Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35829 * 118.69734 * 2 1 4 4 C 1.40844 * 120.55514 * 179.97438 * 3 2 1 5 5 C 1.38428 * 134.89855 * 179.97438 * 4 3 2 6 6 N 1.33886 * 107.84230 * 180.02562 * 5 4 3 7 7 H 0.96998 * 125.01985 * 180.02562 * 6 5 4 8 8 N 1.39980 * 109.96728 * 0.02562 * 6 5 4 9 9 C 1.31482 * 109.01319 * 0.02562 * 8 6 5 10 10 C 1.46668 * 134.99263 * 180.02562 * 9 8 6 11 11 C 1.47165 * 120.72263 * 359.97438 * 10 9 8 12 12 O 1.21648 * 120.00618 * 20.82284 * 11 10 9 13 13 N 1.34776 * 120.00203 * 200.82467 * 11 10 9 14 14 C 1.47808 * 135.00802 * 355.53832 * 13 11 10 15 15 C 1.54649 * 85.79475 * 153.78231 * 14 13 11 16 16 H 1.08999 * 115.01947 * 139.91075 * 15 14 13 17 17 C 1.53008 * 110.83825 * 270.22745 * 15 14 13 18 18 C 1.53104 * 109.44938 * 143.89064 * 17 15 14 19 19 N 1.46624 * 108.00650 * 301.02553 * 18 17 15 20 20 C 1.36938 * 119.89108 * 237.30149 * 19 18 17 21 21 H 1.07999 * 120.00187 * 152.33149 * 20 19 18 22 22 C 1.38813 * 119.99716 * 332.33634 * 20 19 18 23 23 N 1.31626 * 119.99740 * 335.29927 * 22 20 19 24 24 Si 1.86794 * 120.00130 * 155.30486 * 22 20 19 25 25 H 1.48498 * 109.47433 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.46888 * 59.99692 * 24 22 20 27 27 H 1.48497 * 109.47260 * 299.99704 * 24 22 20 28 28 C 1.45681 * 120.21669 * 57.57729 * 19 18 17 29 29 C 1.46817 * 135.01851 * 175.50144 * 13 11 10 30 30 H 1.08996 * 111.56345 * 94.50361 * 29 13 11 31 31 C 1.38589 * 118.55091 * 180.24775 * 10 9 8 32 32 H 1.09006 * 109.46644 * 90.00089 * 1 2 3 33 33 H 1.08994 * 109.46607 * 209.99945 * 1 2 3 34 34 H 1.08993 * 109.47108 * 330.00210 * 1 2 3 35 35 H 1.07998 * 119.72487 * 0.02562 * 3 2 1 36 36 H 1.07996 * 126.07433 * 0.02562 * 5 4 3 37 37 H 1.09000 * 113.82466 * 39.55940 * 14 13 11 38 38 H 1.09006 * 113.81854 * 267.99989 * 14 13 11 39 39 H 1.09000 * 109.47414 * 23.89924 * 17 15 14 40 40 H 1.09003 * 109.47690 * 263.88465 * 17 15 14 41 41 H 1.08996 * 109.75606 * 181.39682 * 18 17 15 42 42 H 1.09000 * 109.79553 * 60.67011 * 18 17 15 43 43 H 0.96995 * 119.99907 * 354.72039 * 23 22 20 44 44 H 1.08996 * 108.71605 * 81.49813 * 28 19 18 45 45 H 1.09001 * 108.70818 * 199.51168 * 28 19 18 46 46 H 1.07991 * 119.31521 * 179.72685 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1593 1.1914 0.0000 4 6 3.5670 1.2371 0.0005 5 6 4.5118 2.2488 0.0003 6 7 5.7232 1.6788 0.0006 7 1 6.5651 2.1606 0.0008 8 7 5.5956 0.2848 0.0005 9 6 4.3186 -0.0284 -0.0005 10 6 3.5586 -1.2828 -0.0005 11 6 4.2510 -2.5814 0.0000 12 8 5.4059 -2.6548 0.3750 13 7 3.6057 -3.6894 -0.4150 14 6 2.2255 -3.9954 -0.8466 15 6 2.8566 -5.1520 -1.6563 16 1 2.2897 -6.0829 -1.6487 17 6 3.2415 -4.6858 -3.0618 18 6 4.5380 -5.3778 -3.4912 19 7 5.5794 -5.0332 -2.5182 20 6 6.7330 -4.4271 -2.9391 21 1 7.2820 -3.7850 -2.2664 22 6 7.1965 -4.6380 -4.2305 23 7 6.8607 -5.7327 -4.8796 24 14 8.2968 -3.3684 -5.0469 25 1 8.6526 -3.8272 -6.4136 26 1 9.5348 -3.1973 -4.2447 27 1 7.5784 -2.0715 -5.1310 28 6 5.3935 -5.3391 -1.1061 29 6 3.9821 -5.0927 -0.6264 30 1 3.7590 -5.7034 0.2483 31 6 2.1742 -1.2185 -0.0070 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3632 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.5937 2.1115 0.0004 36 1 4.3078 3.3094 -0.0001 37 1 1.7754 -3.2191 -1.4654 38 1 1.5749 -4.3279 -0.0377 39 1 3.3899 -3.6059 -3.0586 40 1 2.4447 -4.9411 -3.7604 41 1 4.8303 -5.0305 -4.4822 42 1 4.3920 -6.4578 -3.5076 43 1 6.3536 -6.4268 -4.4302 44 1 5.6458 -6.3862 -0.9388 45 1 6.0745 -4.7204 -0.5217 46 1 1.6024 -2.1346 -0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084721390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = 101.192063 kcal Electronic energy + Delta-G solvation = -30425.027660 eV Core-core repulsion = 26510.221994 eV Total energy + Delta-G solvation = -3914.805665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32524 -41.82652 -39.29667 -38.25897 -37.40788 -33.89286 -33.39189 -32.70997 -32.24568 -31.41211 -29.76217 -28.59721 -27.28413 -25.95603 -25.28575 -24.74343 -22.84454 -22.66824 -21.94363 -20.69678 -19.76965 -19.21136 -18.83634 -18.15768 -17.41542 -17.10942 -16.89255 -16.14966 -16.02837 -15.84630 -15.61604 -15.47039 -15.37156 -14.93391 -14.67431 -14.56417 -14.17458 -14.15632 -13.93764 -13.57372 -13.32012 -13.06051 -12.88275 -12.76858 -12.67664 -12.58824 -12.36024 -12.19538 -11.99426 -11.96383 -11.81044 -11.54738 -11.50165 -11.21677 -11.14404 -10.55635 -10.49879 -9.86298 -9.61816 -8.94375 -8.54502 -8.32166 -5.44810 -0.61153 0.80777 1.17918 1.43444 1.50661 1.72308 1.72822 1.89975 2.06556 2.54408 2.83615 3.10595 3.22300 3.35113 3.42010 3.52307 3.73519 3.86994 3.99457 4.14021 4.17859 4.25339 4.28773 4.36854 4.41541 4.47976 4.52692 4.55767 4.62428 4.65344 4.74818 4.83737 4.95056 4.98179 5.05327 5.06177 5.12658 5.15464 5.24170 5.26287 5.35313 5.40399 5.56539 5.65478 5.77217 5.93743 6.25304 6.35987 6.60888 6.82663 7.05531 7.29145 7.76609 8.11518 8.91884 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.004528 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.459004 B = 6182.061875 C = 7709.695660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.159 4.159 3 C 0.004 3.996 4 C -0.244 4.244 5 C 0.130 3.870 6 N -0.426 5.426 7 H 0.457 0.543 8 N -0.357 5.357 9 C 0.102 3.898 10 C -0.164 4.164 11 C 0.569 3.431 12 O -0.590 6.590 13 N -0.635 5.635 14 C 0.104 3.896 15 C -0.096 4.096 16 H 0.136 0.864 17 C -0.108 4.108 18 C 0.149 3.851 19 N -0.605 5.605 20 C -0.349 4.349 21 H 0.013 0.987 22 C -0.066 4.066 23 N -0.932 5.932 24 Si 1.107 2.893 25 H -0.272 1.272 26 H -0.286 1.286 27 H -0.291 1.291 28 C 0.145 3.855 29 C 0.121 3.879 30 H 0.110 0.890 31 C -0.010 4.010 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.173 0.827 36 H 0.256 0.744 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.033 0.967 40 H 0.095 0.905 41 H 0.047 0.953 42 H 0.022 0.978 43 H 0.258 0.742 44 H 0.014 0.986 45 H 0.024 0.976 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.723 16.600 10.381 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.160 4.160 3 C -0.016 4.016 4 C -0.254 4.254 5 C -0.029 4.029 6 N -0.126 5.126 7 H 0.304 0.696 8 N -0.184 5.184 9 C -0.055 4.055 10 C -0.171 4.171 11 C 0.362 3.638 12 O -0.472 6.472 13 N -0.370 5.370 14 C -0.017 4.017 15 C -0.115 4.115 16 H 0.154 0.846 17 C -0.147 4.147 18 C 0.024 3.976 19 N -0.330 5.330 20 C -0.479 4.479 21 H 0.031 0.969 22 C -0.263 4.263 23 N -0.574 5.574 24 Si 0.932 3.068 25 H -0.197 1.197 26 H -0.212 1.212 27 H -0.218 1.218 28 C 0.019 3.981 29 C 0.017 3.983 30 H 0.128 0.872 31 C -0.032 4.032 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.190 0.810 36 H 0.272 0.728 37 H 0.116 0.884 38 H 0.152 0.848 39 H 0.051 0.949 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.032 0.968 45 H 0.042 0.958 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -18.956 16.629 9.259 26.862 hybrid contribution 0.452 -0.268 1.614 1.698 sum -18.503 16.361 10.873 26.987 Atomic orbital electron populations 1.20788 0.87570 1.04154 1.03235 1.19492 0.98412 0.91414 1.06707 1.20656 0.89766 0.99466 0.91692 1.20107 0.96394 0.90316 1.18608 1.23790 0.83223 1.01004 0.94877 1.46592 1.09907 1.04802 1.51310 0.69586 1.77814 1.18660 0.90714 1.31173 1.21969 0.90764 0.94983 0.97823 1.19873 0.93886 0.88227 1.15085 1.18166 0.85358 0.83951 0.76342 1.90760 1.19741 1.86670 1.50043 1.49843 1.14176 1.07603 1.65349 1.24018 0.83615 0.96053 0.97992 1.22869 0.94954 1.00578 0.93050 0.84614 1.21748 0.97668 0.98887 0.96382 1.20855 0.87888 0.95792 0.93053 1.43723 1.16168 1.70835 1.02252 1.19973 1.03592 1.23518 1.00826 0.96869 1.26930 1.01941 1.01095 0.96287 1.70885 1.40109 1.05481 1.40905 0.82959 0.74594 0.73357 0.75873 1.19671 1.21232 1.21839 1.20206 0.95758 0.96403 0.85735 1.22527 0.95506 0.81791 0.98524 0.87243 1.21749 0.90487 1.00515 0.90457 0.90499 0.90742 0.89739 0.81016 0.72821 0.88412 0.84798 0.94856 0.88631 0.93454 0.96002 0.93217 0.96807 0.95773 0.82558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 9.92 71.24 0.71 -0.20 16 2 C -0.16 -2.84 5.82 -20.26 -0.12 -2.96 16 3 C 0.00 0.07 9.58 22.35 0.21 0.28 16 4 C -0.24 -5.87 6.34 -20.24 -0.13 -6.00 16 5 C 0.13 2.11 12.08 84.43 1.02 3.13 16 6 N -0.43 -10.27 7.18 -56.29 -0.40 -10.67 16 7 H 0.46 7.36 8.96 -213.40 -1.91 5.45 16 8 N -0.36 -14.51 12.42 -45.22 -0.56 -15.07 16 9 C 0.10 3.83 7.28 43.75 0.32 4.15 16 10 C -0.16 -6.12 6.03 -18.65 -0.11 -6.23 16 11 C 0.57 25.83 7.79 86.59 0.67 26.51 16 12 O -0.59 -33.83 15.79 -4.18 -0.07 -33.90 16 13 N -0.64 -23.48 3.34 -826.37 -2.76 -26.24 16 14 C 0.10 2.34 5.71 86.33 0.49 2.83 16 15 C -0.10 -2.69 4.39 -10.32 -0.05 -2.74 16 16 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 17 C -0.11 -3.93 5.66 30.63 0.17 -3.76 16 18 C 0.15 7.35 4.63 86.39 0.40 7.75 16 19 N -0.61 -34.57 2.86 -707.19 -2.03 -36.60 16 20 C -0.35 -22.97 9.44 84.03 0.79 -22.18 16 21 H 0.01 0.97 7.89 -2.91 -0.02 0.95 16 22 C -0.07 -4.15 4.67 84.86 0.40 -3.76 16 23 N -0.93 -59.92 12.31 21.65 0.27 -59.66 16 24 Si 1.11 57.94 29.98 68.60 2.06 59.99 16 25 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 27 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 28 C 0.15 7.40 6.21 85.91 0.53 7.93 16 29 C 0.12 4.46 4.22 43.84 0.19 4.64 16 30 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 31 C -0.01 -0.25 8.36 22.52 0.19 -0.06 16 32 H 0.08 0.59 8.14 -2.38 -0.02 0.58 16 33 H 0.07 0.55 8.06 -2.39 -0.02 0.53 16 34 H 0.08 0.45 8.04 -2.39 -0.02 0.43 16 35 H 0.17 1.22 8.04 -2.91 -0.02 1.19 16 36 H 0.26 0.42 8.06 -2.91 -0.02 0.40 16 37 H 0.10 1.95 6.71 -2.39 -0.02 1.94 16 38 H 0.13 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.03 1.39 7.69 -2.39 -0.02 1.38 16 40 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.05 2.68 6.01 -2.39 -0.01 2.66 16 42 H 0.02 1.05 7.98 -2.39 -0.02 1.03 16 43 H 0.26 16.66 6.71 -92.71 -0.62 16.04 16 44 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.02 1.44 6.41 -2.39 -0.02 1.42 16 46 H 0.16 2.94 4.84 -2.92 -0.01 2.93 16 Total: -1.00 -107.05 367.63 1.46 -105.59 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -0.74 Total: 7.21 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.69 Total: 9.34 kcal Atomic # 7 Polarization: -142.75 SS G_CDS: -5.49 Total: -148.23 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.07 Total: -33.90 kcal Atomic # 14 Polarization: 57.94 SS G_CDS: 2.06 Total: 59.99 kcal Total: -107.05 1.46 -105.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084721390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.778 kcal (2) G-P(sol) polarization free energy of solvation -107.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds