Wall clock time and date at job start Sat Apr 11 2020 06:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48498 * 109.46939 * 269.99782 * 3 2 1 5 5 H 1.48499 * 109.47137 * 29.99660 * 3 2 1 6 6 H 1.48499 * 109.47214 * 149.99458 * 3 2 1 7 7 C 1.38807 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99748 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00583 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00485 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88262 * 23.65456 * 10 9 7 12 12 C 1.53947 * 113.74507 * 252.22984 * 10 9 7 13 13 C 1.53957 * 87.29521 * 270.24808 * 12 10 9 14 14 H 1.08995 * 113.74724 * 89.75188 * 13 12 10 15 15 N 1.46500 * 113.66170 * 220.79719 * 13 12 10 16 16 C 1.34770 * 119.99969 * 252.18497 * 15 13 12 17 17 O 1.21586 * 120.00271 * 0.02562 * 16 15 13 18 18 C 1.47655 * 120.00141 * 179.97438 * 16 15 13 19 19 C 1.41775 * 120.37076 * 359.97438 * 18 16 15 20 20 C 1.34536 * 120.14429 * 180.02562 * 19 18 16 21 21 N 1.36720 * 120.96047 * 0.02562 * 20 19 18 22 22 C 1.36435 * 132.26999 * 180.34003 * 21 20 19 23 23 C 1.35450 * 107.22324 * 180.10880 * 22 21 20 24 24 N 1.33181 * 108.61957 * 359.57272 * 23 22 21 25 25 C 1.32651 * 109.12786 * 0.26830 * 24 23 22 26 26 C 1.38443 * 120.37111 * 180.02562 * 18 16 15 27 27 C 1.52910 * 113.66122 * 154.99830 * 10 9 7 28 28 C 1.52914 * 121.13269 * 215.38194 * 27 10 9 29 29 C 1.53956 * 86.77911 * 100.82409 * 28 27 10 30 30 C 1.52906 * 121.13728 * 323.94436 * 27 10 9 31 31 H 0.96993 * 119.99866 * 0.02562 * 1 2 3 32 32 H 0.97007 * 119.99342 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.58087 * 155.64524 * 12 10 9 34 34 H 1.08997 * 113.58445 * 24.85023 * 12 10 9 35 35 H 0.97003 * 119.99852 * 72.18375 * 15 13 12 36 36 H 1.07996 * 119.92341 * 0.03469 * 19 18 16 37 37 H 1.07999 * 119.52166 * 179.97438 * 20 19 18 38 38 H 1.08003 * 126.39111 * 359.97438 * 22 21 20 39 39 H 1.08002 * 125.69359 * 179.84420 * 23 22 21 40 40 H 1.07995 * 120.45894 * 359.97438 * 26 18 16 41 41 H 1.09000 * 113.65935 * 215.29535 * 28 27 10 42 42 H 1.08992 * 113.66295 * 346.34948 * 28 27 10 43 43 H 1.08998 * 113.57517 * 270.12894 * 29 28 27 44 44 H 1.08998 * 113.57786 * 139.33512 * 29 28 27 45 45 H 1.08997 * 113.66570 * 13.65259 * 30 27 10 46 46 H 1.08999 * 113.65778 * 144.71344 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5277 -3.2977 -0.4023 12 6 4.7941 -2.7929 1.3432 13 6 6.0280 -2.0396 0.8137 14 1 6.0236 -0.9740 1.0430 15 7 7.2994 -2.6882 1.1442 16 6 8.1117 -2.1451 2.0724 17 8 7.7891 -1.1171 2.6359 18 6 9.3928 -2.7990 2.4059 19 6 9.7760 -3.9988 1.7549 20 6 10.9441 -4.5911 2.0627 21 7 11.7792 -4.0534 3.0022 22 6 12.9948 -4.4459 3.4817 23 6 13.3712 -3.5368 4.4126 24 7 12.4252 -2.6037 4.5027 25 6 11.4462 -2.8941 3.6559 26 6 10.2328 -2.2481 3.3585 27 6 5.5186 -2.3674 -0.5903 28 6 6.1211 -3.5145 -1.4022 29 6 5.7534 -2.7035 -2.6581 30 6 5.8128 -1.4448 -1.7736 31 1 -0.4849 0.8400 -0.0004 32 1 3.8647 -0.3620 0.0007 33 1 4.9673 -3.8576 1.4999 34 1 4.3225 -2.3099 2.1989 35 1 7.5565 -3.5085 0.6949 36 1 9.1288 -4.4380 1.0102 37 1 11.2258 -5.5050 1.5609 38 1 13.5519 -5.3197 3.1775 39 1 14.2878 -3.5618 4.9832 40 1 9.9599 -1.3350 3.8666 41 1 7.1948 -3.6355 -1.2584 42 1 5.5718 -4.4514 -1.3101 43 1 4.7562 -2.9207 -3.0409 44 1 6.5195 -2.7285 -3.4330 45 1 5.0173 -0.7284 -1.9783 46 1 6.7999 -0.9842 -1.7342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078681402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:17 Heat of formation + Delta-G solvation = 124.663816 kcal Electronic energy + Delta-G solvation = -28912.804758 eV Core-core repulsion = 24999.016904 eV Total energy + Delta-G solvation = -3913.787854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -43.22153 -40.84297 -39.37473 -37.29339 -35.26085 -34.33409 -33.97208 -32.49131 -30.81692 -30.21636 -29.27883 -25.75230 -25.61073 -24.33494 -23.99070 -23.63092 -22.35935 -22.10071 -20.66614 -20.45527 -18.53093 -18.36034 -17.93248 -17.15344 -16.95261 -16.34029 -16.03959 -15.46509 -15.23364 -15.02393 -14.87615 -14.77759 -14.45538 -14.07261 -13.94420 -13.56620 -13.09912 -12.80968 -12.69007 -12.37265 -12.34575 -12.24762 -12.13707 -12.04172 -11.55472 -11.32734 -11.05634 -10.94626 -10.89170 -10.56514 -10.29380 -10.24915 -9.99480 -9.97298 -9.67966 -9.58346 -9.34521 -8.93655 -8.82962 -8.28980 -7.34291 -5.82061 -3.18951 0.09930 0.62225 2.11581 2.28593 2.69207 2.95697 3.35408 3.36747 3.41523 3.45409 3.81098 4.00876 4.15649 4.35378 4.50494 4.53292 4.55827 4.66711 4.80832 4.85349 4.93527 5.00195 5.01833 5.14637 5.23096 5.30065 5.47194 5.49644 5.56311 5.61633 5.71004 5.77095 5.79439 5.87515 5.92991 5.98530 6.04535 6.14945 6.22572 6.35843 6.45930 6.53481 6.54900 6.56283 6.68301 6.87289 7.40620 7.44237 7.93829 8.10615 8.37118 9.14195 9.86589 10.04833 11.35622 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002527 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.731601 B =11079.142948 C =11878.149869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.879 3.121 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.092 0.908 9 N -0.725 5.725 10 C 0.203 3.797 11 H 0.078 0.922 12 C -0.180 4.180 13 C 0.135 3.865 14 H 0.114 0.886 15 N -0.705 5.705 16 C 0.559 3.441 17 O -0.528 6.528 18 C -0.122 4.122 19 C -0.116 4.116 20 C 0.050 3.950 21 N -0.355 5.355 22 C -0.092 4.092 23 C 0.032 3.968 24 N -0.478 5.478 25 C 0.208 3.792 26 C 0.000 4.000 27 C -0.127 4.127 28 C -0.114 4.114 29 C -0.132 4.132 30 C -0.129 4.129 31 H 0.261 0.739 32 H 0.364 0.636 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.166 0.834 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.078 0.922 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.426 -14.163 0.284 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.110 0.890 9 N -0.364 5.364 10 C 0.091 3.909 11 H 0.096 0.904 12 C -0.222 4.222 13 C 0.032 3.968 14 H 0.132 0.868 15 N -0.356 5.356 16 C 0.345 3.655 17 O -0.405 6.405 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.071 4.071 21 N -0.027 5.027 22 C -0.225 4.225 23 C -0.121 4.121 24 N -0.198 5.198 25 C -0.033 4.033 26 C -0.022 4.022 27 C -0.130 4.130 28 C -0.152 4.152 29 C -0.170 4.170 30 C -0.166 4.166 31 H 0.071 0.929 32 H 0.197 0.803 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.171 0.829 37 H 0.186 0.814 38 H 0.203 0.797 39 H 0.201 0.799 40 H 0.184 0.816 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 25.912 -12.808 1.178 28.928 hybrid contribution 0.868 -0.002 -0.665 1.093 sum 26.779 -12.809 0.513 29.690 Atomic orbital electron populations 1.69692 1.05097 1.25976 1.56904 1.24653 0.95213 0.97191 1.01612 0.86635 0.79526 0.85082 0.77895 1.20943 1.21576 1.20036 1.19054 0.80163 0.94825 1.43728 0.88973 1.42461 1.03947 1.01483 1.88489 1.20563 0.88201 0.90271 0.91900 0.90395 1.24274 0.96541 0.99431 1.01963 1.22521 0.80453 0.98493 0.95376 0.86844 1.45919 1.20946 1.28187 1.40543 1.17903 0.83101 0.84379 0.80127 1.90842 1.74567 1.23584 1.51514 1.20029 0.96593 0.96853 0.99596 1.20820 0.96055 0.95549 1.01272 1.21436 0.91521 1.00581 0.93612 1.42878 1.14769 1.19131 1.25952 1.22812 0.88415 1.06115 1.05118 1.22638 0.99526 0.91417 0.98560 1.70714 1.01508 1.26956 1.20617 1.20817 0.97953 0.88177 0.96389 1.20743 0.87824 0.99110 0.94489 1.23666 0.99444 0.97836 0.92020 1.22521 0.99559 0.96965 0.96187 1.22737 1.01793 0.96670 0.95763 1.22664 1.01528 0.97004 0.95448 0.92933 0.80258 0.90710 0.90586 0.76826 0.82889 0.81371 0.79729 0.79893 0.81623 0.90748 0.91043 0.89728 0.92099 0.90359 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 22.00 27.74 -169.99 -4.71 17.28 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.25 -6.75 10.45 -15.06 -0.16 -6.90 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.72 -16.32 4.66 -52.99 -0.25 -16.57 16 10 C 0.20 3.60 4.36 -67.49 -0.29 3.31 16 11 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 12 C -0.18 -2.88 7.69 -25.75 -0.20 -3.08 16 13 C 0.14 2.00 4.04 -67.48 -0.27 1.73 16 14 H 0.11 2.04 7.46 -51.93 -0.39 1.65 16 15 N -0.71 -8.14 5.20 -54.37 -0.28 -8.42 16 16 C 0.56 7.46 7.77 -12.42 -0.10 7.36 16 17 O -0.53 -9.38 15.96 5.29 0.08 -9.29 16 18 C -0.12 -1.27 5.90 -104.63 -0.62 -1.89 16 19 C -0.12 -0.79 9.48 -39.54 -0.37 -1.16 16 20 C 0.05 0.30 10.91 -16.68 -0.18 0.12 16 21 N -0.36 -3.08 2.94 -62.75 -0.18 -3.26 16 22 C -0.09 -0.64 11.74 -16.50 -0.19 -0.83 16 23 C 0.03 0.27 11.83 -17.96 -0.21 0.06 16 24 N -0.48 -5.82 11.31 -12.80 -0.14 -5.97 16 25 C 0.21 2.39 7.79 -155.96 -1.22 1.18 16 26 C 0.00 -0.01 9.70 -38.60 -0.37 -0.38 16 27 C -0.13 -1.76 0.92 -154.71 -0.14 -1.90 16 28 C -0.11 -1.18 7.15 -26.28 -0.19 -1.37 16 29 C -0.13 -1.54 8.08 -25.75 -0.21 -1.75 16 30 C -0.13 -1.81 7.62 -26.28 -0.20 -2.01 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.36 8.27 5.47 -40.82 -0.22 8.05 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.40 3.22 5.10 -40.82 -0.21 3.01 16 36 H 0.15 0.57 6.46 -52.49 -0.34 0.23 16 37 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.19 0.55 8.06 -52.48 -0.42 0.12 16 39 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.17 2.01 7.67 -52.49 -0.40 1.61 16 41 H 0.07 0.60 7.03 -51.93 -0.36 0.23 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -35.37 377.70 -10.18 -45.55 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.14 Total: 10.28 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -5.02 Total: -7.34 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -0.08 Total: -62.18 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.08 Total: -9.29 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.37 -10.18 -45.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078681402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.216 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.73 seconds