Wall clock time and date at job start Sat Apr 11 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47209 * 269.99842 * 3 2 1 5 5 H 1.48504 * 109.47270 * 29.99717 * 3 2 1 6 6 H 1.48500 * 109.47207 * 149.99962 * 3 2 1 7 7 C 1.38806 * 120.00328 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00048 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00210 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00185 * 180.02562 * 9 7 2 11 11 H 1.09004 * 112.88728 * 26.83348 * 10 9 7 12 12 C 1.53957 * 113.66214 * 255.49516 * 10 9 7 13 13 C 1.53954 * 87.29120 * 220.69724 * 12 10 9 14 14 H 1.09003 * 113.66203 * 270.16373 * 13 12 10 15 15 N 1.46504 * 113.66019 * 139.20356 * 13 12 10 16 16 C 1.34772 * 120.00007 * 104.50532 * 15 13 12 17 17 O 1.21622 * 120.00162 * 359.97438 * 16 15 13 18 18 C 1.47374 * 120.00367 * 180.02562 * 16 15 13 19 19 C 1.39258 * 120.83313 * 359.92670 * 18 16 15 20 20 N 1.31910 * 120.97115 * 180.02562 * 19 18 16 21 21 C 1.31924 * 122.71696 * 0.02562 * 20 19 18 22 22 C 1.38691 * 120.79745 * 0.02562 * 21 20 19 23 23 N 1.37743 * 134.30651 * 179.97438 * 22 21 20 24 24 H 0.97001 * 125.55781 * 0.02562 * 23 22 21 25 25 C 1.36555 * 108.88462 * 180.02562 * 23 22 21 26 26 C 1.34645 * 109.65733 * 0.02562 * 25 23 22 27 27 C 1.40993 * 118.83872 * 359.97438 * 22 21 20 28 28 C 1.52904 * 86.78632 * 24.73065 * 13 12 10 29 29 C 1.52901 * 121.14445 * 209.37646 * 28 13 12 30 30 C 1.53950 * 86.78764 * 209.37541 * 29 28 13 31 31 C 1.52921 * 121.13981 * 100.81281 * 28 13 12 32 32 H 0.97001 * 120.00119 * 0.02562 * 1 2 3 33 33 H 0.97001 * 120.00165 * 359.97438 * 9 7 2 34 34 H 1.08990 * 113.58326 * 106.09138 * 12 10 9 35 35 H 1.09001 * 113.64389 * 335.30893 * 12 10 9 36 36 H 0.96997 * 119.99996 * 284.49889 * 15 13 12 37 37 H 1.08003 * 119.51656 * 0.05167 * 19 18 16 38 38 H 1.08001 * 119.60027 * 180.02562 * 21 20 19 39 39 H 1.08003 * 125.17605 * 180.02562 * 25 23 22 40 40 H 1.08001 * 126.09301 * 179.97438 * 26 25 23 41 41 H 1.08995 * 113.66371 * 323.85224 * 29 28 13 42 42 H 1.09008 * 113.65974 * 94.90248 * 29 28 13 43 43 H 1.08994 * 113.58414 * 270.13780 * 30 29 28 44 44 H 1.09005 * 113.65056 * 139.34825 * 30 29 28 45 45 H 1.08997 * 113.65978 * 265.10213 * 31 28 13 46 46 H 1.09001 * 113.65674 * 36.15390 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2020 0.0011 10 6 4.1121 -2.4707 0.0011 11 1 3.5483 -3.2858 -0.4526 12 6 4.7264 -2.8295 1.3664 13 6 5.9709 -3.3104 0.5981 14 1 5.9302 -4.3618 0.3136 15 7 7.2360 -2.9420 1.2386 16 6 7.9516 -3.8721 1.9013 17 8 7.5470 -5.0171 1.9681 18 6 9.2240 -3.5015 2.5461 19 6 9.7038 -2.1959 2.4802 20 7 10.8426 -1.8613 3.0559 21 6 11.5873 -2.7253 3.7187 22 6 11.1981 -4.0508 3.8415 23 7 11.7410 -5.1604 4.4508 24 1 12.5762 -5.1814 4.9437 25 6 10.9118 -6.2263 4.2479 26 6 9.8455 -5.8389 3.5228 27 6 9.9888 -4.4626 3.2450 28 6 5.5461 -2.3539 -0.5167 29 6 5.8848 -2.6440 -1.9792 30 6 5.9006 -1.1188 -2.1879 31 6 6.2166 -0.9901 -0.6867 32 1 -0.4850 0.8400 -0.0004 33 1 3.8646 -0.3620 0.0007 34 1 4.1984 -3.6293 1.8855 35 1 4.9139 -1.9643 2.0023 36 1 7.5586 -2.0288 1.1855 37 1 9.1351 -1.4461 1.9502 38 1 12.5112 -2.3964 4.1711 39 1 11.0849 -7.2277 4.6134 40 1 9.0259 -6.4689 3.2100 41 1 6.8581 -3.1146 -2.1179 42 1 5.0864 -3.1514 -2.5208 43 1 4.9308 -0.7066 -2.4662 44 1 6.7078 -0.7742 -2.8344 45 1 5.6833 -0.1762 -0.1956 46 1 7.2832 -0.9960 -0.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078670829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:24 Heat of formation + Delta-G solvation = 77.974477 kcal Electronic energy + Delta-G solvation = -29163.710973 eV Core-core repulsion = 25247.898518 eV Total energy + Delta-G solvation = -3915.812455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.80697 -41.93713 -40.12878 -38.90212 -36.36677 -35.81073 -34.26459 -33.51784 -32.39003 -31.00107 -30.58535 -26.84192 -26.69935 -25.65020 -25.34478 -23.75778 -23.46044 -22.09493 -21.79389 -21.59898 -20.21231 -19.67347 -18.67060 -18.29032 -17.75021 -17.50937 -16.59516 -16.47909 -16.29412 -16.14638 -15.83825 -15.70163 -15.50013 -15.40453 -14.69680 -14.53365 -14.21702 -13.90184 -13.79953 -13.65047 -13.49635 -13.40924 -13.17693 -13.01776 -12.96677 -12.78159 -12.39656 -12.18859 -12.05379 -11.85717 -11.48529 -11.33552 -11.21149 -11.13614 -11.07590 -10.78562 -10.48457 -9.95285 -9.66505 -9.26096 -8.99084 -8.01598 -5.34378 -0.57558 0.36929 1.36235 1.40312 1.47048 1.63674 1.90608 2.03733 2.11944 2.48226 2.90423 3.27360 3.33751 3.43286 3.48898 3.64854 3.71066 3.78116 3.81770 3.88645 3.90662 4.00622 4.09938 4.15078 4.20484 4.43729 4.52451 4.59359 4.65771 4.70914 4.75926 4.79955 4.84510 4.98129 5.08314 5.10157 5.16062 5.18225 5.28558 5.38358 5.44467 5.56320 5.58963 5.62785 5.79354 5.81953 6.23260 6.52777 6.56960 6.88782 7.08567 7.19366 7.84471 8.05210 9.20132 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.002635 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.513642 B =10624.687351 C =10835.692419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.251 1.251 7 C -0.230 4.230 8 H 0.056 0.944 9 N -0.731 5.731 10 C 0.181 3.819 11 H 0.075 0.925 12 C -0.171 4.171 13 C 0.152 3.848 14 H 0.106 0.894 15 N -0.696 5.696 16 C 0.563 3.437 17 O -0.571 6.571 18 C -0.172 4.172 19 C 0.103 3.897 20 N -0.496 5.496 21 C 0.151 3.849 22 C 0.008 3.992 23 N -0.555 5.555 24 H 0.443 0.557 25 C 0.108 3.892 26 C -0.243 4.243 27 C -0.049 4.049 28 C -0.112 4.112 29 C -0.117 4.117 30 C -0.133 4.133 31 C -0.117 4.117 32 H 0.257 0.743 33 H 0.369 0.631 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.172 0.828 38 H 0.196 0.804 39 H 0.224 0.776 40 H 0.137 0.863 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.713 -8.898 7.080 34.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.175 1.175 7 C -0.361 4.361 8 H 0.074 0.926 9 N -0.373 5.373 10 C 0.071 3.929 11 H 0.093 0.907 12 C -0.213 4.213 13 C 0.046 3.954 14 H 0.124 0.876 15 N -0.348 5.348 16 C 0.351 3.649 17 O -0.451 6.451 18 C -0.178 4.178 19 C -0.048 4.048 20 N -0.205 5.205 21 C -0.015 4.015 22 C -0.102 4.102 23 N -0.159 5.159 24 H 0.286 0.714 25 C -0.025 4.025 26 C -0.267 4.267 27 C -0.061 4.061 28 C -0.114 4.114 29 C -0.155 4.155 30 C -0.170 4.170 31 C -0.154 4.154 32 H 0.066 0.934 33 H 0.204 0.796 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.189 0.811 38 H 0.212 0.788 39 H 0.241 0.759 40 H 0.155 0.845 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 32.544 -8.882 7.078 34.469 hybrid contribution -0.678 0.459 0.275 0.863 sum 31.867 -8.423 7.353 33.771 Atomic orbital electron populations 1.69883 1.07167 1.26589 1.59851 1.25474 0.96061 1.01141 1.02812 0.85498 0.78736 0.79826 0.78300 1.20056 1.22491 1.17518 1.19072 0.82722 0.93391 1.40894 0.92628 1.42581 1.02174 1.03580 1.88999 1.21247 0.89413 0.88306 0.93980 0.90669 1.24132 0.97219 1.00660 0.99306 1.21913 0.81443 0.99042 0.92969 0.87597 1.45723 1.22367 1.12867 1.53798 1.18256 0.83784 0.84845 0.77997 1.90725 1.71775 1.21010 1.61586 1.20366 0.96777 0.95578 1.05105 1.22852 0.92673 0.93088 0.96217 1.67677 1.06386 1.36058 1.10349 1.22560 0.99428 0.85331 0.94142 1.19405 0.96110 0.91851 1.02856 1.41795 1.22504 1.05724 1.45860 0.71406 1.22796 0.89009 0.93950 0.96716 1.20925 1.02909 0.94085 1.08814 1.18566 0.94439 0.95233 0.97828 1.23355 0.95943 0.97182 0.94936 1.22717 1.02060 0.96797 0.93890 1.22715 1.01750 0.96412 0.96140 1.22595 1.00923 0.94669 0.97255 0.93412 0.79597 0.92810 0.90574 0.75302 0.81061 0.78763 0.75936 0.84478 0.88342 0.91945 0.92010 0.89380 0.92435 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.66 13.97 21.65 0.30 -63.35 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.95 45.30 27.74 68.60 1.90 47.20 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.25 -10.70 6.52 99.48 0.65 -10.06 16 7 C -0.23 -13.10 10.46 84.03 0.88 -12.22 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 N -0.73 -33.53 5.16 -321.55 -1.66 -35.19 16 10 C 0.18 6.85 4.35 45.28 0.20 7.04 16 11 H 0.08 3.03 8.12 -2.39 -0.02 3.01 16 12 C -0.17 -5.98 7.68 31.23 0.24 -5.74 16 13 C 0.15 4.42 4.08 45.28 0.18 4.60 16 14 H 0.11 3.30 7.54 -2.39 -0.02 3.28 16 15 N -0.70 -17.51 5.25 -444.45 -2.33 -19.84 16 16 C 0.56 16.29 7.77 86.65 0.67 16.96 16 17 O -0.57 -20.34 14.86 -4.10 -0.06 -20.40 16 18 C -0.17 -4.29 5.91 -19.87 -0.12 -4.40 16 19 C 0.10 2.14 10.71 84.93 0.91 3.05 16 20 N -0.50 -9.67 10.30 -194.55 -2.00 -11.67 16 21 C 0.15 2.18 11.21 84.79 0.95 3.13 16 22 C 0.01 0.13 7.31 39.00 0.29 0.42 16 23 N -0.55 -4.43 6.13 -187.56 -1.15 -5.58 16 24 H 0.44 -0.25 8.96 -92.71 -0.83 -1.09 16 25 C 0.11 1.08 11.84 83.13 0.98 2.07 16 26 C -0.24 -5.05 10.09 22.16 0.22 -4.82 16 27 C -0.05 -1.13 6.04 -21.14 -0.13 -1.26 16 28 C -0.11 -3.21 1.06 -52.31 -0.06 -3.26 16 29 C -0.12 -2.95 7.84 30.88 0.24 -2.71 16 30 C -0.13 -3.35 8.08 31.23 0.25 -3.10 16 31 C -0.12 -2.90 6.77 30.89 0.21 -2.69 16 32 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.37 16.06 3.73 -92.71 -0.35 15.72 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.41 8.19 5.00 -92.71 -0.46 7.72 16 37 H 0.17 2.74 6.42 -2.91 -0.02 2.72 16 38 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.22 0.12 8.06 -2.91 -0.02 0.10 16 40 H 0.14 3.42 7.19 -2.91 -0.02 3.39 16 41 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.06 1.63 6.43 -2.39 -0.02 1.62 16 46 H 0.11 2.00 6.96 -2.39 -0.02 1.98 16 Total: -1.00 -81.54 372.53 0.75 -80.79 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: -0.64 Total: 34.30 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 6.40 Total: -6.25 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -6.84 Total: -135.64 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -81.54 0.75 -80.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078670829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.766 kcal (2) G-P(sol) polarization free energy of solvation -81.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds