Wall clock time and date at job start Sat Apr 11 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09002 * 113.66394 * 220.79902 * 13 12 10 15 15 N 1.46499 * 113.66265 * 89.73701 * 13 12 10 16 16 C 1.34778 * 119.99554 * 104.50571 * 15 13 12 17 17 O 1.21569 * 120.00184 * 0.02562 * 16 15 13 18 18 C 1.47768 * 119.99819 * 179.97438 * 16 15 13 19 19 N 1.32743 * 120.05615 * 0.02562 * 18 16 15 20 20 C 1.31725 * 122.13404 * 179.97438 * 19 18 16 21 21 C 1.38308 * 121.68357 * 0.02562 * 20 19 18 22 22 C 1.39018 * 119.09841 * 359.97438 * 21 20 19 23 23 N 1.37190 * 134.65503 * 179.97438 * 22 21 20 24 24 H 0.97000 * 125.06129 * 0.02562 * 23 22 21 25 25 C 1.36715 * 109.87609 * 180.02562 * 23 22 21 26 26 C 1.34560 * 109.96099 * 359.97438 * 25 23 22 27 27 C 1.40403 * 120.05727 * 179.72089 * 18 16 15 28 28 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 29 29 C 1.52907 * 121.14350 * 94.90830 * 28 10 9 30 30 C 1.53946 * 86.78434 * 209.37620 * 29 28 10 31 31 C 1.52906 * 121.13637 * 346.33941 * 28 10 9 32 32 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 35 35 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 36 36 H 0.96995 * 120.00166 * 284.50795 * 15 13 12 37 37 H 1.07993 * 119.15570 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.44784 * 179.97438 * 21 20 19 39 39 H 1.08010 * 125.01849 * 179.97438 * 25 23 22 40 40 H 1.08002 * 126.50528 * 180.02562 * 26 25 23 41 41 H 1.09001 * 113.66043 * 323.84687 * 29 28 10 42 42 H 1.09000 * 113.66310 * 94.90448 * 29 28 10 43 43 H 1.09000 * 113.58131 * 270.13296 * 30 29 28 44 44 H 1.08999 * 113.65580 * 139.34498 * 30 29 28 45 45 H 1.08996 * 113.66552 * 265.09839 * 31 28 10 46 46 H 1.09001 * 113.66060 * 36.16135 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0461 -3.5739 -0.4578 12 6 2.0606 -4.3748 1.3567 13 6 1.8529 -5.6889 0.5821 14 1 1.1439 -6.3683 1.0554 15 7 3.1030 -6.3469 0.1944 16 6 3.5255 -7.4383 0.8630 17 8 2.8690 -7.8769 1.7873 18 6 4.7863 -8.1023 0.4716 19 7 5.5038 -7.6246 -0.5379 20 6 6.6334 -8.1836 -0.9208 21 6 7.1387 -9.3061 -0.2904 22 6 6.4359 -9.8572 0.7750 23 7 6.6309 -10.9308 1.6065 24 1 7.3861 -11.5381 1.5646 25 6 5.6023 -11.0172 2.5030 26 6 4.7218 -10.0224 2.2892 27 6 5.2305 -9.2359 1.1709 28 6 1.2379 -4.8365 -0.5285 29 6 1.3191 -5.2681 -1.9932 30 6 -0.1336 -5.7541 -1.8403 31 6 -0.2782 -4.7324 -0.6977 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 3.0175 -4.3214 1.8759 35 1 1.2183 -4.1048 1.9936 36 1 3.6267 -5.9971 -0.5433 37 1 7.1787 -7.7545 -1.7483 38 1 8.0668 -9.7485 -0.6212 39 1 5.5101 -11.7725 3.2696 40 1 3.8130 -9.8387 2.8431 41 1 1.4312 -4.4364 -2.6887 42 1 2.0327 -6.0721 -2.1735 43 1 -0.2145 -6.7902 -1.5116 44 1 -0.7615 -5.5343 -2.7038 45 1 -0.8406 -5.1085 0.1569 46 1 -0.6149 -3.7502 -1.0292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078731948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:41 Heat of formation + Delta-G solvation = 97.250992 kcal Electronic energy + Delta-G solvation = -29058.589077 eV Core-core repulsion = 25143.612514 eV Total energy + Delta-G solvation = -3914.976563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -41.88233 -40.51554 -38.97116 -37.92658 -34.97022 -33.98646 -32.63880 -32.05385 -30.87427 -29.86849 -29.25456 -25.45927 -25.30030 -24.35788 -23.88786 -22.83072 -22.35306 -21.28527 -20.75335 -20.04795 -18.81730 -17.86874 -17.49378 -17.04427 -16.29696 -15.71053 -15.46766 -15.37937 -15.16730 -14.85383 -14.70190 -14.39865 -14.35943 -13.75882 -13.47342 -13.29303 -13.15410 -12.92309 -12.60745 -12.36107 -12.02018 -11.97261 -11.74274 -11.57569 -11.28965 -10.89466 -10.76416 -10.60577 -10.22026 -10.21171 -10.11142 -10.03585 -9.74553 -9.70773 -9.54970 -9.27757 -9.15486 -8.76506 -8.63431 -8.17142 -6.89228 -5.74144 -3.01768 0.27055 1.20621 2.34583 2.62637 2.80499 3.19137 3.45730 3.51861 3.53778 3.84862 4.09749 4.32608 4.47637 4.62497 4.66878 4.84695 4.87784 5.03977 5.07227 5.13668 5.16850 5.30312 5.31478 5.35492 5.52583 5.66943 5.71086 5.73748 5.92547 6.00139 6.11324 6.15378 6.18199 6.21838 6.28781 6.30577 6.35705 6.46124 6.51243 6.55773 6.63881 6.75911 6.86027 7.02990 7.03421 7.15837 7.55953 7.75256 7.85752 8.36863 8.45186 9.56592 10.15230 10.50297 11.48467 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002628 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.439848 B =10653.060390 C =11281.357345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.709 5.709 10 C 0.180 3.820 11 H 0.074 0.926 12 C -0.174 4.174 13 C 0.142 3.858 14 H 0.096 0.904 15 N -0.682 5.682 16 C 0.572 3.428 17 O -0.532 6.532 18 C 0.140 3.860 19 N -0.471 5.471 20 C 0.101 3.899 21 C -0.162 4.162 22 C 0.118 3.882 23 N -0.590 5.590 24 H 0.419 0.581 25 C 0.045 3.955 26 C -0.166 4.166 27 C -0.111 4.111 28 C -0.123 4.123 29 C -0.123 4.123 30 C -0.140 4.140 31 C -0.104 4.104 32 H 0.254 0.746 33 H 0.387 0.613 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.411 0.589 37 H 0.165 0.835 38 H 0.135 0.865 39 H 0.178 0.822 40 H 0.163 0.837 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.759 -25.096 -0.436 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.068 3.932 11 H 0.092 0.908 12 C -0.216 4.216 13 C 0.036 3.964 14 H 0.114 0.886 15 N -0.332 5.332 16 C 0.356 3.644 17 O -0.408 6.408 18 C -0.005 4.005 19 N -0.184 5.184 20 C -0.053 4.053 21 C -0.185 4.185 22 C 0.003 3.997 23 N -0.194 5.194 24 H 0.256 0.744 25 C -0.080 4.080 26 C -0.191 4.191 27 C -0.119 4.119 28 C -0.125 4.125 29 C -0.161 4.161 30 C -0.178 4.178 31 C -0.142 4.142 32 H 0.064 0.936 33 H 0.222 0.778 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.248 0.752 37 H 0.182 0.818 38 H 0.153 0.847 39 H 0.195 0.805 40 H 0.181 0.819 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.191 -24.564 -0.221 27.423 hybrid contribution 1.264 0.029 0.130 1.271 sum 13.455 -24.535 -0.091 27.982 Atomic orbital electron populations 1.69668 1.05074 1.25517 1.57850 1.24737 0.95505 0.97667 1.03054 0.86137 0.78838 0.84236 0.77117 1.20567 1.21945 1.21941 1.19345 0.91098 0.84212 1.42343 0.91123 1.42380 1.05864 0.99633 1.86868 1.21400 0.94525 0.84930 0.92387 0.90781 1.24280 1.01812 0.95024 1.00471 1.21551 0.85131 0.93417 0.96252 0.88617 1.45470 1.24244 1.27993 1.35499 1.17687 0.83846 0.80404 0.82456 1.90751 1.56028 1.65004 1.29022 1.20720 0.94951 0.92506 0.92332 1.67585 1.06946 1.30803 1.13079 1.22380 0.91994 0.92182 0.98735 1.21191 1.01678 0.99205 0.96469 1.18273 0.96488 0.90411 0.94522 1.41648 1.23212 1.25812 1.28715 0.74406 1.22109 0.88762 1.01409 0.95749 1.21973 1.01982 0.95812 0.99367 1.19851 0.95753 0.97194 0.99131 1.23375 0.97540 0.97777 0.93852 1.22641 0.96526 1.00450 0.96483 1.22827 0.97252 0.98701 0.98978 1.22467 0.93580 1.00129 0.98027 0.93585 0.77821 0.92311 0.89530 0.75250 0.81783 0.84716 0.80531 0.81915 0.89622 0.92078 0.90996 0.91931 0.91824 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.61 9.98 -15.06 -0.15 -6.76 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.58 5.34 -52.99 -0.28 -17.86 16 10 C 0.18 3.60 4.28 -67.48 -0.29 3.31 16 11 H 0.07 1.50 8.12 -51.93 -0.42 1.08 16 12 C -0.17 -3.26 7.68 -25.75 -0.20 -3.45 16 13 C 0.14 2.33 4.08 -67.48 -0.28 2.06 16 14 H 0.10 1.63 7.54 -51.93 -0.39 1.24 16 15 N -0.68 -10.39 4.85 -54.33 -0.26 -10.66 16 16 C 0.57 9.09 7.80 -12.36 -0.10 9.00 16 17 O -0.53 -9.52 14.79 5.31 0.08 -9.45 16 18 C 0.14 1.97 6.78 -82.76 -0.56 1.41 16 19 N -0.47 -5.96 9.54 -9.66 -0.09 -6.06 16 20 C 0.10 0.95 11.13 -17.57 -0.20 0.76 16 21 C -0.16 -1.32 10.14 -39.27 -0.40 -1.72 16 22 C 0.12 1.15 7.34 -84.03 -0.62 0.53 16 23 N -0.59 -3.94 6.04 -10.59 -0.06 -4.00 16 24 H 0.42 1.28 8.96 -40.82 -0.37 0.91 16 25 C 0.04 0.32 11.82 -16.68 -0.20 0.13 16 26 C -0.17 -1.84 10.25 -37.83 -0.39 -2.22 16 27 C -0.11 -1.41 6.15 -104.88 -0.65 -2.05 16 28 C -0.12 -2.06 0.91 -154.71 -0.14 -2.20 16 29 C -0.12 -1.86 7.59 -26.29 -0.20 -2.06 16 30 C -0.14 -1.99 8.08 -25.75 -0.21 -2.20 16 31 C -0.10 -1.71 7.16 -26.28 -0.19 -1.90 16 32 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.39 10.07 6.12 -40.82 -0.25 9.82 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.41 5.92 7.61 -40.82 -0.31 5.61 16 37 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.18 0.59 8.06 -52.48 -0.42 0.16 16 40 H 0.16 1.92 7.23 -52.49 -0.38 1.54 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.06 0.85 7.50 -51.93 -0.39 0.46 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.10 1.82 6.96 -51.93 -0.36 1.45 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -33.80 380.40 -10.26 -44.05 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -6.22 Total: 15.93 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.84 Total: -7.86 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.02 Total: -65.90 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.80 -10.26 -44.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078731948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.305 kcal (2) G-P(sol) polarization free energy of solvation -33.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds