Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38898 * 119.73968 * 2 1 4 4 C 1.36681 * 120.89501 * 180.02562 * 3 2 1 5 5 C 1.39113 * 119.78523 * 359.97438 * 4 3 2 6 6 N 1.37055 * 134.72641 * 179.97438 * 5 4 3 7 7 H 0.97001 * 124.37253 * 0.04430 * 6 5 4 8 8 N 1.28380 * 111.25625 * 179.97438 * 6 5 4 9 9 C 1.31575 * 111.96979 * 0.02562 * 8 6 5 10 10 C 1.47390 * 126.82487 * 179.97438 * 9 8 6 11 11 O 1.21617 * 119.99710 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00053 * 0.02598 * 10 9 8 13 13 C 1.47810 * 135.01366 * 359.97438 * 12 10 9 14 14 C 1.54652 * 85.79126 * 153.77664 * 13 12 10 15 15 H 1.08997 * 114.44530 * 140.43252 * 14 13 12 16 16 C 1.53016 * 110.83639 * 270.23144 * 14 13 12 17 17 C 1.53105 * 109.44711 * 143.88620 * 16 14 13 18 18 N 1.46621 * 108.01007 * 301.03101 * 17 16 14 19 19 C 1.36942 * 119.88844 * 237.32622 * 18 17 16 20 20 H 1.08001 * 120.00064 * 24.86836 * 19 18 17 21 21 C 1.38805 * 119.99944 * 204.86641 * 19 18 17 22 22 N 1.31617 * 120.00144 * 14.86003 * 21 19 18 23 23 Si 1.86799 * 120.00028 * 194.85809 * 21 19 18 24 24 H 1.48500 * 109.47286 * 94.96588 * 23 21 19 25 25 H 1.48496 * 109.47366 * 214.96758 * 23 21 19 26 26 H 1.48505 * 109.47335 * 334.96816 * 23 21 19 27 27 C 1.45317 * 119.57364 * 58.79856 * 18 17 16 28 28 C 1.48758 * 135.02858 * 179.85523 * 12 10 9 29 29 H 1.08992 * 111.45527 * 94.81644 * 28 12 10 30 30 C 1.40869 * 119.22907 * 0.26043 * 5 4 3 31 31 C 1.36717 * 119.73835 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46693 * 89.99973 * 1 2 3 33 33 H 1.08998 * 109.46525 * 209.99786 * 1 2 3 34 34 H 1.08991 * 109.46797 * 329.99847 * 1 2 3 35 35 H 1.08008 * 119.55112 * 0.02562 * 3 2 1 36 36 H 1.08008 * 120.10542 * 180.02562 * 4 3 2 37 37 H 1.09001 * 113.81888 * 39.56189 * 13 12 10 38 38 H 1.08993 * 113.82481 * 267.99768 * 13 12 10 39 39 H 1.09005 * 109.47365 * 23.89734 * 16 14 13 40 40 H 1.08993 * 109.48083 * 263.88247 * 16 14 13 41 41 H 1.08999 * 109.75276 * 60.65501 * 17 16 14 42 42 H 1.09004 * 109.75537 * 181.39927 * 17 16 14 43 43 H 0.96998 * 120.00495 * 180.02562 * 22 21 19 44 44 H 1.08996 * 107.70450 * 198.51424 * 27 18 17 45 45 H 1.09006 * 109.96065 * 80.38036 * 27 18 17 46 46 H 1.08000 * 120.24569 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.2060 0.0000 4 6 3.5626 1.2336 -0.0005 5 6 4.2779 0.0404 -0.0005 6 7 5.6090 -0.2862 -0.0014 7 1 6.3316 0.3609 -0.0016 8 7 5.7759 -1.5591 -0.0004 9 6 4.6300 -2.2058 0.0006 10 6 4.4406 -3.6675 0.0014 11 8 3.3179 -4.1351 0.0018 12 7 5.5114 -4.4857 0.0016 13 6 6.9765 -4.2902 0.0007 14 6 7.0474 -5.6761 0.6834 15 1 7.8675 -6.3066 0.3401 16 6 6.9836 -5.5368 2.2059 17 6 6.1896 -6.7073 2.7920 18 7 4.8466 -6.6838 2.2041 19 6 3.7472 -6.6044 3.0167 20 1 3.8335 -6.1679 4.0008 21 6 2.5220 -7.0849 2.5755 22 7 2.4641 -7.8696 1.5204 23 14 0.9553 -6.6180 3.4793 24 1 0.3335 -5.4430 2.8175 25 1 0.0079 -7.7611 3.4507 26 1 1.2791 -6.2786 4.8883 27 6 4.6933 -6.7775 0.7621 28 6 5.7093 -5.9601 0.0049 29 1 5.8450 -6.3464 -1.0051 30 6 3.5772 -1.1816 -0.0056 31 6 2.1853 -1.1871 -0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3632 -0.8900 0.5138 34 1 -0.3632 0.8899 0.5138 35 1 1.6445 2.1347 0.0004 36 1 4.0855 2.1787 -0.0001 37 1 7.3115 -3.4694 0.6350 38 1 7.4171 -4.2674 -0.9959 39 1 6.4924 -4.5987 2.4647 40 1 7.9941 -5.5425 2.6141 41 1 6.6832 -7.6474 2.5456 42 1 6.1198 -6.5998 3.8745 43 1 1.6079 -8.2051 1.2118 44 1 3.6962 -6.4162 0.5106 45 1 4.7756 -7.8175 0.4459 46 1 1.6450 -2.1223 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084482115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 95.593764 kcal Electronic energy + Delta-G solvation = -30346.696915 eV Core-core repulsion = 26431.648490 eV Total energy + Delta-G solvation = -3915.048426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.50984 -41.57812 -39.13844 -39.03885 -37.01055 -34.04482 -33.71184 -32.83953 -31.95042 -31.36090 -30.17050 -28.61673 -27.83406 -25.72881 -25.29276 -24.21344 -23.63375 -22.60323 -22.54161 -20.86637 -19.58822 -19.19474 -18.67053 -17.78007 -17.36894 -17.06508 -16.93741 -16.67742 -16.22462 -16.07280 -15.59619 -15.10710 -15.02520 -14.93627 -14.77046 -14.50918 -14.45105 -14.24303 -13.96992 -13.53605 -13.17263 -13.09014 -12.87428 -12.76601 -12.71057 -12.59435 -12.44631 -12.21073 -12.16597 -12.01533 -11.94929 -11.74453 -11.47744 -11.26331 -11.17745 -10.75352 -10.41782 -9.70981 -9.58078 -9.00991 -8.69769 -7.85368 -5.27686 -0.24723 0.30486 0.86787 1.33602 1.42258 1.45393 1.63247 1.93775 2.30243 2.48099 2.72148 3.12313 3.30523 3.44407 3.47432 3.62188 3.73505 3.92732 3.96766 4.08925 4.19611 4.25340 4.40026 4.44161 4.49885 4.55195 4.62507 4.69753 4.74757 4.75098 4.82205 4.89318 4.93819 4.99524 5.06410 5.12432 5.17478 5.18790 5.31589 5.34453 5.42342 5.56364 5.62434 5.70443 5.81058 5.83105 6.11089 6.40283 6.68948 6.86350 7.19166 7.25012 7.95988 8.35370 9.19245 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010167 B = 0.004777 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2753.384323 B = 5860.025515 C = 7909.396590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.081 4.081 4 C -0.099 4.099 5 C 0.055 3.945 6 N -0.392 5.392 7 H 0.466 0.534 8 N -0.191 5.191 9 C -0.023 4.023 10 C 0.606 3.394 11 O -0.574 6.574 12 N -0.627 5.627 13 C 0.119 3.881 14 C -0.097 4.097 15 H 0.131 0.869 16 C -0.105 4.105 17 C 0.137 3.863 18 N -0.601 5.601 19 C -0.256 4.256 20 H 0.061 0.939 21 C -0.044 4.044 22 N -0.931 5.931 23 Si 0.952 3.048 24 H -0.303 1.303 25 H -0.286 1.286 26 H -0.264 1.264 27 C 0.178 3.822 28 C 0.114 3.886 29 H 0.096 0.904 30 C -0.137 4.137 31 C -0.089 4.089 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.034 0.966 40 H 0.100 0.900 41 H 0.032 0.968 42 H 0.051 0.949 43 H 0.245 0.755 44 H 0.055 0.945 45 H 0.003 0.997 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.604 21.863 -5.714 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.101 4.101 4 C -0.119 4.119 5 C -0.058 4.058 6 N -0.115 5.115 7 H 0.316 0.684 8 N -0.023 5.023 9 C -0.192 4.192 10 C 0.394 3.606 11 O -0.452 6.452 12 N -0.362 5.362 13 C -0.002 4.002 14 C -0.116 4.116 15 H 0.149 0.851 16 C -0.144 4.144 17 C 0.012 3.988 18 N -0.324 5.324 19 C -0.386 4.386 20 H 0.078 0.922 21 C -0.240 4.240 22 N -0.578 5.578 23 Si 0.781 3.219 24 H -0.231 1.231 25 H -0.212 1.212 26 H -0.188 1.188 27 C 0.051 3.949 28 C 0.011 3.989 29 H 0.114 0.886 30 C -0.145 4.145 31 C -0.109 4.109 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.192 0.808 36 H 0.194 0.806 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.053 0.947 40 H 0.119 0.881 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.021 0.979 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.869 21.475 -5.760 24.748 hybrid contribution -1.963 -0.270 0.274 2.000 sum 8.906 21.205 -5.487 23.645 Atomic orbital electron populations 1.20838 0.89307 1.03455 1.03254 1.19929 0.97711 0.92235 1.00338 1.21085 0.93464 0.98120 0.97438 1.20284 0.93776 0.95083 1.02798 1.19394 0.84997 0.95767 1.05690 1.43065 1.06341 1.03681 1.58440 0.68412 1.72801 1.24715 0.92334 1.12461 1.22597 0.89711 0.93387 1.13491 1.16715 0.83539 0.83577 0.76740 1.90831 1.25137 1.76499 1.52717 1.50334 1.06864 1.08068 1.70921 1.23719 0.76991 0.97735 1.01752 1.22867 0.95810 0.97134 0.95794 0.85092 1.21725 1.00641 0.98133 0.93852 1.21015 0.85172 0.96221 0.96417 1.43663 1.01732 1.85605 1.01399 1.19383 0.88708 1.31706 0.98793 0.92170 1.25576 1.01031 0.97977 0.99378 1.70155 1.23891 1.35535 1.28198 0.85468 0.80858 0.76821 0.78731 1.23066 1.21189 1.18790 1.19648 0.97789 0.94258 0.83164 1.23115 0.95908 0.80147 0.99717 0.88633 1.19683 0.94643 0.92059 1.08084 1.20239 0.91817 0.98822 1.00036 0.90028 0.93224 0.88539 0.80806 0.80604 0.89003 0.87210 0.94674 0.88117 0.94976 0.93064 0.94619 0.92684 0.97902 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.99 71.24 0.71 -1.54 16 2 C -0.10 -2.54 5.85 -20.06 -0.12 -2.66 16 3 C -0.08 -1.39 9.60 22.06 0.21 -1.17 16 4 C -0.10 -1.62 10.03 22.12 0.22 -1.40 16 5 C 0.05 1.34 7.38 39.18 0.29 1.63 16 6 N -0.39 -8.23 6.85 -51.60 -0.35 -8.58 16 7 H 0.47 4.91 8.96 -220.04 -1.97 2.94 16 8 N -0.19 -5.56 10.57 -44.88 -0.47 -6.04 16 9 C -0.02 -0.87 7.28 43.86 0.32 -0.55 16 10 C 0.61 28.35 8.00 86.65 0.69 29.04 16 11 O -0.57 -33.18 15.68 -4.09 -0.06 -33.24 16 12 N -0.63 -25.00 3.40 -818.62 -2.78 -27.78 16 13 C 0.12 3.21 7.32 86.62 0.63 3.84 16 14 C -0.10 -2.83 4.34 -10.31 -0.04 -2.88 16 15 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 16 C -0.10 -3.40 5.66 30.63 0.17 -3.22 16 17 C 0.14 5.75 6.44 86.39 0.56 6.30 16 18 N -0.60 -32.64 3.00 -708.66 -2.13 -34.76 16 19 C -0.26 -15.62 9.56 84.03 0.80 -14.82 16 20 H 0.06 3.62 7.84 -2.91 -0.02 3.60 16 21 C -0.04 -2.78 4.96 84.86 0.42 -2.36 16 22 N -0.93 -61.01 10.92 21.65 0.24 -60.77 16 23 Si 0.95 51.27 29.58 68.60 2.03 53.30 16 24 H -0.30 -16.98 7.11 99.48 0.71 -16.27 16 25 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 26 H -0.26 -13.25 7.11 99.48 0.71 -12.54 16 27 C 0.18 9.55 4.68 85.88 0.40 9.95 16 28 C 0.11 4.59 4.31 43.66 0.19 4.77 16 29 H 0.10 3.41 8.14 -2.39 -0.02 3.39 16 30 C -0.14 -4.88 6.34 -20.14 -0.13 -5.01 16 31 C -0.09 -3.16 9.50 22.14 0.21 -2.95 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.19 8.08 -2.39 -0.02 1.17 16 34 H 0.10 1.33 8.08 -2.39 -0.02 1.31 16 35 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 37 H 0.09 2.32 7.33 -2.39 -0.02 2.30 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.03 1.33 7.69 -2.38 -0.02 1.31 16 40 H 0.10 2.39 8.14 -2.39 -0.02 2.38 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.05 2.15 7.88 -2.38 -0.02 2.13 16 43 H 0.24 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.05 3.55 4.89 -2.39 -0.01 3.54 16 45 H 0.00 0.19 8.03 -2.38 -0.02 0.17 16 46 H 0.10 4.13 7.65 -2.91 -0.02 4.11 16 Total: -1.00 -91.41 372.29 1.05 -90.35 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -0.96 Total: 10.54 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 5.55 Total: 16.99 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -5.50 Total: -137.94 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.06 Total: -33.24 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.03 Total: 53.30 kcal Total: -91.41 1.05 -90.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084482115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.947 kcal (2) G-P(sol) polarization free energy of solvation -91.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds