Wall clock time and date at job start Sat Apr 11 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09002 * 113.66394 * 220.79902 * 13 12 10 15 15 N 1.46499 * 113.66265 * 89.73701 * 13 12 10 16 16 C 1.34778 * 119.99554 * 104.50571 * 15 13 12 17 17 O 1.21569 * 120.00184 * 0.02562 * 16 15 13 18 18 C 1.47768 * 119.99819 * 179.97438 * 16 15 13 19 19 N 1.32743 * 120.05615 * 0.02562 * 18 16 15 20 20 C 1.31725 * 122.13404 * 179.97438 * 19 18 16 21 21 C 1.38308 * 121.68357 * 0.02562 * 20 19 18 22 22 C 1.39018 * 119.09841 * 359.97438 * 21 20 19 23 23 N 1.37190 * 134.65503 * 179.97438 * 22 21 20 24 24 H 0.97000 * 125.06129 * 0.02562 * 23 22 21 25 25 C 1.36715 * 109.87609 * 180.02562 * 23 22 21 26 26 C 1.34560 * 109.96099 * 359.97438 * 25 23 22 27 27 C 1.40403 * 120.05727 * 179.72089 * 18 16 15 28 28 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 29 29 C 1.52907 * 121.14350 * 94.90830 * 28 10 9 30 30 C 1.53946 * 86.78434 * 209.37620 * 29 28 10 31 31 C 1.52906 * 121.13637 * 346.33941 * 28 10 9 32 32 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 35 35 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 36 36 H 0.96995 * 120.00166 * 284.50795 * 15 13 12 37 37 H 1.07993 * 119.15570 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.44784 * 179.97438 * 21 20 19 39 39 H 1.08010 * 125.01849 * 179.97438 * 25 23 22 40 40 H 1.08002 * 126.50528 * 180.02562 * 26 25 23 41 41 H 1.09001 * 113.66043 * 323.84687 * 29 28 10 42 42 H 1.09000 * 113.66310 * 94.90448 * 29 28 10 43 43 H 1.09000 * 113.58131 * 270.13296 * 30 29 28 44 44 H 1.08999 * 113.65580 * 139.34498 * 30 29 28 45 45 H 1.08996 * 113.66552 * 265.09839 * 31 28 10 46 46 H 1.09001 * 113.66060 * 36.16135 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0461 -3.5739 -0.4578 12 6 2.0606 -4.3748 1.3567 13 6 1.8529 -5.6889 0.5821 14 1 1.1439 -6.3683 1.0554 15 7 3.1030 -6.3469 0.1944 16 6 3.5255 -7.4383 0.8630 17 8 2.8690 -7.8769 1.7873 18 6 4.7863 -8.1023 0.4716 19 7 5.5038 -7.6246 -0.5379 20 6 6.6334 -8.1836 -0.9208 21 6 7.1387 -9.3061 -0.2904 22 6 6.4359 -9.8572 0.7750 23 7 6.6309 -10.9308 1.6065 24 1 7.3861 -11.5381 1.5646 25 6 5.6023 -11.0172 2.5030 26 6 4.7218 -10.0224 2.2892 27 6 5.2305 -9.2359 1.1709 28 6 1.2379 -4.8365 -0.5285 29 6 1.3191 -5.2681 -1.9932 30 6 -0.1336 -5.7541 -1.8403 31 6 -0.2782 -4.7324 -0.6977 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 3.0175 -4.3214 1.8759 35 1 1.2183 -4.1048 1.9936 36 1 3.6267 -5.9971 -0.5433 37 1 7.1787 -7.7545 -1.7483 38 1 8.0668 -9.7485 -0.6212 39 1 5.5101 -11.7725 3.2696 40 1 3.8130 -9.8387 2.8431 41 1 1.4312 -4.4364 -2.6887 42 1 2.0327 -6.0721 -2.1735 43 1 -0.2145 -6.7902 -1.5116 44 1 -0.7615 -5.5343 -2.7038 45 1 -0.8406 -5.1085 0.1569 46 1 -0.6149 -3.7502 -1.0292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078731948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:35 Heat of formation + Delta-G solvation = 74.359637 kcal Electronic energy + Delta-G solvation = -29059.581720 eV Core-core repulsion = 25143.612514 eV Total energy + Delta-G solvation = -3915.969207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 10.34 seconds Orbital eigenvalues (eV) -42.62228 -41.88550 -40.09112 -38.80886 -36.44485 -35.71192 -33.93535 -33.16355 -31.79361 -31.47116 -30.13376 -26.80565 -26.72460 -25.76163 -25.30227 -23.88673 -23.52476 -22.38772 -21.71853 -21.31375 -19.80528 -19.36748 -18.79070 -18.45115 -17.24587 -16.96198 -16.77258 -16.41792 -16.21801 -16.16871 -15.76016 -15.64073 -15.45525 -15.29090 -14.97503 -14.28328 -14.09515 -13.89098 -13.82405 -13.77439 -13.40521 -13.31282 -13.17413 -12.85660 -12.76591 -12.72749 -12.57541 -12.11905 -11.99779 -11.82064 -11.32955 -11.31078 -11.12002 -10.96300 -10.84441 -10.64574 -10.61121 -9.98485 -9.87978 -8.94183 -8.87071 -7.92565 -5.19938 -0.54868 0.46445 1.47794 1.48393 1.58404 1.58858 1.81603 1.97479 2.11276 2.57594 2.95513 3.19755 3.38124 3.44618 3.59761 3.68051 3.78049 3.85713 3.94939 3.99922 4.04125 4.15306 4.16442 4.30529 4.42750 4.52923 4.56887 4.61831 4.64599 4.73472 4.83769 4.92076 4.97070 5.00384 5.05247 5.08536 5.12167 5.13074 5.26291 5.45991 5.49699 5.52595 5.58721 5.65216 5.66446 5.86309 6.29949 6.46733 6.58975 6.91491 7.18744 7.36701 8.13434 8.38357 9.30856 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015749 B = 0.002628 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.439848 B =10653.060390 C =11281.357345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.073 0.927 9 N -0.720 5.720 10 C 0.169 3.831 11 H 0.072 0.928 12 C -0.171 4.171 13 C 0.161 3.839 14 H 0.093 0.907 15 N -0.679 5.679 16 C 0.569 3.431 17 O -0.562 6.562 18 C 0.097 3.903 19 N -0.485 5.485 20 C 0.082 3.918 21 C -0.135 4.135 22 C 0.105 3.895 23 N -0.572 5.572 24 H 0.440 0.560 25 C 0.089 3.911 26 C -0.223 4.223 27 C -0.133 4.133 28 C -0.114 4.114 29 C -0.117 4.117 30 C -0.124 4.124 31 C -0.110 4.110 32 H 0.250 0.750 33 H 0.378 0.622 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.196 0.804 38 H 0.178 0.822 39 H 0.223 0.777 40 H 0.142 0.858 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.763 -27.909 -1.216 32.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.090 0.910 12 C -0.213 4.213 13 C 0.055 3.945 14 H 0.111 0.889 15 N -0.328 5.328 16 C 0.356 3.644 17 O -0.440 6.440 18 C -0.046 4.046 19 N -0.198 5.198 20 C -0.073 4.073 21 C -0.157 4.157 22 C -0.010 4.010 23 N -0.177 5.177 24 H 0.282 0.718 25 C -0.038 4.038 26 C -0.248 4.248 27 C -0.142 4.142 28 C -0.116 4.116 29 C -0.155 4.155 30 C -0.161 4.161 31 C -0.148 4.148 32 H 0.059 0.941 33 H 0.211 0.789 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.253 0.747 37 H 0.212 0.788 38 H 0.196 0.804 39 H 0.239 0.761 40 H 0.160 0.840 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.261 -27.429 -1.017 31.406 hybrid contribution 0.476 0.735 0.427 0.975 sum 15.737 -26.694 -0.590 30.993 Atomic orbital electron populations 1.69818 1.06482 1.25874 1.59707 1.25509 0.96359 1.00879 1.03929 0.85118 0.78248 0.80114 0.76568 1.19197 1.21975 1.22317 1.19697 0.91412 0.85401 1.40660 0.90881 1.42509 1.05593 1.00525 1.87174 1.21620 0.94738 0.84234 0.93575 0.90976 1.24141 1.00944 0.96584 0.99644 1.21229 0.85715 0.92282 0.95294 0.88877 1.45380 1.23766 1.27997 1.35677 1.18128 0.84475 0.80037 0.81773 1.90717 1.57220 1.65814 1.30269 1.20379 0.95173 0.94311 0.94748 1.67484 1.08083 1.31501 1.12765 1.22987 0.91422 0.92998 0.99850 1.21641 1.02103 0.97623 0.94371 1.18483 0.95803 0.91238 0.95493 1.41674 1.23542 1.25046 1.27455 0.71806 1.22678 0.86680 0.99782 0.94686 1.21957 1.03422 0.98514 1.00948 1.20171 0.97239 0.97167 0.99586 1.23244 0.97415 0.95667 0.95311 1.22599 0.97784 1.00576 0.94515 1.22765 0.96480 0.98614 0.98240 1.22447 0.93190 0.99783 0.99421 0.94078 0.78852 0.92928 0.90843 0.74729 0.78761 0.80422 0.76101 0.84007 0.90518 0.90479 0.89486 0.90604 0.91335 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.07 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 7 C -0.24 -13.56 9.98 84.03 0.84 -12.72 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.72 -36.94 5.34 -321.55 -1.72 -38.66 16 10 C 0.17 6.96 4.28 45.28 0.19 7.16 16 11 H 0.07 2.99 8.12 -2.38 -0.02 2.97 16 12 C -0.17 -6.69 7.68 31.23 0.24 -6.45 16 13 C 0.16 5.43 4.08 45.28 0.18 5.62 16 14 H 0.09 3.25 7.54 -2.39 -0.02 3.24 16 15 N -0.68 -21.21 4.85 -444.08 -2.16 -23.36 16 16 C 0.57 18.89 7.80 86.76 0.68 19.57 16 17 O -0.56 -21.27 14.79 -3.93 -0.06 -21.33 16 18 C 0.10 2.79 6.78 42.06 0.29 3.08 16 19 N -0.49 -12.01 9.54 -184.49 -1.76 -13.77 16 20 C 0.08 1.35 11.13 84.73 0.94 2.30 16 21 C -0.13 -1.71 10.14 22.47 0.23 -1.48 16 22 C 0.11 1.77 7.34 39.24 0.29 2.06 16 23 N -0.57 -5.43 6.04 -187.43 -1.13 -6.57 16 24 H 0.44 0.49 8.96 -92.71 -0.83 -0.34 16 25 C 0.09 1.02 11.82 83.09 0.98 2.00 16 26 C -0.22 -4.92 10.25 23.41 0.24 -4.68 16 27 C -0.13 -3.34 6.15 -20.03 -0.12 -3.46 16 28 C -0.11 -3.88 0.91 -52.31 -0.05 -3.93 16 29 C -0.12 -3.45 7.59 30.88 0.23 -3.22 16 30 C -0.12 -3.37 8.08 31.23 0.25 -3.11 16 31 C -0.11 -3.69 7.16 30.89 0.22 -3.47 16 32 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.38 20.56 6.12 -92.71 -0.57 19.99 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 36 H 0.42 12.16 7.61 -92.71 -0.71 11.45 16 37 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.22 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.14 3.62 7.23 -2.91 -0.02 3.60 16 41 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.08 2.03 7.50 -2.39 -0.02 2.02 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.07 2.82 6.96 -2.39 -0.02 2.80 16 Total: -1.00 -77.50 380.40 0.53 -76.96 By element: Atomic # 1 Polarization: 42.92 SS G_CDS: -1.06 Total: 41.86 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 6.10 Total: -4.62 kcal Atomic # 7 Polarization: -135.45 SS G_CDS: -6.48 Total: -141.93 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -77.50 0.53 -76.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078731948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.323 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.34 seconds