Wall clock time and date at job start Sat Apr 11 2020 06:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48498 * 109.46939 * 269.99782 * 3 2 1 5 5 H 1.48499 * 109.47137 * 29.99660 * 3 2 1 6 6 H 1.48499 * 109.47214 * 149.99458 * 3 2 1 7 7 C 1.38807 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99748 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00583 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00485 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88262 * 23.65456 * 10 9 7 12 12 C 1.53947 * 113.74507 * 252.22984 * 10 9 7 13 13 C 1.53957 * 87.29521 * 270.24808 * 12 10 9 14 14 H 1.08995 * 113.74724 * 89.75188 * 13 12 10 15 15 N 1.46500 * 113.66170 * 220.79719 * 13 12 10 16 16 C 1.34770 * 119.99969 * 252.18497 * 15 13 12 17 17 O 1.21586 * 120.00271 * 0.02562 * 16 15 13 18 18 C 1.47655 * 120.00141 * 179.97438 * 16 15 13 19 19 C 1.41775 * 120.37076 * 359.97438 * 18 16 15 20 20 C 1.34536 * 120.14429 * 180.02562 * 19 18 16 21 21 N 1.36720 * 120.96047 * 0.02562 * 20 19 18 22 22 C 1.36435 * 132.26999 * 180.34003 * 21 20 19 23 23 C 1.35450 * 107.22324 * 180.10880 * 22 21 20 24 24 N 1.33181 * 108.61957 * 359.57272 * 23 22 21 25 25 C 1.32651 * 109.12786 * 0.26830 * 24 23 22 26 26 C 1.38443 * 120.37111 * 180.02562 * 18 16 15 27 27 C 1.52910 * 113.66122 * 154.99830 * 10 9 7 28 28 C 1.52914 * 121.13269 * 215.38194 * 27 10 9 29 29 C 1.53956 * 86.77911 * 100.82409 * 28 27 10 30 30 C 1.52906 * 121.13728 * 323.94436 * 27 10 9 31 31 H 0.96993 * 119.99866 * 0.02562 * 1 2 3 32 32 H 0.97007 * 119.99342 * 359.97438 * 9 7 2 33 33 H 1.09004 * 113.58087 * 155.64524 * 12 10 9 34 34 H 1.08997 * 113.58445 * 24.85023 * 12 10 9 35 35 H 0.97003 * 119.99852 * 72.18375 * 15 13 12 36 36 H 1.07996 * 119.92341 * 0.03469 * 19 18 16 37 37 H 1.07999 * 119.52166 * 179.97438 * 20 19 18 38 38 H 1.08003 * 126.39111 * 359.97438 * 22 21 20 39 39 H 1.08002 * 125.69359 * 179.84420 * 23 22 21 40 40 H 1.07995 * 120.45894 * 359.97438 * 26 18 16 41 41 H 1.09000 * 113.65935 * 215.29535 * 28 27 10 42 42 H 1.08992 * 113.66295 * 346.34948 * 28 27 10 43 43 H 1.08998 * 113.57517 * 270.12894 * 29 28 27 44 44 H 1.08998 * 113.57786 * 139.33512 * 29 28 27 45 45 H 1.08997 * 113.66570 * 13.65259 * 30 27 10 46 46 H 1.08999 * 113.65778 * 144.71344 * 30 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5277 -3.2977 -0.4023 12 6 4.7941 -2.7929 1.3432 13 6 6.0280 -2.0396 0.8137 14 1 6.0236 -0.9740 1.0430 15 7 7.2994 -2.6882 1.1442 16 6 8.1117 -2.1451 2.0724 17 8 7.7891 -1.1171 2.6359 18 6 9.3928 -2.7990 2.4059 19 6 9.7760 -3.9988 1.7549 20 6 10.9441 -4.5911 2.0627 21 7 11.7792 -4.0534 3.0022 22 6 12.9948 -4.4459 3.4817 23 6 13.3712 -3.5368 4.4126 24 7 12.4252 -2.6037 4.5027 25 6 11.4462 -2.8941 3.6559 26 6 10.2328 -2.2481 3.3585 27 6 5.5186 -2.3674 -0.5903 28 6 6.1211 -3.5145 -1.4022 29 6 5.7534 -2.7035 -2.6581 30 6 5.8128 -1.4448 -1.7736 31 1 -0.4849 0.8400 -0.0004 32 1 3.8647 -0.3620 0.0007 33 1 4.9673 -3.8576 1.4999 34 1 4.3225 -2.3099 2.1989 35 1 7.5565 -3.5085 0.6949 36 1 9.1288 -4.4380 1.0102 37 1 11.2258 -5.5050 1.5609 38 1 13.5519 -5.3197 3.1775 39 1 14.2878 -3.5618 4.9832 40 1 9.9599 -1.3350 3.8666 41 1 7.1948 -3.6355 -1.2584 42 1 5.5718 -4.4514 -1.3101 43 1 4.7562 -2.9207 -3.0409 44 1 6.5195 -2.7285 -3.4330 45 1 5.0173 -0.7284 -1.9783 46 1 6.7999 -0.9842 -1.7342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078681402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:12 Heat of formation + Delta-G solvation = 101.076472 kcal Electronic energy + Delta-G solvation = -28913.827582 eV Core-core repulsion = 24999.016904 eV Total energy + Delta-G solvation = -3914.810678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -43.83767 -42.01403 -40.43031 -38.00364 -36.59130 -35.77902 -34.71545 -34.11508 -32.28061 -31.22923 -29.97390 -26.85311 -26.74563 -25.55865 -25.25060 -24.30936 -23.72465 -22.78440 -21.72159 -21.62330 -20.14362 -19.21709 -18.92397 -18.34295 -17.86223 -17.06914 -16.98623 -16.59097 -16.44616 -16.34853 -15.91502 -15.70232 -15.55224 -15.07815 -14.72412 -14.70185 -14.54401 -14.14283 -13.98982 -13.72069 -13.65715 -13.13703 -12.97216 -12.92310 -12.87417 -12.70008 -12.55108 -12.31338 -12.08652 -11.93433 -11.86808 -11.39020 -11.35634 -11.21859 -11.05248 -10.90677 -10.78449 -10.00228 -9.90371 -9.31895 -8.90978 -8.05659 -5.37809 -0.63461 0.05392 1.33239 1.35867 1.41470 1.57572 1.58730 1.96027 1.96508 2.43481 2.55031 3.18000 3.24575 3.27494 3.43561 3.47213 3.54537 3.74635 3.75943 3.91759 3.96993 3.99655 4.07152 4.13919 4.33103 4.42442 4.51448 4.54226 4.63912 4.66233 4.75772 4.85785 4.87663 4.88028 4.96471 5.03582 5.09450 5.17723 5.21622 5.26665 5.34458 5.40671 5.57713 5.61491 5.66085 5.77402 6.01227 6.20173 6.48489 6.79528 7.04512 7.13602 7.81977 7.98222 9.15559 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019256 B = 0.002527 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.731601 B =11079.142948 C =11878.149869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.057 4.057 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.224 4.224 8 H 0.066 0.934 9 N -0.732 5.732 10 C 0.181 3.819 11 H 0.076 0.924 12 C -0.171 4.171 13 C 0.143 3.857 14 H 0.076 0.924 15 N -0.683 5.683 16 C 0.557 3.443 17 O -0.584 6.584 18 C -0.118 4.118 19 C -0.121 4.121 20 C 0.066 3.934 21 N -0.359 5.359 22 C -0.069 4.069 23 C 0.009 3.991 24 N -0.525 5.525 25 C 0.178 3.822 26 C -0.029 4.029 27 C -0.115 4.115 28 C -0.094 4.094 29 C -0.127 4.127 30 C -0.140 4.140 31 H 0.257 0.743 32 H 0.363 0.637 33 H 0.109 0.891 34 H 0.040 0.960 35 H 0.418 0.582 36 H 0.193 0.807 37 H 0.222 0.778 38 H 0.234 0.766 39 H 0.208 0.792 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.044 0.956 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.590 -18.114 -1.615 35.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.249 4.249 3 Si 0.770 3.230 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.355 4.355 8 H 0.084 0.916 9 N -0.372 5.372 10 C 0.071 3.929 11 H 0.094 0.906 12 C -0.213 4.213 13 C 0.037 3.963 14 H 0.094 0.906 15 N -0.335 5.335 16 C 0.345 3.655 17 O -0.465 6.465 18 C -0.127 4.127 19 C -0.141 4.141 20 C -0.054 4.054 21 N -0.031 5.031 22 C -0.201 4.201 23 C -0.143 4.143 24 N -0.246 5.246 25 C -0.063 4.063 26 C -0.051 4.051 27 C -0.117 4.117 28 C -0.132 4.132 29 C -0.165 4.165 30 C -0.177 4.177 31 H 0.066 0.934 32 H 0.196 0.804 33 H 0.127 0.873 34 H 0.059 0.941 35 H 0.258 0.742 36 H 0.210 0.790 37 H 0.239 0.761 38 H 0.250 0.750 39 H 0.225 0.775 40 H 0.156 0.844 41 H 0.131 0.869 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 30.147 -16.837 -0.748 34.538 hybrid contribution -0.334 1.091 -0.028 1.141 sum 29.813 -15.746 -0.776 33.724 Atomic orbital electron populations 1.69846 1.06773 1.26482 1.59857 1.25341 0.95957 1.00587 1.03044 0.85615 0.78399 0.80868 0.78156 1.20042 1.22335 1.19009 1.19055 0.82229 0.93570 1.40601 0.91577 1.42454 1.02429 1.03480 1.88847 1.20861 0.90013 0.88098 0.93965 0.90566 1.24176 0.96548 1.01309 0.99277 1.22075 0.81530 0.96617 0.96031 0.90623 1.45585 1.19337 1.28525 1.40024 1.18390 0.83994 0.83690 0.79446 1.90821 1.75927 1.26224 1.53487 1.19845 0.94715 0.98267 0.99886 1.21167 0.97225 0.93933 1.01812 1.22312 0.90225 1.01193 0.91673 1.43168 1.15550 1.18251 1.26102 1.23580 0.87290 1.06179 1.03057 1.23262 0.99946 0.91339 0.99760 1.70634 1.02928 1.29106 1.21981 1.20663 0.97960 0.89911 0.97750 1.20572 0.89268 0.99245 0.96013 1.23475 0.95998 1.00657 0.91562 1.22600 1.01759 0.95821 0.92996 1.22698 1.01929 0.95029 0.96816 1.22763 1.01094 0.97456 0.96415 0.93362 0.80438 0.87252 0.94094 0.74174 0.78991 0.76102 0.75015 0.77502 0.84386 0.86851 0.89300 0.91348 0.89469 0.93747 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.01 13.97 21.65 0.30 -62.71 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 3 Si 0.94 47.25 27.74 68.60 1.90 49.15 16 4 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.30 -15.13 7.11 99.48 0.71 -14.43 16 6 H -0.26 -12.66 6.52 99.48 0.65 -12.01 16 7 C -0.22 -12.60 10.45 84.03 0.88 -11.73 16 8 H 0.07 4.01 8.06 -2.91 -0.02 3.99 16 9 N -0.73 -33.83 4.66 -321.57 -1.50 -35.33 16 10 C 0.18 6.35 4.36 45.28 0.20 6.55 16 11 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 12 C -0.17 -5.37 7.69 31.23 0.24 -5.13 16 13 C 0.14 4.08 4.04 45.29 0.18 4.27 16 14 H 0.08 2.81 7.46 -2.39 -0.02 2.79 16 15 N -0.68 -13.97 5.20 -444.19 -2.31 -16.28 16 16 C 0.56 14.57 7.77 86.73 0.67 15.25 16 17 O -0.58 -21.88 15.96 -3.99 -0.06 -21.94 16 18 C -0.12 -2.33 5.90 -19.87 -0.12 -2.44 16 19 C -0.12 -1.07 9.48 22.30 0.21 -0.86 16 20 C 0.07 0.43 10.91 83.08 0.91 1.34 16 21 N -0.36 -4.95 2.94 -352.44 -1.04 -5.98 16 22 C -0.07 -0.66 11.74 83.33 0.98 0.32 16 23 C 0.01 0.14 11.83 83.84 0.99 1.13 16 24 N -0.53 -12.92 11.31 -194.41 -2.20 -15.12 16 25 C 0.18 4.04 7.79 133.97 1.04 5.09 16 26 C -0.03 -0.71 9.70 22.91 0.22 -0.49 16 27 C -0.11 -2.93 0.92 -52.31 -0.05 -2.98 16 28 C -0.09 -1.46 7.15 30.89 0.22 -1.24 16 29 C -0.13 -2.52 8.08 31.23 0.25 -2.26 16 30 C -0.14 -3.66 7.62 30.88 0.24 -3.43 16 31 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 32 H 0.36 16.89 5.47 -92.70 -0.51 16.38 16 33 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.42 4.59 5.10 -92.71 -0.47 4.11 16 36 H 0.19 0.05 6.46 -2.91 -0.02 0.03 16 37 H 0.22 -0.91 8.06 -2.91 -0.02 -0.93 16 38 H 0.23 -0.17 8.06 -2.91 -0.02 -0.19 16 39 H 0.21 1.68 8.06 -2.91 -0.02 1.66 16 40 H 0.14 3.91 7.67 -2.91 -0.02 3.89 16 41 H 0.11 0.96 7.03 -2.39 -0.02 0.94 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.04 1.47 7.58 -2.39 -0.02 1.45 16 46 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -87.28 377.70 2.62 -84.66 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: -0.01 Total: 23.15 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 7.54 Total: 0.41 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -6.74 Total: -135.42 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.94 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.90 Total: 49.15 kcal Total: -87.28 2.62 -84.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078681402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.732 kcal (2) G-P(sol) polarization free energy of solvation -87.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds