Wall clock time and date at job start Sat Apr 11 2020 06:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47209 * 269.99842 * 3 2 1 5 5 H 1.48504 * 109.47270 * 29.99717 * 3 2 1 6 6 H 1.48500 * 109.47207 * 149.99962 * 3 2 1 7 7 C 1.38806 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00048 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00210 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00185 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.88728 * 26.83348 * 10 9 7 12 12 C 1.53957 * 113.66214 * 255.49516 * 10 9 7 13 13 C 1.53954 * 87.29120 * 220.69724 * 12 10 9 14 14 H 1.09003 * 113.66203 * 270.16373 * 13 12 10 15 15 N 1.46504 * 113.66019 * 139.20356 * 13 12 10 16 16 C 1.34772 * 120.00007 * 104.50532 * 15 13 12 17 17 O 1.21622 * 120.00162 * 359.97438 * 16 15 13 18 18 C 1.47374 * 120.00367 * 180.02562 * 16 15 13 19 19 C 1.39258 * 120.83313 * 359.92670 * 18 16 15 20 20 N 1.31910 * 120.97115 * 180.02562 * 19 18 16 21 21 C 1.31924 * 122.71696 * 0.02562 * 20 19 18 22 22 C 1.38691 * 120.79745 * 0.02562 * 21 20 19 23 23 N 1.37743 * 134.30651 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.55781 * 0.02562 * 23 22 21 25 25 C 1.36555 * 108.88462 * 180.02562 * 23 22 21 26 26 C 1.34645 * 109.65733 * 0.02562 * 25 23 22 27 27 C 1.40993 * 118.83872 * 359.97438 * 22 21 20 28 28 C 1.52904 * 86.78632 * 24.73065 * 13 12 10 29 29 C 1.52901 * 121.14445 * 209.37646 * 28 13 12 30 30 C 1.53950 * 86.78764 * 209.37541 * 29 28 13 31 31 C 1.52921 * 121.13981 * 100.81281 * 28 13 12 32 32 H 0.97001 * 120.00119 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00165 * 359.97438 * 9 7 2 34 34 H 1.08990 * 113.58326 * 106.09138 * 12 10 9 35 35 H 1.09001 * 113.64389 * 335.30893 * 12 10 9 36 36 H 0.96997 * 119.99996 * 284.49889 * 15 13 12 37 37 H 1.08003 * 119.51656 * 0.05167 * 19 18 16 38 38 H 1.08001 * 119.60027 * 180.02562 * 21 20 19 39 39 H 1.08003 * 125.17605 * 180.02562 * 25 23 22 40 40 H 1.08001 * 126.09301 * 179.97438 * 26 25 23 41 41 H 1.08995 * 113.66371 * 323.85224 * 29 28 13 42 42 H 1.09008 * 113.65974 * 94.90248 * 29 28 13 43 43 H 1.08994 * 113.58414 * 270.13780 * 30 29 28 44 44 H 1.09005 * 113.65056 * 139.34825 * 30 29 28 45 45 H 1.08997 * 113.65978 * 265.10213 * 31 28 13 46 46 H 1.09001 * 113.65674 * 36.15390 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1121 -2.4707 0.0011 11 1 3.5483 -3.2858 -0.4526 12 6 4.7264 -2.8295 1.3664 13 6 5.9709 -3.3104 0.5981 14 1 5.9302 -4.3618 0.3136 15 7 7.2360 -2.9420 1.2386 16 6 7.9516 -3.8721 1.9013 17 8 7.5470 -5.0171 1.9681 18 6 9.2240 -3.5015 2.5461 19 6 9.7038 -2.1959 2.4802 20 7 10.8426 -1.8613 3.0559 21 6 11.5873 -2.7253 3.7187 22 6 11.1981 -4.0508 3.8415 23 7 11.7410 -5.1604 4.4508 24 1 12.5762 -5.1814 4.9437 25 6 10.9118 -6.2263 4.2479 26 6 9.8455 -5.8389 3.5228 27 6 9.9888 -4.4626 3.2450 28 6 5.5461 -2.3539 -0.5167 29 6 5.8848 -2.6440 -1.9792 30 6 5.9006 -1.1188 -2.1879 31 6 6.2166 -0.9901 -0.6867 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3620 0.0007 34 1 4.1984 -3.6293 1.8855 35 1 4.9139 -1.9643 2.0023 36 1 7.5586 -2.0288 1.1855 37 1 9.1351 -1.4461 1.9502 38 1 12.5112 -2.3964 4.1711 39 1 11.0849 -7.2277 4.6134 40 1 9.0259 -6.4689 3.2100 41 1 6.8581 -3.1146 -2.1179 42 1 5.0864 -3.1514 -2.5208 43 1 4.9308 -0.7066 -2.4662 44 1 6.7078 -0.7742 -2.8344 45 1 5.6833 -0.1762 -0.1956 46 1 7.2832 -0.9960 -0.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078670829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:26 Heat of formation + Delta-G solvation = 102.683359 kcal Electronic energy + Delta-G solvation = -29162.639516 eV Core-core repulsion = 25247.898518 eV Total energy + Delta-G solvation = -3914.740998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.12008 -40.69432 -39.09057 -38.09864 -34.98511 -34.24608 -33.02803 -32.36763 -30.63397 -30.28401 -29.73485 -25.65278 -25.43022 -24.25087 -24.16718 -22.93559 -22.15590 -21.17062 -20.62971 -20.50055 -18.90744 -18.33676 -17.67354 -17.05073 -16.91885 -16.27745 -15.46017 -15.43448 -15.14180 -15.07679 -14.80437 -14.57216 -14.48384 -13.92640 -13.54823 -13.13805 -13.03198 -12.79128 -12.69579 -12.57977 -12.32256 -12.21524 -11.97393 -11.78640 -11.52883 -11.06109 -10.89431 -10.81908 -10.47490 -10.43901 -10.27775 -9.99035 -9.94359 -9.85073 -9.56389 -9.47768 -9.01370 -8.89066 -8.75520 -8.27948 -7.27122 -5.78758 -3.14262 0.18682 1.08440 2.35757 2.57866 2.83405 3.16447 3.34814 3.36958 3.43704 3.73255 4.05485 4.33330 4.42046 4.53743 4.56509 4.66308 4.76633 4.79565 4.87711 4.93053 5.01945 5.09265 5.13972 5.32861 5.37823 5.49635 5.51754 5.67519 5.79979 5.84638 5.86120 5.87038 5.95092 6.07594 6.14331 6.18448 6.26252 6.29187 6.30507 6.48103 6.53670 6.55391 6.69526 6.79415 6.96115 6.96598 7.56778 7.62735 7.98330 8.24915 8.40998 9.18616 9.90810 10.10619 11.39499 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.002635 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.513642 B =10624.687351 C =10835.692419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.731 5.731 10 C 0.200 3.800 11 H 0.089 0.911 12 C -0.173 4.173 13 C 0.134 3.866 14 H 0.113 0.887 15 N -0.707 5.707 16 C 0.563 3.437 17 O -0.533 6.533 18 C -0.139 4.139 19 C 0.097 3.903 20 N -0.473 5.473 21 C 0.136 3.864 22 C 0.018 3.982 23 N -0.578 5.578 24 H 0.422 0.578 25 C 0.066 3.934 26 C -0.190 4.190 27 C -0.021 4.021 28 C -0.122 4.122 29 C -0.124 4.124 30 C -0.133 4.133 31 C -0.121 4.121 32 H 0.260 0.740 33 H 0.363 0.637 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.397 0.603 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.560 -9.455 6.228 29.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.110 0.890 9 N -0.372 5.372 10 C 0.087 3.913 11 H 0.107 0.893 12 C -0.216 4.216 13 C 0.029 3.971 14 H 0.131 0.869 15 N -0.357 5.357 16 C 0.349 3.651 17 O -0.411 6.411 18 C -0.145 4.145 19 C -0.055 4.055 20 N -0.181 5.181 21 C -0.030 4.030 22 C -0.092 4.092 23 N -0.181 5.181 24 H 0.260 0.740 25 C -0.064 4.064 26 C -0.214 4.214 27 C -0.033 4.033 28 C -0.124 4.124 29 C -0.161 4.161 30 C -0.171 4.171 31 C -0.159 4.159 32 H 0.070 0.930 33 H 0.198 0.802 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.233 0.767 37 H 0.175 0.825 38 H 0.174 0.826 39 H 0.196 0.804 40 H 0.178 0.822 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 27.287 -9.436 6.213 29.533 hybrid contribution 0.845 0.848 0.441 1.276 sum 28.132 -8.588 6.654 30.157 Atomic orbital electron populations 1.69693 1.05092 1.25821 1.57329 1.24666 0.95206 0.97116 1.01980 0.86623 0.79259 0.85238 0.77836 1.20962 1.21703 1.20360 1.19122 0.80552 0.94794 1.43056 0.89033 1.42685 1.03940 1.01842 1.88715 1.21036 0.87648 0.90211 0.92359 0.89279 1.24249 0.95892 1.01121 1.00291 1.22293 0.81543 0.99446 0.93807 0.86886 1.45910 1.23301 1.12343 1.54185 1.17895 0.83247 0.85375 0.78575 1.90748 1.70720 1.19462 1.60167 1.20483 0.96931 0.94357 1.02742 1.22638 0.92530 0.93511 0.96802 1.67583 1.06068 1.35388 1.09040 1.21922 0.99061 0.85826 0.96185 1.19353 0.96658 0.90854 1.02319 1.41764 1.22146 1.06971 1.47179 0.74047 1.22236 0.91254 0.92555 1.00337 1.20931 1.01128 0.94147 1.05236 1.18186 0.93184 0.94575 0.97368 1.23594 0.99248 0.95777 0.93795 1.22693 1.01173 0.96578 0.95687 1.22762 1.02131 0.96601 0.95595 1.22493 0.99231 0.96627 0.97547 0.93029 0.80223 0.91592 0.90228 0.76709 0.82520 0.82593 0.80381 0.82172 0.90698 0.91070 0.89361 0.92117 0.90999 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.98 13.97 55.49 0.78 -28.21 16 2 C 0.01 0.18 5.50 -17.44 -0.10 0.08 16 3 Si 0.88 21.72 27.74 -169.99 -4.71 17.01 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 7 C -0.25 -6.74 10.46 -15.06 -0.16 -6.90 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 9 N -0.73 -16.53 5.16 -52.99 -0.27 -16.81 16 10 C 0.20 3.69 4.35 -67.48 -0.29 3.40 16 11 H 0.09 1.69 8.12 -51.93 -0.42 1.27 16 12 C -0.17 -2.96 7.68 -25.74 -0.20 -3.16 16 13 C 0.13 1.96 4.08 -67.48 -0.28 1.68 16 14 H 0.11 1.73 7.54 -51.93 -0.39 1.34 16 15 N -0.71 -9.20 5.25 -54.46 -0.29 -9.48 16 16 C 0.56 8.09 7.77 -12.54 -0.10 7.99 16 17 O -0.53 -9.14 14.86 5.26 0.08 -9.06 16 18 C -0.14 -1.76 5.91 -104.63 -0.62 -2.38 16 19 C 0.10 1.09 10.71 -17.14 -0.18 0.90 16 20 N -0.47 -5.19 10.30 -12.85 -0.13 -5.33 16 21 C 0.14 1.21 11.21 -17.34 -0.19 1.01 16 22 C 0.02 0.17 7.31 -84.00 -0.61 -0.45 16 23 N -0.58 -3.43 6.13 -10.63 -0.07 -3.49 16 24 H 0.42 0.92 8.96 -40.82 -0.37 0.55 16 25 C 0.07 0.44 11.84 -16.72 -0.20 0.24 16 26 C -0.19 -2.01 10.09 -39.76 -0.40 -2.42 16 27 C -0.02 -0.25 6.04 -106.58 -0.64 -0.90 16 28 C -0.12 -1.80 1.06 -154.71 -0.16 -1.97 16 29 C -0.12 -1.67 7.84 -26.29 -0.21 -1.87 16 30 C -0.13 -1.84 8.08 -25.75 -0.21 -2.05 16 31 C -0.12 -1.66 6.77 -26.28 -0.18 -1.84 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.36 8.06 3.73 -40.82 -0.15 7.90 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.40 4.38 5.00 -40.82 -0.20 4.17 16 37 H 0.16 1.42 6.42 -52.48 -0.34 1.08 16 38 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 39 H 0.18 0.48 8.06 -52.48 -0.42 0.05 16 40 H 0.16 1.86 7.19 -52.49 -0.38 1.48 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 43 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.11 6.43 -51.93 -0.33 0.78 16 46 H 0.07 0.84 6.96 -51.93 -0.36 0.48 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -34.97 372.53 -9.65 -44.62 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.92 Total: 13.77 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -4.73 Total: -8.63 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.02 Total: -63.32 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.97 -9.65 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078670829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.301 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds