Wall clock time and date at job start Sat Apr 11 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00329 * 2 1 4 4 H 1.48497 * 109.46879 * 269.99669 * 3 2 1 5 5 H 1.48499 * 109.46943 * 29.99495 * 3 2 1 6 6 H 1.48500 * 109.47342 * 150.00048 * 3 2 1 7 7 C 1.38815 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00119 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00165 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.88624 * 336.34761 * 10 9 7 12 12 C 1.53950 * 113.74878 * 107.77350 * 10 9 7 13 13 C 1.53958 * 87.29830 * 139.21648 * 12 10 9 14 14 H 1.08998 * 113.74256 * 89.75405 * 13 12 10 15 15 N 1.46498 * 113.66313 * 220.79819 * 13 12 10 16 16 C 1.34775 * 119.99711 * 252.18300 * 15 13 12 17 17 O 1.21641 * 120.00061 * 0.02562 * 16 15 13 18 18 C 1.47068 * 119.99676 * 180.02562 * 16 15 13 19 19 C 1.35908 * 125.42141 * 180.02562 * 18 16 15 20 20 C 1.41437 * 107.67070 * 179.97438 * 19 18 16 21 21 C 1.39844 * 134.34204 * 179.70705 * 20 19 18 22 22 N 1.31563 * 120.03576 * 179.82370 * 21 20 19 23 23 C 1.32364 * 122.32272 * 0.51201 * 22 21 20 24 24 C 1.36648 * 121.64350 * 359.73242 * 23 22 21 25 25 C 1.39433 * 119.01350 * 0.02562 * 24 23 22 26 26 N 1.36875 * 134.32721 * 179.97438 * 25 24 23 27 27 H 0.97000 * 125.58833 * 0.03534 * 26 25 24 28 28 C 1.52911 * 86.77964 * 335.27104 * 13 12 10 29 29 C 1.52910 * 121.13648 * 259.17734 * 28 13 12 30 30 C 1.53946 * 86.78653 * 209.38106 * 29 28 13 31 31 C 1.52911 * 121.13961 * 150.61753 * 28 13 12 32 32 H 0.96999 * 119.99343 * 0.02562 * 1 2 3 33 33 H 0.97002 * 119.99803 * 0.02562 * 9 7 2 34 34 H 1.09004 * 113.57874 * 24.61804 * 12 10 9 35 35 H 1.08995 * 113.58244 * 253.82110 * 12 10 9 36 36 H 0.97006 * 119.99814 * 72.18870 * 15 13 12 37 37 H 1.07998 * 126.16203 * 359.97438 * 19 18 16 38 38 H 1.07996 * 119.98266 * 0.31892 * 21 20 19 39 39 H 1.07998 * 119.18007 * 179.71422 * 23 22 21 40 40 H 1.07999 * 120.48974 * 180.02562 * 24 23 22 41 41 H 1.09001 * 113.66178 * 323.85459 * 29 28 13 42 42 H 1.09005 * 113.66625 * 94.90737 * 29 28 13 43 43 H 1.09000 * 113.57973 * 270.13068 * 30 29 28 44 44 H 1.08997 * 113.58144 * 139.33417 * 30 29 28 45 45 H 1.08997 * 113.66192 * 265.09082 * 31 28 13 46 46 H 1.09001 * 113.65481 * 36.14513 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 1 3.0665 -3.5644 -0.4002 12 6 1.9953 -4.4076 1.3453 13 6 1.8267 -5.7027 0.5300 14 1 2.7695 -6.1865 0.2747 15 7 0.8452 -6.6308 1.0969 16 6 1.2579 -7.7684 1.6902 17 8 2.4453 -8.0243 1.7553 18 6 0.2725 -8.7004 2.2588 19 6 0.5647 -9.8736 2.8795 20 6 -0.6571 -10.4645 3.2778 21 6 -1.0007 -11.6483 3.9382 22 7 -2.2645 -11.9272 4.1751 23 6 -3.2485 -11.1254 3.8000 24 6 -3.0061 -9.9508 3.1452 25 6 -1.6880 -9.5914 2.8664 26 7 -1.0987 -8.5227 2.2468 27 1 -1.5662 -7.7642 1.8634 28 6 1.2655 -4.8235 -0.5882 29 6 -0.2407 -4.7151 -0.8283 30 6 0.1009 -4.4628 -2.3080 31 6 1.4181 -5.2193 -2.0573 32 1 -0.4849 0.8401 -0.0004 33 1 0.3555 -2.3881 0.0016 34 1 1.1221 -4.1541 1.9464 35 1 2.9258 -4.3669 1.9114 36 1 -0.1017 -6.4265 1.0452 37 1 1.5519 -10.2812 3.0397 38 1 -0.2279 -12.3301 4.2611 39 1 -4.2685 -11.4066 4.0166 40 1 -3.8234 -9.3103 2.8480 41 1 -0.7793 -5.6470 -0.6564 42 1 -0.7022 -3.8602 -0.3339 43 1 0.2424 -3.4093 -2.5494 44 1 -0.5681 -4.9706 -3.0027 45 1 2.2819 -4.7673 -2.5447 46 1 1.3457 -6.2930 -2.2308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078660609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:14 Heat of formation + Delta-G solvation = 71.846464 kcal Electronic energy + Delta-G solvation = -28734.398532 eV Core-core repulsion = 24818.320346 eV Total energy + Delta-G solvation = -3916.078186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.91667 -41.89531 -40.21614 -38.78601 -36.31748 -35.85755 -34.18685 -33.41723 -32.06747 -31.45085 -30.30975 -26.91341 -26.76048 -25.73401 -25.37590 -23.94398 -23.59928 -22.42254 -21.85445 -21.30847 -20.03726 -19.61617 -18.74520 -18.44173 -17.56397 -16.83258 -16.64520 -16.53106 -16.33180 -16.31872 -16.00277 -15.53397 -15.45879 -15.21174 -14.86125 -14.79297 -14.38816 -14.14282 -13.94191 -13.69765 -13.50809 -13.22567 -13.13950 -12.92330 -12.74851 -12.48760 -12.35041 -12.29868 -12.07481 -11.88832 -11.50456 -11.39105 -11.14928 -11.06955 -11.03278 -10.75342 -10.53675 -10.08533 -9.87255 -9.02528 -8.96336 -7.95912 -5.22403 -0.43237 0.49817 0.92858 1.46921 1.47187 1.55362 1.68396 1.95309 2.16124 2.55547 2.93966 3.35078 3.43166 3.49460 3.55396 3.58437 3.68197 3.73502 3.89048 3.93834 3.98379 4.07565 4.09409 4.22616 4.26811 4.50056 4.53372 4.61069 4.70851 4.72179 4.72705 4.81986 4.89107 4.97113 4.98829 5.07427 5.10485 5.17642 5.20120 5.27513 5.43637 5.47607 5.50169 5.59244 5.64888 5.79530 6.20066 6.26947 6.40018 6.95972 7.10849 7.34674 8.10197 8.34530 9.26962 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.002293 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.598023 B =12208.722591 C =12435.184808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.240 4.240 8 H 0.074 0.926 9 N -0.715 5.715 10 C 0.174 3.826 11 H 0.077 0.923 12 C -0.169 4.169 13 C 0.150 3.850 14 H 0.113 0.887 15 N -0.695 5.695 16 C 0.585 3.415 17 O -0.557 6.557 18 C 0.007 3.993 19 C -0.091 4.091 20 C -0.193 4.193 21 C 0.173 3.827 22 N -0.529 5.529 23 C 0.098 3.902 24 C -0.180 4.180 25 C 0.133 3.867 26 N -0.559 5.559 27 H 0.432 0.568 28 C -0.111 4.111 29 C -0.111 4.111 30 C -0.130 4.130 31 C -0.116 4.116 32 H 0.250 0.750 33 H 0.379 0.621 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.406 0.594 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.183 0.817 40 H 0.160 0.840 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.061 0.939 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.055 -22.636 2.725 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.796 3.204 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.372 4.372 8 H 0.092 0.908 9 N -0.353 5.353 10 C 0.063 3.937 11 H 0.095 0.905 12 C -0.211 4.211 13 C 0.045 3.955 14 H 0.131 0.869 15 N -0.345 5.345 16 C 0.372 3.628 17 O -0.435 6.435 18 C -0.102 4.102 19 C -0.119 4.119 20 C -0.200 4.200 21 C 0.006 3.994 22 N -0.239 5.239 23 C -0.049 4.049 24 C -0.202 4.202 25 C 0.014 3.986 26 N -0.164 5.164 27 H 0.273 0.727 28 C -0.113 4.113 29 C -0.149 4.149 30 C -0.168 4.168 31 C -0.154 4.154 32 H 0.059 0.941 33 H 0.213 0.787 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.243 0.757 37 H 0.185 0.815 38 H 0.199 0.801 39 H 0.200 0.800 40 H 0.178 0.822 41 H 0.122 0.878 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.100 0.900 45 H 0.080 0.920 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.394 -23.212 3.089 24.030 hybrid contribution -0.279 2.761 -0.538 2.827 sum -5.673 -20.451 2.552 21.376 Atomic orbital electron populations 1.69785 1.06348 1.25913 1.59594 1.25443 0.96311 1.00695 1.03920 0.85246 0.77757 0.80090 0.77319 1.21560 1.22437 1.19762 1.19649 0.91445 0.85367 1.40767 0.90844 1.42420 1.05543 1.00246 1.87109 1.21312 0.94935 0.83789 0.93628 0.90459 1.24132 1.01374 0.96314 0.99327 1.22041 0.92809 0.86917 0.93748 0.86893 1.45712 1.10889 1.20255 1.57653 1.17343 0.87124 0.80654 0.77633 1.90836 1.17225 1.76045 1.59432 1.20092 0.82537 0.98983 1.08622 1.21062 0.98770 0.93168 0.98903 1.19377 0.93552 0.99164 1.07907 1.22890 0.93712 0.92329 0.90478 1.67729 1.00701 1.33816 1.21643 1.22617 0.99550 0.89533 0.93182 1.21118 0.93434 1.00609 1.05056 1.18670 0.95085 0.88535 0.96293 1.41781 1.04622 1.20275 1.49767 0.72696 1.23392 0.97712 0.95851 0.94351 1.22467 0.93705 1.01644 0.97037 1.22635 0.97788 0.99893 0.96437 1.22712 0.97966 1.00550 0.94149 0.94100 0.78691 0.91125 0.92288 0.75687 0.81524 0.80128 0.79972 0.82195 0.87775 0.92810 0.92650 0.90022 0.91994 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.84 13.06 21.65 0.28 -56.56 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.24 -12.80 9.97 84.03 0.84 -11.96 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 N -0.71 -33.47 5.33 -321.56 -1.71 -35.18 16 10 C 0.17 6.39 4.36 45.28 0.20 6.58 16 11 H 0.08 2.90 8.10 -2.38 -0.02 2.88 16 12 C -0.17 -5.56 7.69 31.23 0.24 -5.32 16 13 C 0.15 4.01 4.12 45.29 0.19 4.20 16 14 H 0.11 3.18 7.46 -2.39 -0.02 3.16 16 15 N -0.70 -15.22 5.25 -444.76 -2.33 -17.55 16 16 C 0.59 14.37 7.80 86.56 0.68 15.05 16 17 O -0.56 -17.61 16.44 -4.16 -0.07 -17.68 16 18 C 0.01 0.14 6.97 39.90 0.28 0.42 16 19 C -0.09 -1.80 10.53 22.52 0.24 -1.56 16 20 C -0.19 -3.58 6.21 -21.37 -0.13 -3.72 16 21 C 0.17 2.92 11.29 85.12 0.96 3.88 16 22 N -0.53 -9.60 10.33 -195.61 -2.02 -11.62 16 23 C 0.10 1.38 11.09 84.24 0.93 2.32 16 24 C -0.18 -2.36 10.09 22.19 0.22 -2.13 16 25 C 0.13 2.24 7.32 39.38 0.29 2.53 16 26 N -0.56 -8.56 6.05 -177.04 -1.07 -9.63 16 27 H 0.43 4.30 8.12 -92.71 -0.75 3.55 16 28 C -0.11 -3.10 1.06 -52.31 -0.06 -3.15 16 29 C -0.11 -2.87 6.77 30.88 0.21 -2.67 16 30 C -0.13 -3.53 8.08 31.23 0.25 -3.27 16 31 C -0.12 -2.93 7.84 30.89 0.24 -2.68 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.38 18.78 5.92 -92.71 -0.55 18.23 16 34 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.41 6.92 6.09 -92.70 -0.56 6.35 16 37 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.10 1.91 7.03 -2.39 -0.02 1.89 16 42 H 0.05 1.72 6.42 -2.38 -0.02 1.71 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -69.33 380.39 0.33 -69.00 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.82 Total: 36.95 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 6.04 Total: -4.98 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -6.86 Total: -130.54 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.07 Total: -17.68 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.33 0.33 -69.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.846 kcal (2) G-P(sol) polarization free energy of solvation -69.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds