6470 -0.6564 42 1 -0.7022 -3.8602 -0.3339 43 1 0.2424 -3.4093 -2.5494 44 1 -0.5681 -4.9706 -3.0027 45 1 2.2819 -4.7673 -2.5447 46 1 1.3457 -6.2930 -2.2308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078660609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:17 Heat of formation + Delta-G solvation = 92.155946 kcal Electronic energy + Delta-G solvation = -28733.517847 eV Core-core repulsion = 24818.320346 eV Total energy + Delta-G solvation = -3915.197501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -42.17839 -40.69280 -39.20716 -38.00048 -35.03287 -34.30820 -32.80481 -32.62443 -31.01652 -30.02008 -29.50023 -25.66164 -25.57792 -24.27371 -24.15983 -23.18144 -22.45797 -21.43105 -20.61178 -20.37296 -19.17288 -18.07097 -17.82565 -16.99088 -16.37548 -15.99656 -15.72582 -15.65432 -15.13325 -15.00046 -14.67425 -14.56063 -14.51501 -14.20477 -13.92451 -13.48540 -13.13394 -13.05196 -12.85976 -12.60571 -12.20796 -11.98361 -11.84940 -11.63090 -11.32991 -11.02039 -10.88718 -10.82548 -10.45418 -10.37921 -10.25135 -10.13733 -10.03801 -9.88970 -9.80914 -9.55367 -9.21359 -8.94372 -8.87425 -8.30701 -7.06956 -5.88505 -3.17153 0.29655 1.18447 1.72900 2.41426 2.93904 3.09750 3.36898 3.43217 3.44101 3.60273 4.16977 4.20257 4.42567 4.51080 4.59300 4.66321 4.73970 4.80659 4.92322 4.95161 5.08463 5.11540 5.14886 5.33482 5.38805 5.49174 5.56286 5.63981 5.75044 5.76401 5.85594 5.88628 5.95150 5.98176 6.07744 6.16674 6.23143 6.27215 6.38228 6.39070 6.46286 6.48927 6.73859 6.79382 6.84503 6.94184 7.36263 7.61917 7.75366 7.96178 8.30270 9.42208 9.97475 10.32291 11.33731 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.002293 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.598023 B =12208.722591 C =12435.184808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.705 5.705 10 C 0.194 3.806 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.115 0.885 15 N -0.706 5.706 16 C 0.580 3.420 17 O -0.522 6.522 18 C 0.021 3.979 19 C -0.092 4.092 20 C -0.175 4.175 21 C 0.177 3.823 22 N -0.507 5.507 23 C 0.104 3.896 24 C -0.180 4.180 25 C 0.140 3.860 26 N -0.569 5.569 27 H 0.421 0.579 28 C -0.120 4.120 29 C -0.118 4.118 30 C -0.129 4.129 31 C -0.126 4.126 32 H 0.256 0.744 33 H 0.386 0.614 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.134 0.866 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 -20.719 2.786 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.343 5.343 10 C 0.080 3.920 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.026 3.974 14 H 0.133 0.867 15 N -0.355 5.355 16 C 0.366 3.634 17 O -0.397 6.397 18 C -0.088 4.088 19 C -0.120 4.120 20 C -0.182 4.182 21 C 0.009 3.991 22 N -0.217 5.217 23 C -0.044 4.044 24 C -0.203 4.203 25 C 0.022 3.978 26 N -0.174 5.174 27 H 0.260 0.740 28 C -0.123 4.123 29 C -0.156 4.156 30 C -0.166 4.166 31 C -0.163 4.163 32 H 0.066 0.934 33 H 0.222 0.778 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.539 -21.267 3.157 21.974 hybrid contribution -0.540 2.288 -0.604 2.428 sum -5.079 -18.979 2.553 19.812 Atomic orbital electron populations 1.69649 1.05134 1.25833 1.57405 1.24747 0.95524 0.97782 1.02644 0.86188 0.78737 0.83705 0.77553 1.21660 1.21780 1.20676 1.19299 0.91144 0.84045 1.43042 0.90994 1.42335 1.05787 0.99471 1.86742 1.21045 0.94829 0.84337 0.91745 0.89868 1.24300 1.01978 0.94979 1.00386 1.22422 0.92388 0.87552 0.95081 0.86730 1.45918 1.10628 1.20894 1.58060 1.17168 0.87285 0.80637 0.78340 1.90853 1.15609 1.75224 1.58039 1.20451 0.81944 0.99044 1.07362 1.20884 0.98186 0.93304 0.99582 1.19240 0.93551 0.98406 1.07021 1.22536 0.93286 0.92249 0.90995 1.67672 1.00163 1.32955 1.20912 1.22108 0.98672 0.89694 0.93891 1.20830 0.93390 1.00428 1.05682 1.18382 0.94411 0.88567 0.96426 1.41907 1.05491 1.20000 1.50002 0.74022 1.23648 0.97263 0.98073 0.93269 1.22428 0.94458 1.00893 0.97774 1.22723 0.96662 1.01694 0.95567 1.22710 0.98658 0.99243 0.95734 0.93430 0.77816 0.90213 0.91814 0.77148 0.81980 0.82090 0.82525 0.84828 0.91562 0.90194 0.88981 0.92497 0.91292 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.24 -6.40 9.97 -15.06 -0.15 -6.55 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.70 -16.15 5.33 -52.99 -0.28 -16.43 16 10 C 0.19 3.52 4.36 -67.48 -0.29 3.23 16 11 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 12 C -0.17 -2.87 7.69 -25.75 -0.20 -3.07 16 13 C 0.13 1.82 4.12 -67.48 -0.28 1.54 16 14 H 0.11 1.69 7.46 -51.93 -0.39 1.31 16 15 N -0.71 -8.41 5.25 -54.56 -0.29 -8.69 16 16 C 0.58 7.55 7.80 -12.68 -0.10 7.45 16 17 O -0.52 -8.47 16.44 5.24 0.09 -8.38 16 18 C 0.02 0.23 6.97 -82.22 -0.57 -0.34 16 19 C -0.09 -0.96 10.53 -39.20 -0.41 -1.38 16 20 C -0.18 -1.76 6.21 -106.94 -0.66 -2.43 16 21 C 0.18 1.63 11.29 -17.07 -0.19 1.43 16 22 N -0.51 -5.08 10.33 -13.18 -0.14 -5.22 16 23 C 0.10 0.86 11.09 -17.90 -0.20 0.67 16 24 C -0.18 -1.44 10.09 -39.71 -0.40 -1.84 16 25 C 0.14 1.34 7.32 -84.04 -0.62 0.72 16 26 N -0.57 -5.01 6.05 -7.31 -0.04 -5.05 16 27 H 0.42 2.68 8.12 -40.82 -0.33 2.34 16 28 C -0.12 -1.75 1.06 -154.71 -0.16 -1.91 16 29 C -0.12 -1.62 6.77 -26.28 -0.18 -1.80 16 30 C -0.13 -1.83 8.08 -25.75 -0.21 -2.04 16 31 C -0.13 -1.71 7.84 -26.28 -0.21 -1.91 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.39 9.30 5.92 -40.82 -0.24 9.05 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.39 3.87 6.09 -40.82 -0.25 3.62 16 37 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 41 H 0.07 0.73 7.03 -51.93 -0.36 0.36 16 42 H 0.08 1.29 6.42 -51.93 -0.33 0.96 16 43 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -31.61 380.39 -10.26 -41.87 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.10 Total: 14.19 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -4.93 Total: -8.61 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: -0.02 Total: -61.44 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.61 -10.26 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.022 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds