Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46848 * 269.99797 * 3 2 1 5 5 H 1.48504 * 109.47125 * 29.99727 * 3 2 1 6 6 H 1.48494 * 109.47015 * 149.99963 * 3 2 1 7 7 C 1.38805 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00673 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.88082 * 26.84287 * 10 9 7 12 12 C 1.53948 * 113.66558 * 255.50101 * 10 9 7 13 13 C 1.53949 * 87.29624 * 220.69633 * 12 10 9 14 14 H 1.08994 * 113.66438 * 270.17344 * 13 12 10 15 15 N 1.46499 * 113.66606 * 139.20361 * 13 12 10 16 16 C 1.34776 * 119.99688 * 104.50257 * 15 13 12 17 17 O 1.21629 * 120.00396 * 0.02562 * 16 15 13 18 18 C 1.47309 * 119.99547 * 180.02562 * 16 15 13 19 19 C 1.46609 * 120.61987 * 0.02828 * 18 16 15 20 20 C 1.34229 * 119.81585 * 179.97438 * 19 18 16 21 21 N 1.37387 * 120.95479 * 359.97438 * 20 19 18 22 22 C 1.34890 * 132.31117 * 180.02562 * 21 20 19 23 23 N 1.30999 * 109.50736 * 179.97438 * 22 21 20 24 24 C 1.33130 * 109.92925 * 359.77325 * 23 22 21 25 25 C 1.38200 * 120.82683 * 0.02562 * 21 20 19 26 26 C 1.38578 * 120.61201 * 180.02562 * 18 16 15 27 27 C 1.52906 * 113.74952 * 158.26943 * 10 9 7 28 28 C 1.52910 * 121.13599 * 265.11281 * 27 10 9 29 29 C 1.53947 * 86.78264 * 100.81274 * 28 27 10 30 30 C 1.52910 * 121.13358 * 13.66370 * 27 10 9 31 31 H 0.96996 * 120.00298 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99390 * 0.02562 * 9 7 2 33 33 H 1.09005 * 113.57785 * 106.09869 * 12 10 9 34 34 H 1.09000 * 113.65017 * 335.31115 * 12 10 9 35 35 H 0.96999 * 119.99830 * 284.51478 * 15 13 12 36 36 H 1.08007 * 120.08874 * 359.97438 * 19 18 16 37 37 H 1.08001 * 119.52220 * 180.02562 * 20 19 18 38 38 H 1.07998 * 125.24887 * 359.96396 * 22 21 20 39 39 H 1.07994 * 126.30984 * 180.26430 * 24 23 22 40 40 H 1.08001 * 120.49397 * 0.02562 * 26 18 16 41 41 H 1.09002 * 113.66300 * 215.28327 * 28 27 10 42 42 H 1.09005 * 113.66366 * 346.33737 * 28 27 10 43 43 H 1.09002 * 113.58133 * 270.13110 * 29 28 27 44 44 H 1.08999 * 113.65451 * 139.35348 * 29 28 27 45 45 H 1.09000 * 113.65807 * 13.66140 * 30 27 10 46 46 H 1.08999 * 113.66129 * 144.71483 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 3.0464 -3.5755 0.4543 12 6 2.0604 -4.3690 -1.3632 13 6 1.8555 -5.6867 -0.5939 14 1 2.7867 -6.1768 -0.3100 15 7 0.9034 -6.5986 -1.2327 16 6 1.3505 -7.6838 -1.8953 17 8 2.5444 -7.9062 -1.9625 18 6 0.3932 -8.6004 -2.5381 19 6 -1.0487 -8.3451 -2.4661 20 6 -1.9066 -9.1907 -3.0582 21 7 -1.4543 -10.2976 -3.7348 22 6 -2.0957 -11.2797 -4.4008 23 7 -1.2195 -12.1247 -4.8847 24 6 0.0123 -11.7341 -4.5647 25 6 -0.1023 -10.5700 -3.8233 26 6 0.8389 -9.7202 -3.2222 27 6 1.2405 -4.8398 0.5209 28 6 1.3240 -5.2772 1.9838 29 6 -0.0047 -4.5283 2.1931 30 6 -0.2755 -4.7386 0.6924 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0016 33 1 3.0167 -4.3120 -1.8833 34 1 1.2167 -4.0993 -1.9985 35 1 -0.0487 -6.4213 -1.1790 36 1 -1.4195 -7.4789 -1.9382 37 1 -2.9678 -8.9978 -3.0026 38 1 -3.1666 -11.3575 -4.5171 39 1 0.9315 -12.2340 -4.8321 40 1 1.8949 -9.9353 -3.2923 41 1 1.2451 -6.3554 2.1232 42 1 2.1631 -4.8390 2.5243 43 1 0.1235 -3.4821 2.4707 44 1 -0.7059 -5.0546 2.8408 45 1 -0.7143 -3.8701 0.2012 46 1 -0.8039 -5.6654 0.4689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078671253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = 115.793690 kcal Electronic energy + Delta-G solvation = -28781.334964 eV Core-core repulsion = 24867.162473 eV Total energy + Delta-G solvation = -3914.172491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -43.07872 -40.70852 -39.21467 -37.12960 -34.95618 -34.22193 -33.64134 -32.59257 -31.14542 -29.91005 -28.64723 -25.58574 -25.39689 -24.22723 -24.03016 -23.53073 -22.30067 -21.94021 -20.58406 -20.44397 -18.41574 -18.21520 -17.77559 -17.01154 -16.61531 -16.20615 -16.07555 -15.43089 -15.15995 -14.99658 -14.78046 -14.68766 -14.52260 -14.07995 -13.90068 -13.41060 -13.08196 -12.82946 -12.59879 -12.24368 -12.15383 -12.11011 -11.89671 -11.57758 -11.28688 -10.99802 -10.96767 -10.85616 -10.76311 -10.69291 -10.25616 -10.13601 -10.09535 -9.92940 -9.73837 -9.70488 -9.50573 -8.90384 -8.75962 -7.93024 -7.02489 -5.84986 -3.13333 0.18286 0.71814 2.19117 2.44206 2.70565 3.09866 3.36294 3.39341 3.45418 3.46159 3.95547 4.19787 4.21402 4.37886 4.53084 4.54342 4.61278 4.71824 4.86544 4.98147 5.04395 5.13751 5.17533 5.22722 5.26259 5.39836 5.52105 5.61696 5.67576 5.81809 5.84656 5.91486 5.93291 6.00420 6.04050 6.13700 6.16143 6.26898 6.33509 6.44494 6.51352 6.55627 6.73153 6.78852 6.85727 7.00858 7.44969 7.52081 7.65307 8.15856 8.34011 9.45874 10.01825 10.36762 11.37330 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002269 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.797005 B =12336.530286 C =12422.548198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.193 3.807 11 H 0.081 0.919 12 C -0.174 4.174 13 C 0.131 3.869 14 H 0.111 0.889 15 N -0.703 5.703 16 C 0.562 3.438 17 O -0.540 6.540 18 C -0.150 4.150 19 C -0.107 4.107 20 C 0.042 3.958 21 N -0.366 5.366 22 C 0.153 3.847 23 N -0.461 5.461 24 C 0.008 3.992 25 C -0.019 4.019 26 C 0.009 3.991 27 C -0.117 4.117 28 C -0.126 4.126 29 C -0.130 4.130 30 C -0.118 4.118 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.398 0.602 36 H 0.153 0.847 37 H 0.171 0.829 38 H 0.213 0.787 39 H 0.185 0.815 40 H 0.161 0.839 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.537 -20.764 -3.347 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.345 5.345 10 C 0.080 3.920 11 H 0.099 0.901 12 C -0.216 4.216 13 C 0.026 3.974 14 H 0.129 0.871 15 N -0.353 5.353 16 C 0.349 3.651 17 O -0.418 6.418 18 C -0.156 4.156 19 C -0.128 4.128 20 C -0.076 4.076 21 N -0.037 5.037 22 C -0.123 4.123 23 N -0.174 5.174 24 C -0.149 4.149 25 C -0.127 4.127 26 C -0.012 4.012 27 C -0.120 4.120 28 C -0.164 4.164 29 C -0.167 4.167 30 C -0.155 4.155 31 H 0.065 0.935 32 H 0.222 0.778 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.171 0.829 37 H 0.188 0.812 38 H 0.229 0.771 39 H 0.203 0.797 40 H 0.179 0.821 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.945 -21.391 -3.811 22.283 hybrid contribution -0.349 1.782 0.379 1.855 sum -5.294 -19.608 -3.432 20.598 Atomic orbital electron populations 1.69643 1.05107 1.25776 1.57543 1.24734 0.95515 0.97729 1.02761 0.86198 0.78711 0.83781 0.77548 1.21711 1.21799 1.20705 1.19290 0.91135 0.84068 1.42849 0.91043 1.42334 1.05798 0.99457 1.86912 1.21052 0.94516 0.84332 0.92127 0.90132 1.24288 1.01814 0.94933 1.00568 1.22349 0.92835 0.88042 0.94175 0.87127 1.45881 1.10711 1.24829 1.53846 1.17817 0.87729 0.80858 0.78652 1.90802 1.16015 1.74374 1.60648 1.21062 0.92855 0.97802 1.03865 1.21876 0.91486 0.99534 0.99874 1.21468 1.00523 0.87493 0.98165 1.42952 1.08003 1.18050 1.34722 1.24996 1.00043 0.86963 1.00252 1.70005 1.00239 1.26178 1.21008 1.22808 0.96417 0.94364 1.01295 1.19623 0.83327 1.01215 1.08540 1.20978 0.99679 0.89971 0.90598 1.23563 0.97019 0.98045 0.93349 1.22716 0.98547 0.99198 0.95934 1.22728 0.96674 1.01650 0.95672 1.22438 0.94362 1.01149 0.97599 0.93465 0.77790 0.92026 0.90164 0.76636 0.82933 0.81188 0.77067 0.79747 0.82150 0.90965 0.91371 0.89080 0.92469 0.90177 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.40 9.98 -15.06 -0.15 -6.55 16 8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 9 N -0.71 -16.35 5.35 -52.99 -0.28 -16.63 16 10 C 0.19 3.57 4.35 -67.49 -0.29 3.27 16 11 H 0.08 1.52 8.12 -51.93 -0.42 1.10 16 12 C -0.17 -2.94 7.68 -25.75 -0.20 -3.14 16 13 C 0.13 1.88 4.08 -67.48 -0.28 1.61 16 14 H 0.11 1.69 7.54 -51.93 -0.39 1.30 16 15 N -0.70 -8.61 5.25 -54.48 -0.29 -8.90 16 16 C 0.56 7.45 7.77 -12.57 -0.10 7.35 16 17 O -0.54 -8.97 16.02 5.25 0.08 -8.89 16 18 C -0.15 -1.59 6.05 -102.71 -0.62 -2.21 16 19 C -0.11 -0.82 9.66 -37.62 -0.36 -1.19 16 20 C 0.04 0.28 10.92 -16.47 -0.18 0.10 16 21 N -0.37 -3.18 2.94 -62.50 -0.18 -3.37 16 22 C 0.15 1.25 12.70 -90.10 -1.14 0.11 16 23 N -0.46 -4.84 11.18 -13.90 -0.16 -5.00 16 24 C 0.01 0.07 12.03 -16.90 -0.20 -0.13 16 25 C -0.02 -0.19 6.77 -84.11 -0.57 -0.76 16 26 C 0.01 0.09 9.70 -38.67 -0.38 -0.28 16 27 C -0.12 -1.73 1.06 -154.71 -0.16 -1.90 16 28 C -0.13 -1.72 7.84 -26.28 -0.21 -1.93 16 29 C -0.13 -1.84 8.08 -25.76 -0.21 -2.05 16 30 C -0.12 -1.62 6.77 -26.29 -0.18 -1.80 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 32 H 0.39 9.36 5.87 -40.82 -0.24 9.12 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.40 4.00 5.05 -40.82 -0.21 3.79 16 36 H 0.15 0.83 6.59 -52.48 -0.35 0.48 16 37 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.19 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.16 1.55 7.68 -52.49 -0.40 1.14 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 1.30 6.43 -51.93 -0.33 0.96 16 46 H 0.07 0.75 6.96 -51.93 -0.36 0.39 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -33.02 379.06 -10.79 -43.81 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.05 Total: 12.58 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -5.32 Total: -9.91 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -0.18 Total: -60.06 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.02 -10.79 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078671253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.601 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds