Wall clock time and date at job start Sat Apr 11 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00426 * 2 1 4 4 H 1.48493 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46878 * 300.00072 * 3 2 1 6 6 H 1.48502 * 109.47096 * 59.99579 * 3 2 1 7 7 C 1.38816 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00420 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99779 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00141 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.01545 * 33.60680 * 10 9 7 12 12 C 1.54270 * 110.03098 * 272.16779 * 10 9 7 13 13 C 1.54895 * 104.19373 * 264.32327 * 12 10 9 14 14 C 1.54891 * 102.74911 * 322.05768 * 13 12 10 15 15 H 1.09000 * 110.59831 * 279.20846 * 14 13 12 16 16 C 1.53001 * 110.48630 * 156.62043 * 14 13 12 17 17 N 1.46501 * 109.47040 * 70.22463 * 16 14 13 18 18 C 1.34774 * 119.99905 * 179.97438 * 17 16 14 19 19 O 1.21487 * 120.00233 * 359.97438 * 18 17 16 20 20 C 1.48383 * 120.00002 * 179.97438 * 18 17 16 21 21 C 1.40206 * 119.21912 * 179.97438 * 20 18 17 22 22 C 1.36646 * 119.90613 * 180.02562 * 21 20 18 23 23 C 1.40561 * 118.11053 * 0.02562 * 22 21 20 24 24 C 1.40399 * 122.06716 * 180.02562 * 23 22 21 25 25 N 1.31249 * 119.87128 * 179.97438 * 24 23 22 26 26 C 1.32597 * 122.68603 * 359.97438 * 25 24 23 27 27 C 1.36104 * 121.99046 * 359.97438 * 26 25 24 28 28 C 1.40939 * 118.76827 * 0.02562 * 27 26 25 29 29 N 1.31989 * 119.21808 * 0.02562 * 20 18 17 30 30 C 1.53869 * 110.03241 * 154.99924 * 10 9 7 31 31 H 0.96991 * 119.99547 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00348 * 359.97438 * 9 7 2 33 33 H 1.08998 * 110.48335 * 23.00061 * 12 10 9 34 34 H 1.08994 * 110.48978 * 145.51387 * 12 10 9 35 35 H 1.08998 * 110.75676 * 203.74099 * 13 12 10 36 36 H 1.09001 * 110.75219 * 80.37338 * 13 12 10 37 37 H 1.09002 * 109.46674 * 310.22590 * 16 14 13 38 38 H 1.08999 * 109.46769 * 190.22765 * 16 14 13 39 39 H 0.97001 * 119.99567 * 359.97438 * 17 16 14 40 40 H 1.07997 * 120.04856 * 0.05123 * 21 20 18 41 41 H 1.07999 * 120.94629 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.06323 * 359.97438 * 24 23 22 43 43 H 1.08000 * 119.00013 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.61207 * 180.02562 * 27 26 25 45 45 H 1.09000 * 110.03589 * 0.02562 * 30 10 9 46 46 H 1.09004 * 110.03611 * 238.56460 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 1 2.9828 -3.5533 0.5692 12 6 2.3708 -4.0877 -1.4462 13 6 1.2227 -5.0622 -1.8089 14 6 0.9999 -5.8356 -0.4856 15 1 1.7392 -6.6289 -0.3759 16 6 -0.4157 -6.4140 -0.4352 17 7 -0.5320 -7.5057 -1.4051 18 6 -1.6979 -8.1687 -1.5369 19 8 -2.6524 -7.8613 -0.8511 20 6 -1.8159 -9.2741 -2.5198 21 6 -3.0364 -9.9531 -2.6429 22 6 -3.1604 -10.9736 -3.5432 23 6 -2.0401 -11.3085 -4.3232 24 6 -2.0752 -12.3417 -5.2732 25 7 -1.0034 -12.6177 -5.9787 26 6 0.1368 -11.9556 -5.8377 27 6 0.2735 -10.9370 -4.9454 28 6 -0.8331 -10.5795 -4.1493 29 7 -0.7690 -9.5955 -3.2566 30 6 1.1864 -4.7681 0.6124 31 1 -0.4849 0.8400 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 2.3627 -3.2242 -2.1113 34 1 3.3340 -4.5956 -1.4935 35 1 1.5286 -5.7401 -2.6058 36 1 0.3246 -4.5128 -2.0913 37 1 -1.1361 -5.6331 -0.6790 38 1 -0.6172 -6.7945 0.5662 39 1 0.2303 -7.7514 -1.9525 40 1 -3.8774 -9.6697 -2.0275 41 1 -4.0928 -11.5077 -3.6522 42 1 -2.9823 -12.9082 -5.4231 43 1 0.9822 -12.2325 -6.4501 44 1 1.2127 -10.4125 -4.8493 45 1 0.2182 -4.3635 0.9076 46 1 1.6885 -5.2045 1.4759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086814405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:17 Heat of formation + Delta-G solvation = 33.559012 kcal Electronic energy + Delta-G solvation = -27788.013582 eV Core-core repulsion = 23870.275128 eV Total energy + Delta-G solvation = -3917.738454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77545 -39.99933 -38.44803 -37.88577 -35.08543 -34.20605 -33.29115 -32.21697 -30.97356 -30.63518 -29.02268 -27.46974 -26.20021 -24.80784 -23.96928 -23.21079 -23.13619 -21.23809 -20.05123 -19.25316 -19.07467 -18.37151 -17.75502 -17.09565 -16.52057 -16.18870 -15.81345 -15.41575 -15.16344 -14.98631 -14.80409 -14.71047 -14.49054 -13.88670 -13.68004 -13.57760 -13.39013 -13.22158 -12.99814 -12.77822 -12.63869 -12.20110 -11.41481 -11.27221 -11.19572 -10.88714 -10.76740 -10.63165 -10.58019 -10.49297 -10.31159 -10.24206 -10.16311 -9.95967 -9.84375 -9.84221 -9.61471 -9.14460 -9.06034 -8.87264 -6.91914 -5.74970 -3.03084 -0.48725 0.02847 1.28102 2.01870 2.79505 2.92374 3.43810 3.47499 3.49562 3.51769 3.57844 3.79405 3.93915 4.12071 4.17636 4.32858 4.60360 4.63345 4.77210 4.86460 4.95866 5.04359 5.10401 5.13115 5.21225 5.36000 5.48810 5.55308 5.58022 5.72195 5.72990 5.78612 5.92159 6.00647 6.04023 6.08386 6.12692 6.21529 6.33015 6.36026 6.48374 6.67044 6.76989 6.92622 6.98191 7.12026 7.34762 7.37101 7.73171 7.94177 8.44401 9.55028 10.14765 10.48657 11.47741 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.001904 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.905140 B =14703.498467 C =15289.799388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.103 4.103 15 H 0.076 0.924 16 C 0.123 3.877 17 N -0.700 5.700 18 C 0.562 3.438 19 O -0.526 6.526 20 C 0.145 3.855 21 C -0.131 4.131 22 C -0.036 4.036 23 C -0.155 4.155 24 C 0.160 3.840 25 N -0.484 5.484 26 C 0.088 3.912 27 C -0.134 4.134 28 C 0.153 3.847 29 N -0.448 5.448 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.411 0.589 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.170 0.830 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.073 0.927 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -28.317 -9.384 30.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.066 0.934 12 C -0.186 4.186 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.000 4.000 17 N -0.351 5.351 18 C 0.345 3.655 19 O -0.401 6.401 20 C -0.011 4.011 21 C -0.151 4.151 22 C -0.064 4.064 23 C -0.160 4.160 24 C -0.014 4.014 25 N -0.191 5.191 26 C -0.055 4.055 27 C -0.154 4.154 28 C 0.025 3.975 29 N -0.160 5.160 30 C -0.160 4.160 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.247 0.753 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.187 0.813 43 H 0.180 0.820 44 H 0.168 0.832 45 H 0.092 0.908 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.943 -28.123 -9.456 29.816 hybrid contribution -0.184 1.114 0.176 1.143 sum -3.127 -27.009 -9.280 28.729 Atomic orbital electron populations 1.69670 1.05073 1.25478 1.57872 1.24746 0.95507 0.97669 1.03198 0.86142 0.78776 0.84287 0.77145 1.20600 1.21957 1.21936 1.19306 0.91035 0.84217 1.42310 0.91169 1.42554 1.05663 0.99713 1.88255 1.20802 0.94127 0.86066 0.92623 0.93360 1.23115 0.96029 0.98621 1.00876 1.22504 0.99993 0.97406 0.95164 1.22244 0.94460 0.97864 0.97667 0.90609 1.21670 0.98064 0.88397 0.91853 1.45926 1.13545 1.34729 1.40855 1.17883 0.83640 0.81598 0.82396 1.90820 1.37818 1.66353 1.45113 1.21656 0.90196 0.95120 0.94095 1.21859 0.98666 0.95499 0.99106 1.21481 0.97826 0.94957 0.92184 1.19965 0.95763 0.99811 1.00418 1.23278 0.96953 0.92172 0.88978 1.67507 0.99677 1.27755 1.24186 1.22314 0.95433 0.91775 0.95993 1.21830 0.98830 0.98778 0.95986 1.18874 0.93009 0.91738 0.93913 1.67878 1.29552 1.13897 1.04628 1.22469 1.01504 0.95383 0.96628 0.93604 0.78269 0.90973 0.93312 0.92886 0.91303 0.90495 0.91158 0.75315 0.82519 0.82800 0.81328 0.82033 0.83185 0.90842 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.54 9.96 -15.06 -0.15 -6.69 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.77 5.08 -52.34 -0.27 -18.03 16 10 C 0.17 3.36 3.55 -66.81 -0.24 3.12 16 11 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 12 C -0.15 -2.50 6.54 -25.07 -0.16 -2.66 16 13 C -0.11 -1.64 6.19 -24.73 -0.15 -1.79 16 14 C -0.10 -1.34 2.89 -88.96 -0.26 -1.60 16 15 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.12 1.59 4.96 -4.04 -0.02 1.57 16 17 N -0.70 -8.29 5.43 -61.08 -0.33 -8.62 16 18 C 0.56 7.22 7.82 -12.08 -0.09 7.13 16 19 O -0.53 -8.20 16.28 5.38 0.09 -8.12 16 20 C 0.14 1.57 6.75 -82.88 -0.56 1.01 16 21 C -0.13 -1.11 9.54 -39.42 -0.38 -1.49 16 22 C -0.04 -0.23 9.92 -39.28 -0.39 -0.62 16 23 C -0.16 -1.19 5.75 -106.74 -0.61 -1.80 16 24 C 0.16 1.03 11.05 -16.99 -0.19 0.84 16 25 N -0.48 -3.85 10.30 -13.18 -0.14 -3.99 16 26 C 0.09 0.61 11.06 -17.99 -0.20 0.41 16 27 C -0.13 -1.02 10.08 -39.33 -0.40 -1.42 16 28 C 0.15 1.43 6.63 -84.86 -0.56 0.87 16 29 N -0.45 -4.70 9.50 -7.49 -0.07 -4.78 16 30 C -0.12 -1.90 6.14 -25.61 -0.16 -2.05 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.10 7.52 -40.82 -0.31 9.79 16 33 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.13 7.97 -51.93 -0.41 0.72 16 37 H 0.08 1.13 8.02 -51.93 -0.42 0.72 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.41 4.31 7.74 -40.82 -0.32 3.99 16 40 H 0.16 1.21 7.60 -52.49 -0.40 0.81 16 41 H 0.15 0.37 8.06 -52.49 -0.42 -0.06 16 42 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.15 0.91 8.06 -52.48 -0.42 0.48 16 45 H 0.07 1.26 7.31 -51.93 -0.38 0.88 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -33.67 386.19 -10.23 -43.90 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.42 Total: 9.61 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.61 Total: -5.71 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.08 Total: -62.92 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.67 -10.23 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086814405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.455 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds