Wall clock time and date at job start Sat Apr 11 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46848 * 269.99797 * 3 2 1 5 5 H 1.48504 * 109.47125 * 29.99727 * 3 2 1 6 6 H 1.48494 * 109.47015 * 149.99963 * 3 2 1 7 7 C 1.38805 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00673 * 179.97438 * 9 7 2 11 11 H 1.09004 * 112.88082 * 26.84287 * 10 9 7 12 12 C 1.53948 * 113.66558 * 255.50101 * 10 9 7 13 13 C 1.53949 * 87.29624 * 220.69633 * 12 10 9 14 14 H 1.08994 * 113.66438 * 270.17344 * 13 12 10 15 15 N 1.46499 * 113.66606 * 139.20361 * 13 12 10 16 16 C 1.34776 * 119.99688 * 104.50257 * 15 13 12 17 17 O 1.21629 * 120.00396 * 0.02562 * 16 15 13 18 18 C 1.47309 * 119.99547 * 180.02562 * 16 15 13 19 19 C 1.46609 * 120.61987 * 0.02828 * 18 16 15 20 20 C 1.34229 * 119.81585 * 179.97438 * 19 18 16 21 21 N 1.37387 * 120.95479 * 359.97438 * 20 19 18 22 22 C 1.34890 * 132.31117 * 180.02562 * 21 20 19 23 23 N 1.30999 * 109.50736 * 179.97438 * 22 21 20 24 24 C 1.33130 * 109.92925 * 359.77325 * 23 22 21 25 25 C 1.38200 * 120.82683 * 0.02562 * 21 20 19 26 26 C 1.38578 * 120.61201 * 180.02562 * 18 16 15 27 27 C 1.52906 * 113.74952 * 158.26943 * 10 9 7 28 28 C 1.52910 * 121.13599 * 265.11281 * 27 10 9 29 29 C 1.53947 * 86.78264 * 100.81274 * 28 27 10 30 30 C 1.52910 * 121.13358 * 13.66370 * 27 10 9 31 31 H 0.96996 * 120.00298 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99390 * 0.02562 * 9 7 2 33 33 H 1.09005 * 113.57785 * 106.09869 * 12 10 9 34 34 H 1.09000 * 113.65017 * 335.31115 * 12 10 9 35 35 H 0.96999 * 119.99830 * 284.51478 * 15 13 12 36 36 H 1.08007 * 120.08874 * 359.97438 * 19 18 16 37 37 H 1.08001 * 119.52220 * 180.02562 * 20 19 18 38 38 H 1.07998 * 125.24887 * 359.96396 * 22 21 20 39 39 H 1.07994 * 126.30984 * 180.26430 * 24 23 22 40 40 H 1.08001 * 120.49397 * 0.02562 * 26 18 16 41 41 H 1.09002 * 113.66300 * 215.28327 * 28 27 10 42 42 H 1.09005 * 113.66366 * 346.33737 * 28 27 10 43 43 H 1.09002 * 113.58133 * 270.13110 * 29 28 27 44 44 H 1.08999 * 113.65451 * 139.35348 * 29 28 27 45 45 H 1.09000 * 113.65807 * 13.66140 * 30 27 10 46 46 H 1.08999 * 113.66129 * 144.71483 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 1 3.0464 -3.5755 0.4543 12 6 2.0604 -4.3690 -1.3632 13 6 1.8555 -5.6867 -0.5939 14 1 2.7867 -6.1768 -0.3100 15 7 0.9034 -6.5986 -1.2327 16 6 1.3505 -7.6838 -1.8953 17 8 2.5444 -7.9062 -1.9625 18 6 0.3932 -8.6004 -2.5381 19 6 -1.0487 -8.3451 -2.4661 20 6 -1.9066 -9.1907 -3.0582 21 7 -1.4543 -10.2976 -3.7348 22 6 -2.0957 -11.2797 -4.4008 23 7 -1.2195 -12.1247 -4.8847 24 6 0.0123 -11.7341 -4.5647 25 6 -0.1023 -10.5700 -3.8233 26 6 0.8389 -9.7202 -3.2222 27 6 1.2405 -4.8398 0.5209 28 6 1.3240 -5.2772 1.9838 29 6 -0.0047 -4.5283 2.1931 30 6 -0.2755 -4.7386 0.6924 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0016 33 1 3.0167 -4.3120 -1.8833 34 1 1.2167 -4.0993 -1.9985 35 1 -0.0487 -6.4213 -1.1790 36 1 -1.4195 -7.4789 -1.9382 37 1 -2.9678 -8.9978 -3.0026 38 1 -3.1666 -11.3575 -4.5171 39 1 0.9315 -12.2340 -4.8321 40 1 1.8949 -9.9353 -3.2923 41 1 1.2451 -6.3554 2.1232 42 1 2.1631 -4.8390 2.5243 43 1 0.1235 -3.4821 2.4707 44 1 -0.7059 -5.0546 2.8408 45 1 -0.7143 -3.8701 0.2012 46 1 -0.8039 -5.6654 0.4689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078671253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:04 Heat of formation + Delta-G solvation = 96.974161 kcal Electronic energy + Delta-G solvation = -28782.151040 eV Core-core repulsion = 24867.162473 eV Total energy + Delta-G solvation = -3914.988567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -43.71755 -41.93888 -40.29419 -37.83814 -36.27579 -35.78283 -34.41270 -34.01679 -32.06633 -31.47532 -29.36527 -26.83192 -26.64582 -25.65443 -25.25003 -24.19671 -23.41483 -22.80172 -21.79022 -21.54423 -19.65319 -19.20651 -18.90495 -18.31044 -17.67591 -16.98740 -16.86593 -16.60662 -16.40488 -16.15510 -15.93083 -15.79604 -15.51913 -15.27621 -14.82374 -14.51041 -14.36624 -14.06319 -13.84581 -13.52030 -13.17985 -13.10731 -12.89537 -12.86933 -12.75901 -12.73018 -12.33286 -12.24607 -12.04759 -11.85398 -11.72926 -11.41033 -11.34332 -11.28283 -10.98830 -10.94255 -10.70953 -10.35305 -9.93006 -8.94562 -8.58446 -7.93917 -5.20272 -0.55897 0.13188 1.47732 1.48286 1.56313 1.61081 1.62658 2.04675 2.08033 2.53397 2.57093 3.36911 3.43035 3.46446 3.50145 3.61269 3.63983 3.77023 3.80004 3.88598 3.93463 3.99718 4.02671 4.13420 4.28420 4.42615 4.52097 4.57246 4.67722 4.70350 4.75384 4.78491 4.86856 4.90849 5.01261 5.03322 5.11107 5.15490 5.22318 5.32151 5.40902 5.47479 5.51357 5.52286 5.63981 5.69924 6.17848 6.29080 6.51961 6.79810 7.15164 7.36763 8.12611 8.37561 9.28930 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002269 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.797005 B =12336.530286 C =12422.548198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.174 3.826 11 H 0.073 0.927 12 C -0.170 4.170 13 C 0.150 3.850 14 H 0.106 0.894 15 N -0.692 5.692 16 C 0.563 3.437 17 O -0.580 6.580 18 C -0.162 4.162 19 C -0.118 4.118 20 C 0.053 3.947 21 N -0.372 5.372 22 C 0.165 3.835 23 N -0.495 5.495 24 C -0.001 4.001 25 C -0.038 4.038 26 C 0.002 3.998 27 C -0.108 4.108 28 C -0.117 4.117 29 C -0.130 4.130 30 C -0.110 4.110 31 H 0.250 0.750 32 H 0.380 0.620 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.178 0.822 37 H 0.215 0.785 38 H 0.252 0.748 39 H 0.199 0.801 40 H 0.155 0.845 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 -22.463 -3.204 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.795 3.205 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.354 5.354 10 C 0.063 3.937 11 H 0.091 0.909 12 C -0.212 4.212 13 C 0.044 3.956 14 H 0.124 0.876 15 N -0.342 5.342 16 C 0.352 3.648 17 O -0.462 6.462 18 C -0.168 4.168 19 C -0.138 4.138 20 C -0.064 4.064 21 N -0.044 5.044 22 C -0.111 4.111 23 N -0.209 5.209 24 C -0.157 4.157 25 C -0.146 4.146 26 C -0.019 4.019 27 C -0.110 4.110 28 C -0.155 4.155 29 C -0.167 4.167 30 C -0.148 4.148 31 H 0.059 0.941 32 H 0.214 0.786 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.250 0.750 36 H 0.195 0.805 37 H 0.232 0.768 38 H 0.268 0.732 39 H 0.216 0.784 40 H 0.172 0.828 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.719 -23.123 -3.663 24.357 hybrid contribution 0.220 2.190 0.276 2.218 sum -6.499 -20.933 -3.387 22.179 Atomic orbital electron populations 1.69776 1.06285 1.25908 1.59581 1.25427 0.96324 1.00623 1.03944 0.85256 0.77809 0.80171 0.77227 1.21809 1.22258 1.19726 1.19628 0.91393 0.85425 1.40780 0.91023 1.42414 1.05581 1.00185 1.87221 1.21301 0.94716 0.83934 0.93771 0.90909 1.24130 1.01049 0.96548 0.99471 1.21952 0.93182 0.87306 0.93119 0.87631 1.45678 1.11013 1.24132 1.53385 1.18206 0.87624 0.80946 0.78028 1.90782 1.17938 1.75349 1.62096 1.20948 0.94032 0.97393 1.04385 1.22088 0.89823 1.00927 1.00983 1.22165 1.02389 0.85856 0.96009 1.43174 1.07441 1.18771 1.35014 1.25815 1.01341 0.85713 0.98208 1.70021 1.00837 1.27585 1.22427 1.23166 0.97034 0.94488 1.01046 1.19639 0.84219 1.01508 1.09280 1.20976 0.99737 0.90288 0.90883 1.23314 0.97611 0.95584 0.94502 1.22725 0.97929 1.00588 0.94231 1.22637 0.97758 0.99904 0.96436 1.22490 0.93358 1.01981 0.96947 0.94075 0.78580 0.92848 0.91069 0.75039 0.80500 0.76838 0.73212 0.78448 0.82755 0.88309 0.92197 0.92743 0.89784 0.92770 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.87 13.06 21.65 0.28 -56.59 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.24 -12.92 9.98 84.03 0.84 -12.09 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.72 -33.88 5.35 -321.58 -1.72 -35.60 16 10 C 0.17 6.51 4.35 45.28 0.20 6.71 16 11 H 0.07 2.81 8.12 -2.38 -0.02 2.79 16 12 C -0.17 -5.80 7.68 31.23 0.24 -5.56 16 13 C 0.15 4.17 4.08 45.28 0.18 4.36 16 14 H 0.11 3.14 7.54 -2.39 -0.02 3.13 16 15 N -0.69 -15.65 5.25 -444.52 -2.34 -17.98 16 16 C 0.56 14.33 7.77 86.63 0.67 15.01 16 17 O -0.58 -19.33 16.02 -4.12 -0.07 -19.40 16 18 C -0.16 -3.20 6.05 -18.62 -0.11 -3.31 16 19 C -0.12 -1.43 9.66 23.54 0.23 -1.20 16 20 C 0.05 0.50 10.92 82.91 0.91 1.40 16 21 N -0.37 -5.42 2.94 -351.64 -1.03 -6.45 16 22 C 0.16 2.20 12.70 180.17 2.29 4.49 16 23 N -0.49 -9.58 11.18 -197.90 -2.21 -11.80 16 24 C 0.00 -0.03 12.03 84.55 1.02 0.99 16 25 C -0.04 -0.72 6.77 38.71 0.26 -0.46 16 26 C 0.00 0.05 9.70 22.86 0.22 0.27 16 27 C -0.11 -3.07 1.06 -52.31 -0.06 -3.12 16 28 C -0.12 -2.96 7.84 30.88 0.24 -2.72 16 29 C -0.13 -3.47 8.08 31.23 0.25 -3.22 16 30 C -0.11 -2.83 6.77 30.88 0.21 -2.62 16 31 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.38 18.91 5.87 -92.71 -0.54 18.37 16 33 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.41 7.01 5.05 -92.71 -0.47 6.54 16 36 H 0.18 1.15 6.59 -2.91 -0.02 1.13 16 37 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.25 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 40 H 0.15 3.11 7.68 -2.91 -0.02 3.09 16 41 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.05 1.72 6.43 -2.39 -0.02 1.71 16 46 H 0.11 1.92 6.96 -2.39 -0.02 1.91 16 Total: -1.00 -74.26 379.06 3.01 -71.25 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.02 Total: 33.63 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 8.06 Total: -4.55 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -7.02 Total: -128.42 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.07 Total: -19.40 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.26 3.01 -71.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078671253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.225 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds